Wall clock time and date at job start Tue Mar 31 2020 20:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 C 1.36936 * 120.00002 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00367 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99972 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00444 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47203 * 89.99650 * 10 8 6 12 12 H 1.48501 * 109.47104 * 209.99764 * 10 8 6 13 13 H 1.48504 * 109.46767 * 329.99904 * 10 8 6 14 14 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 15 15 N 1.46500 * 109.47013 * 294.99895 * 14 2 1 16 16 C 1.34771 * 120.00099 * 179.97438 * 15 14 2 17 17 O 1.21597 * 119.99703 * 0.02562 * 16 15 14 18 18 C 1.47518 * 120.00189 * 180.02562 * 16 15 14 19 19 C 1.36597 * 125.77079 * 179.71817 * 18 16 15 20 20 N 1.34817 * 106.84097 * 179.89944 * 19 18 16 21 21 C 1.46499 * 126.59460 * 180.13045 * 20 19 18 22 22 C 1.53005 * 109.46691 * 125.24411 * 21 20 19 23 23 H 1.08995 * 110.45751 * 52.39515 * 22 21 20 24 24 C 1.54511 * 110.50848 * 174.99872 * 22 21 20 25 25 C 1.54479 * 104.06440 * 118.64574 * 24 22 21 26 26 O 1.44429 * 104.80200 * 23.97337 * 25 24 22 27 27 C 1.44419 * 105.27534 * 319.49284 * 26 25 24 28 28 N 1.40212 * 106.80709 * 0.35598 * 20 19 18 29 29 N 1.28759 * 108.37097 * 359.77311 * 28 20 19 30 30 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 31 31 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 32 32 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 34 34 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 36 36 H 0.96996 * 120.00586 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.46746 * 54.99828 * 14 2 1 38 38 H 1.08998 * 109.47205 * 174.99996 * 14 2 1 39 39 H 0.96999 * 120.00220 * 359.97438 * 15 14 2 40 40 H 1.07999 * 126.58169 * 0.03959 * 19 18 16 41 41 H 1.09001 * 109.46840 * 245.23986 * 21 20 19 42 42 H 1.08997 * 109.47076 * 5.24788 * 21 20 19 43 43 H 1.09000 * 110.51266 * 237.29371 * 24 22 21 44 44 H 1.09005 * 110.51048 * 359.97438 * 24 22 21 45 45 H 1.08997 * 110.37365 * 142.80993 * 25 24 22 46 46 H 1.09008 * 110.37141 * 265.14793 * 25 24 22 47 47 H 1.08995 * 110.37443 * 281.67596 * 27 26 25 48 48 H 1.09005 * 110.37176 * 159.33682 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0010 -0.4209 -3.6855 7 1 2.5614 -1.3387 -3.7865 8 6 1.6343 0.2962 -4.8161 9 7 0.9510 1.4144 -4.6932 10 14 2.1093 -0.3264 -6.5120 11 1 1.0381 -1.2140 -7.0313 12 1 2.2857 0.8266 -7.4311 13 1 3.3817 -1.0868 -6.4216 14 6 2.0400 -0.7213 1.2493 15 7 1.6524 0.0354 2.4424 16 6 1.9955 -0.4135 3.6660 17 8 2.6271 -1.4463 3.7796 18 6 1.6048 0.3481 4.8674 19 6 1.8839 0.0009 6.1587 20 7 1.3545 0.9602 6.9443 21 6 1.4047 1.0173 8.4073 22 6 2.0032 2.3556 8.8451 23 1 1.4757 3.1825 8.3697 24 6 1.9527 2.4939 10.3832 25 6 3.4358 2.6145 10.7981 26 8 4.1086 3.1147 9.6220 27 6 3.5109 2.4090 8.5128 28 7 0.7420 1.8899 6.0920 29 7 0.9089 1.4980 4.8769 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1263 -0.7996 -1.2055 34 1 1.6053 -1.7198 -1.2951 35 1 1.1488 0.8594 -2.3518 36 1 0.6944 1.9154 -5.4831 37 1 1.6053 -1.7198 1.2952 38 1 3.1262 -0.7995 1.2057 39 1 1.1489 0.8595 2.3518 40 1 2.4267 -0.8730 6.4872 41 1 0.3962 0.9213 8.8094 42 1 2.0243 0.2024 8.7816 43 1 1.4022 3.3905 10.6682 44 1 1.5009 1.6090 10.8316 45 1 3.5427 3.3174 11.6243 46 1 3.8328 1.6380 11.0759 47 1 3.9192 1.4010 8.4400 48 1 3.6754 2.9541 7.5833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714442413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:28 Heat of formation + Delta-G solvation = -9.255512 kcal Electronic energy + Delta-G solvation = -28005.605822 eV Core-core repulsion = 23903.732012 eV Total energy + Delta-G solvation = -4101.873811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.27117 -40.64469 -40.36754 -38.20277 -36.34064 -35.94177 -34.12345 -33.32515 -32.20783 -31.60044 -30.35468 -27.99580 -27.54806 -26.99933 -24.92256 -24.20303 -23.64982 -23.04549 -21.89216 -21.47067 -20.92091 -19.43877 -18.87911 -17.73991 -17.34891 -17.28099 -16.97738 -16.55976 -16.48426 -16.40304 -16.20793 -15.63920 -15.57788 -15.39375 -15.23547 -14.90816 -14.60395 -14.11959 -14.02096 -13.74769 -13.59109 -13.55724 -13.10816 -12.96382 -12.94476 -12.78013 -12.42930 -12.36505 -12.18510 -12.17135 -12.13957 -11.97795 -11.72436 -11.64178 -11.60282 -11.28675 -11.23206 -10.92397 -10.83654 -10.43028 -10.03781 -8.97319 -7.93472 -5.21869 0.14056 0.60971 1.06229 1.48690 1.50440 1.58939 2.10941 2.23353 2.58258 2.90815 3.16434 3.26065 3.40250 3.47675 3.71794 3.74198 3.75441 3.92559 3.96133 3.98352 4.07726 4.10353 4.19432 4.29681 4.35790 4.39332 4.51204 4.56430 4.66472 4.67602 4.73388 4.79227 4.82427 4.89191 4.95582 5.01450 5.05845 5.11940 5.15270 5.31987 5.40059 5.43568 5.48165 5.51916 5.78087 6.28754 6.40660 6.89171 7.11569 7.35562 8.11518 8.35211 9.30067 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.001567 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.438150 B =17858.920737 C =17981.666486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.074 0.926 4 C 0.158 3.842 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.076 0.924 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.270 1.270 14 C 0.139 3.861 15 N -0.705 5.705 16 C 0.603 3.397 17 O -0.569 6.569 18 C -0.125 4.125 19 C 0.113 3.887 20 N -0.348 5.348 21 C 0.123 3.877 22 C -0.132 4.132 23 H 0.083 0.917 24 C -0.137 4.137 25 C 0.033 3.967 26 O -0.406 6.406 27 C 0.045 3.955 28 N -0.084 5.084 29 N -0.226 5.226 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.413 0.587 40 H 0.239 0.761 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -1.824 39.150 39.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.092 0.908 4 C 0.031 3.969 5 N -0.385 5.385 6 C -0.379 4.379 7 H 0.094 0.906 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.214 1.214 12 H -0.222 1.222 13 H -0.195 1.195 14 C 0.015 3.985 15 N -0.356 5.356 16 C 0.388 3.612 17 O -0.448 6.448 18 C -0.265 4.265 19 C -0.045 4.045 20 N -0.132 5.132 21 C 0.004 3.996 22 C -0.152 4.152 23 H 0.101 0.899 24 C -0.175 4.175 25 C -0.043 4.043 26 O -0.325 6.325 27 C -0.032 4.032 28 N -0.065 5.065 29 N -0.100 5.100 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.208 0.792 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.250 0.750 40 H 0.255 0.745 41 H 0.145 0.855 42 H 0.164 0.836 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.117 0.883 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.711 -1.205 39.072 39.097 hybrid contribution 0.149 -0.197 -1.354 1.376 sum 0.860 -1.402 37.718 37.754 Atomic orbital electron populations 1.21717 0.94123 1.02014 1.01444 1.21344 0.97026 1.00031 0.93114 0.90762 1.20725 0.96672 0.94160 0.85352 1.42526 1.66833 1.27788 1.01401 1.19662 1.27874 1.05293 0.85033 0.90641 1.25557 1.01750 0.97866 1.01569 1.69813 1.45180 1.17900 1.29070 0.85132 0.78054 0.76774 0.79754 1.21386 1.22197 1.19480 1.21240 1.00021 0.95061 0.82190 1.45792 1.56678 1.28007 1.05108 1.16956 0.78523 0.83467 0.82210 1.90790 1.42140 1.24972 1.86851 1.21426 1.11761 0.98190 0.95086 1.23863 0.95846 0.95491 0.89261 1.50775 1.36345 1.16162 1.09968 1.22667 1.06339 0.99955 0.70645 1.22815 0.96247 0.97741 0.98408 0.89897 1.22943 0.97426 1.05360 0.91802 1.23717 0.91190 1.00823 0.88534 1.89158 1.61951 1.64419 1.16991 1.23544 0.91664 0.97681 0.90264 1.81923 1.18498 1.13024 0.93009 1.74651 1.11260 1.09737 1.14341 0.91325 0.93888 0.92556 0.95940 0.95686 0.79206 0.94035 0.90856 0.91276 0.75046 0.74464 0.85535 0.83560 0.89754 0.86688 0.88251 0.90306 0.90472 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.94 71.98 0.64 -3.53 16 2 C -0.10 -3.04 2.46 -10.79 -0.03 -3.06 16 3 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.16 6.33 5.65 86.38 0.49 6.82 16 5 N -0.74 -38.14 5.33 -343.45 -1.83 -39.97 16 6 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 7 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 8 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 9 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 10 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.14 3.81 5.06 86.38 0.44 4.25 16 15 N -0.71 -17.85 5.28 -466.27 -2.46 -20.32 16 16 C 0.60 15.55 7.82 86.69 0.68 16.22 16 17 O -0.57 -17.11 16.86 -4.02 -0.07 -17.17 16 18 C -0.12 -2.66 6.99 40.81 0.29 -2.37 16 19 C 0.11 1.47 11.27 83.85 0.95 2.41 16 20 N -0.35 -3.96 3.58 -347.09 -1.24 -5.21 16 21 C 0.12 0.26 5.69 86.38 0.49 0.75 16 22 C -0.13 -0.78 3.24 -9.78 -0.03 -0.81 16 23 H 0.08 0.88 8.06 -2.39 -0.02 0.86 16 24 C -0.14 -0.23 6.74 31.61 0.21 -0.02 16 25 C 0.03 0.18 7.63 72.48 0.55 0.73 16 26 O -0.41 -5.86 11.65 -148.98 -1.74 -7.60 16 27 C 0.05 0.48 7.08 72.48 0.51 0.99 16 28 N -0.08 -1.69 13.58 37.02 0.50 -1.19 16 29 N -0.23 -5.34 12.04 -50.00 -0.60 -5.94 16 30 H 0.07 1.76 7.18 -2.38 -0.02 1.75 16 31 H 0.04 1.56 7.18 -2.39 -0.02 1.55 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.38 20.38 6.85 -92.71 -0.64 19.75 16 36 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.41 9.83 7.34 -92.71 -0.68 9.15 16 40 H 0.24 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.15 -0.72 7.90 -2.39 -0.02 -0.74 16 43 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.11 -0.49 7.73 -2.38 -0.02 -0.51 16 45 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.08 0.16 8.14 -2.38 -0.02 0.14 16 47 H 0.08 0.54 7.74 -2.39 -0.02 0.52 16 48 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -78.58 400.07 1.03 -77.55 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.33 Total: 25.43 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.50 Total: 5.29 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -5.35 Total: -132.30 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.80 Total: -24.77 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -78.58 1.03 -77.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714442413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.291 kcal (2) G-P(sol) polarization free energy of solvation -78.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds