Wall clock time and date at job start Tue Mar 31 2020 20:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.53001 * 109.46763 * 120.00310 * 2 1 3 5 5 N 1.46500 * 109.47346 * 294.99710 * 4 2 1 6 6 C 1.36932 * 120.00017 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00002 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99840 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99902 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46993 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47694 * 119.99805 * 10 8 6 13 13 H 1.48500 * 109.47327 * 240.00067 * 10 8 6 14 14 C 1.53004 * 109.46965 * 239.99938 * 2 1 3 15 15 N 1.46500 * 109.46960 * 65.00298 * 14 2 1 16 16 C 1.34780 * 120.00066 * 179.97438 * 15 14 2 17 17 O 1.21594 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.47522 * 119.99915 * 180.02562 * 16 15 14 19 19 C 1.36595 * 125.76875 * 180.23849 * 18 16 15 20 20 N 1.34812 * 106.84032 * 180.13891 * 19 18 16 21 21 C 1.46502 * 126.59471 * 179.90509 * 20 19 18 22 22 C 1.53005 * 109.46915 * 124.70599 * 21 20 19 23 23 H 1.08997 * 110.81024 * 302.82768 * 22 21 20 24 24 C 1.54806 * 110.93853 * 179.17271 * 22 21 20 25 25 C 1.54099 * 104.19470 * 220.91054 * 24 22 21 26 26 O 1.43889 * 107.37252 * 358.10337 * 25 24 22 27 27 C 1.44388 * 106.89814 * 26.27302 * 26 25 24 28 28 N 1.40208 * 106.80777 * 359.63871 * 20 19 18 29 29 N 1.28754 * 108.37192 * 0.23141 * 28 20 19 30 30 H 1.08998 * 109.46589 * 59.99632 * 1 2 3 31 31 H 1.08997 * 109.46837 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46786 * 300.00428 * 1 2 3 33 33 H 1.08997 * 109.47553 * 55.00028 * 4 2 1 34 34 H 1.09001 * 109.47011 * 174.99786 * 4 2 1 35 35 H 0.97001 * 119.99796 * 359.97438 * 5 4 2 36 36 H 0.96996 * 119.99830 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47127 * 305.00440 * 14 2 1 38 38 H 1.08997 * 109.46936 * 185.00124 * 14 2 1 39 39 H 0.97001 * 120.00041 * 0.02562 * 15 14 2 40 40 H 1.08003 * 126.58103 * 0.02562 * 19 18 16 41 41 H 1.08995 * 109.46934 * 4.71151 * 21 20 19 42 42 H 1.08997 * 109.47047 * 244.70376 * 21 20 19 43 43 H 1.09002 * 110.48575 * 339.59172 * 24 22 21 44 44 H 1.09004 * 110.48517 * 102.10161 * 24 22 21 45 45 H 1.09001 * 109.87936 * 117.39322 * 25 24 22 46 46 H 1.08993 * 109.88056 * 238.39954 * 25 24 22 47 47 H 1.09002 * 110.61854 * 201.57804 * 27 26 25 48 48 H 1.09000 * 110.62045 * 78.73713 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4424 6 6 2.0019 -0.4205 3.6855 7 1 2.5636 -1.3374 3.7863 8 6 1.6343 0.2961 4.8161 9 7 0.9502 1.4139 4.6932 10 14 2.1116 -0.3251 6.5118 11 1 2.8723 -1.5935 6.3783 12 1 2.9561 0.6899 7.1914 13 1 0.8853 -0.5660 7.3140 14 6 2.0401 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9965 -0.4130 -3.6660 17 8 2.6289 -1.4454 -3.7795 18 6 1.6067 0.3492 -4.8673 19 6 1.8875 0.0030 -6.1585 20 7 1.3592 0.9629 -6.9440 21 6 1.4107 1.0208 -8.4069 22 6 -0.0099 1.1370 -8.9631 23 1 -0.6272 0.3045 -8.6255 24 6 0.0063 1.2216 -10.5087 25 6 -1.0581 2.2856 -10.8401 26 8 -1.6412 2.7121 -9.5957 27 6 -0.6483 2.4938 -8.5703 28 7 0.7456 1.8920 -6.0917 29 7 0.9109 1.4991 -4.8768 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7996 1.2056 35 1 1.1490 0.8593 2.3518 36 1 0.6930 1.9144 5.4832 37 1 1.6054 -1.7198 -1.2952 38 1 3.1263 -0.7995 -1.2056 39 1 1.1490 0.8595 -2.3517 40 1 2.4303 -0.8710 -6.4871 41 1 1.8778 0.1136 -8.7902 42 1 1.9939 1.8883 -8.7159 43 1 0.9868 1.5395 -10.8631 44 1 -0.2633 0.2603 -10.9462 45 1 -0.5905 3.1352 -11.3376 46 1 -1.8247 1.8550 -11.4842 47 1 -1.1182 2.4272 -7.5890 48 1 0.0985 3.2876 -8.5839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714442412.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:26 Heat of formation + Delta-G solvation = -8.795639 kcal Electronic energy + Delta-G solvation = -27986.409739 eV Core-core repulsion = 23884.555870 eV Total energy + Delta-G solvation = -4101.853869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.26625 -40.61953 -40.32212 -38.20233 -36.34639 -35.94233 -34.12152 -33.33085 -32.21518 -31.62670 -30.35050 -27.94885 -27.57057 -27.06325 -24.93071 -23.91701 -23.74742 -22.89739 -21.91305 -21.51701 -21.06838 -19.46167 -18.87216 -17.71363 -17.36946 -17.23397 -16.95453 -16.66327 -16.49454 -16.35523 -16.01670 -15.66890 -15.44171 -15.40010 -15.27189 -14.96442 -14.60955 -14.18229 -14.06916 -13.75098 -13.57459 -13.53993 -13.21876 -12.94457 -12.81881 -12.74480 -12.49695 -12.37191 -12.17286 -12.11625 -11.98414 -11.94532 -11.73597 -11.71821 -11.64193 -11.31420 -11.22867 -10.93611 -10.69556 -10.42336 -10.03443 -8.97379 -7.93756 -5.22061 0.14408 0.61220 1.06491 1.48779 1.49395 1.59706 2.11322 2.23765 2.58091 2.88477 3.18269 3.33468 3.40191 3.48198 3.62012 3.72902 3.81057 3.94079 3.97887 3.98521 4.10168 4.10905 4.21517 4.33775 4.35426 4.42276 4.49745 4.56455 4.67251 4.73471 4.78959 4.81584 4.85706 4.88685 4.95589 4.99543 5.05724 5.14696 5.15247 5.32159 5.40036 5.43954 5.48101 5.52206 5.88405 6.28719 6.40942 6.89617 7.11868 7.35454 8.11386 8.35002 9.30037 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.001577 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.981566 B =17748.664333 C =18433.090405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.074 0.926 4 C 0.158 3.842 5 N -0.742 5.742 6 C -0.245 4.245 7 H 0.076 0.924 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.266 1.266 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.139 3.861 15 N -0.706 5.706 16 C 0.603 3.397 17 O -0.569 6.569 18 C -0.126 4.126 19 C 0.116 3.884 20 N -0.350 5.350 21 C 0.124 3.876 22 C -0.131 4.131 23 H 0.086 0.914 24 C -0.135 4.135 25 C 0.033 3.967 26 O -0.411 6.411 27 C 0.052 3.948 28 N -0.084 5.084 29 N -0.227 5.227 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.413 0.587 40 H 0.240 0.760 41 H 0.154 0.846 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 -1.976 -39.221 39.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.386 5.386 6 C -0.377 4.377 7 H 0.094 0.906 8 C -0.268 4.268 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.190 1.190 12 H -0.221 1.221 13 H -0.221 1.221 14 C 0.015 3.985 15 N -0.356 5.356 16 C 0.389 3.611 17 O -0.448 6.448 18 C -0.266 4.266 19 C -0.041 4.041 20 N -0.135 5.135 21 C 0.005 3.995 22 C -0.151 4.151 23 H 0.104 0.896 24 C -0.173 4.173 25 C -0.043 4.043 26 O -0.331 6.331 27 C -0.025 4.025 28 N -0.064 5.064 29 N -0.100 5.100 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.208 0.792 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.249 0.751 40 H 0.257 0.743 41 H 0.172 0.828 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.653 -1.435 -39.129 39.161 hybrid contribution 0.223 -0.202 1.302 1.337 sum 0.876 -1.638 -37.827 37.872 Atomic orbital electron populations 1.21722 0.94187 1.01989 1.01429 1.21346 0.96972 1.00056 0.93131 0.90718 1.20726 0.96703 0.94143 0.85337 1.42537 1.66800 1.27800 1.01425 1.19698 1.27642 1.05338 0.85010 0.90602 1.25559 1.01758 0.97911 1.01571 1.69825 1.45208 1.17990 1.28986 0.85067 0.77058 0.77637 0.79963 1.19036 1.22057 1.22064 1.21236 1.00047 0.95034 0.82186 1.45797 1.56674 1.28016 1.05118 1.16957 0.78511 0.83458 0.82205 1.90789 1.42130 1.25004 1.86849 1.21432 1.11763 0.98264 0.95129 1.23875 0.95854 0.95201 0.89219 1.50780 1.36618 1.16124 1.09949 1.22553 0.97942 1.08729 0.70269 1.22987 0.95727 0.98939 0.97450 0.89605 1.22927 1.01248 1.01024 0.92098 1.23433 0.96912 0.97433 0.86537 1.88928 1.39731 1.86168 1.18299 1.23667 0.91285 0.95823 0.91695 1.81907 1.18464 1.13074 0.92977 1.74648 1.11166 1.09795 1.14405 0.91364 0.92588 0.93889 0.95711 0.95870 0.79211 0.94046 0.90916 0.91203 0.75053 0.74343 0.82779 0.86102 0.87392 0.88170 0.91341 0.89169 0.90425 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.94 71.98 0.64 -3.56 16 2 C -0.10 -3.03 2.46 -10.79 -0.03 -3.05 16 3 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.16 6.32 5.65 86.38 0.49 6.81 16 5 N -0.74 -38.10 5.33 -343.46 -1.83 -39.93 16 6 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 7 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 8 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 9 N -0.97 -60.02 13.06 21.65 0.28 -59.73 16 10 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 C 0.14 3.80 5.06 86.38 0.44 4.24 16 15 N -0.71 -17.81 5.28 -466.28 -2.46 -20.27 16 16 C 0.60 15.48 7.82 86.69 0.68 16.16 16 17 O -0.57 -17.03 16.86 -4.01 -0.07 -17.10 16 18 C -0.13 -2.67 6.99 40.82 0.29 -2.38 16 19 C 0.12 1.48 11.27 83.85 0.95 2.42 16 20 N -0.35 -3.94 3.69 -347.10 -1.28 -5.22 16 21 C 0.12 0.23 5.93 86.38 0.51 0.74 16 22 C -0.13 -0.73 3.37 -9.49 -0.03 -0.76 16 23 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 24 C -0.14 -0.16 6.60 31.58 0.21 0.05 16 25 C 0.03 0.24 7.70 72.35 0.56 0.80 16 26 O -0.41 -6.83 11.54 -148.98 -1.72 -8.55 16 27 C 0.05 0.68 6.09 72.67 0.44 1.12 16 28 N -0.08 -1.66 11.79 37.02 0.44 -1.22 16 29 N -0.23 -5.32 12.04 -50.00 -0.60 -5.92 16 30 H 0.07 1.77 7.18 -2.39 -0.02 1.75 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.57 7.18 -2.39 -0.02 1.55 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.38 20.37 6.85 -92.71 -0.64 19.74 16 36 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.41 9.83 7.34 -92.71 -0.68 9.15 16 40 H 0.24 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.15 -0.91 8.08 -2.39 -0.02 -0.93 16 42 H 0.12 -0.09 8.10 -2.39 -0.02 -0.11 16 43 H 0.11 -0.39 7.86 -2.39 -0.02 -0.40 16 44 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 47 H 0.08 1.40 7.30 -2.39 -0.02 1.38 16 48 H 0.07 0.81 8.02 -2.39 -0.02 0.79 16 Total: -1.00 -78.79 397.37 0.90 -77.90 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -0.33 Total: 25.67 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.45 Total: 5.57 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -5.46 Total: -132.30 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.79 Total: -25.65 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -78.79 0.90 -77.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714442412.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.100 kcal (2) G-P(sol) polarization free energy of solvation -78.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds