Wall clock time and date at job start Tue Mar 31 2020 20:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.52995 * 109.46963 * 239.99607 * 2 1 3 5 5 N 1.46897 * 109.47328 * 65.00234 * 4 2 1 6 6 C 1.46898 * 111.00586 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47335 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00208 * 0.02562 * 7 6 5 9 9 N 1.34787 * 119.99845 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00031 * 180.02562 * 9 7 6 11 11 H 1.08007 * 119.99810 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00304 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99830 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00555 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46479 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47143 * 119.99611 * 14 12 10 17 17 H 1.48493 * 109.47017 * 240.00176 * 14 12 10 18 18 C 1.53004 * 109.47128 * 119.99550 * 2 1 3 19 19 N 1.46500 * 109.47154 * 295.00563 * 18 2 1 20 20 C 1.34781 * 119.99811 * 180.02562 * 19 18 2 21 21 O 1.21283 * 119.99929 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99662 * 179.97438 * 20 19 18 23 23 C 1.50703 * 109.46568 * 179.97438 * 22 20 19 24 24 C 1.34669 * 126.59045 * 84.96050 * 23 22 20 25 25 N 1.34128 * 108.01780 * 180.02562 * 24 23 22 26 26 C 1.30495 * 109.25774 * 359.72199 * 25 24 23 27 27 N 1.35045 * 108.69990 * 0.44365 * 26 25 24 28 28 C 1.46499 * 126.39849 * 179.82112 * 27 26 25 29 29 H 1.09001 * 109.46803 * 60.00465 * 1 2 3 30 30 H 1.09000 * 109.46740 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46933 * 300.00136 * 1 2 3 32 32 H 1.09008 * 109.46866 * 184.99972 * 4 2 1 33 33 H 1.08999 * 109.47582 * 305.00159 * 4 2 1 34 34 H 1.00908 * 111.00017 * 56.04383 * 5 4 2 35 35 H 1.08998 * 109.47127 * 300.00616 * 6 5 4 36 36 H 1.08999 * 109.46644 * 59.99559 * 6 5 4 37 37 H 0.96999 * 119.99577 * 359.97438 * 9 7 6 38 38 H 0.97000 * 119.99817 * 179.97438 * 13 12 10 39 39 H 1.08996 * 109.46876 * 174.99507 * 18 2 1 40 40 H 1.09006 * 109.46795 * 54.99778 * 18 2 1 41 41 H 0.96996 * 120.00185 * 359.97438 * 19 18 2 42 42 H 1.08996 * 109.47401 * 60.00184 * 22 20 19 43 43 H 1.09006 * 109.46986 * 299.99503 * 22 20 19 44 44 H 1.08000 * 125.99191 * 0.02748 * 24 23 22 45 45 H 1.07997 * 125.65170 * 180.29145 * 26 25 24 46 46 H 1.09002 * 109.47391 * 269.69091 * 28 27 26 47 47 H 1.09001 * 109.46813 * 149.69147 * 28 27 26 48 48 H 1.09004 * 109.47041 * 29.69274 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.1258 -0.6267 -3.6671 7 6 1.7087 0.1784 -4.8708 8 8 1.0788 1.2046 -4.7254 9 7 2.0358 -0.2420 -6.1090 10 6 1.6569 0.4907 -7.2040 11 1 1.0966 1.4050 -7.0744 12 6 1.9935 0.0572 -8.4804 13 7 2.6756 -1.0550 -8.6379 14 14 1.4766 1.0551 -9.9725 15 1 0.7247 2.2562 -9.5283 16 1 2.6834 1.4783 -10.7272 17 1 0.6113 0.2244 -10.8479 18 6 2.0401 -0.7212 1.2493 19 7 1.6524 0.0355 2.4424 20 6 1.9964 -0.4129 3.6660 21 8 2.6265 -1.4430 3.7793 22 6 1.5981 0.3657 4.8932 23 6 2.1004 -0.3448 6.1237 24 6 3.3263 -0.2345 6.6702 25 7 3.3716 -1.0274 7.7510 26 6 2.2185 -1.6203 7.8985 27 7 1.3984 -1.2265 6.9004 28 6 0.0140 -1.6579 6.6916 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6054 -1.7199 -1.2951 34 1 1.9883 0.9872 -2.3967 35 1 3.2127 -0.7040 -3.6400 36 1 1.6921 -1.6247 -3.7299 37 1 2.5399 -1.0625 -6.2251 38 1 2.9103 -1.3579 -9.5290 39 1 3.1264 -0.7994 1.2056 40 1 1.6054 -1.7197 1.2953 41 1 1.1488 0.8595 2.3518 42 1 0.5119 0.4439 4.9373 43 1 2.0328 1.3643 4.8469 44 1 4.1317 0.3840 6.3025 45 1 1.9632 -2.3131 8.6866 46 1 0.0012 -2.5427 6.0552 47 1 -0.5475 -0.8566 6.2111 48 1 -0.4416 -1.8950 7.6530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714443468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:11 Heat of formation + Delta-G solvation = -17.323200 kcal Electronic energy + Delta-G solvation = -27559.388199 eV Core-core repulsion = 23457.164547 eV Total energy + Delta-G solvation = -4102.223652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44680 -39.95774 -38.39980 -37.25566 -34.94219 -34.43133 -33.88709 -32.89947 -32.05708 -31.20469 -28.03146 -27.43111 -27.38024 -26.29203 -24.75824 -23.13196 -21.79495 -21.26872 -20.77713 -20.01450 -19.20019 -17.91903 -17.58037 -17.42708 -16.44635 -16.11145 -15.88903 -15.83077 -15.61647 -15.02338 -14.69722 -14.48620 -14.34080 -14.14232 -13.95490 -13.68986 -13.49670 -13.42284 -13.31993 -13.25391 -12.99967 -12.74749 -12.50004 -12.36142 -11.95000 -11.70635 -11.53743 -11.19267 -11.11837 -11.02639 -10.93116 -10.35828 -10.31774 -10.24796 -10.22855 -9.89211 -9.53703 -9.39013 -8.67568 -8.48761 -8.08560 -7.97595 -6.43328 -3.84265 1.61440 2.27431 2.39451 2.76946 3.02109 3.15077 3.25749 3.32821 3.89050 4.06355 4.07510 4.21404 4.27784 4.38873 4.45138 4.51479 4.59368 4.66018 4.78262 4.82767 4.90871 4.93214 5.08806 5.14638 5.24233 5.28660 5.41319 5.43094 5.54137 5.62609 5.71998 5.82380 5.84074 5.96125 5.96198 6.00944 6.16315 6.24804 6.33699 6.40541 6.82680 7.13075 7.16547 7.53788 7.61663 7.76347 7.88004 8.04789 8.59463 9.16280 9.52709 10.03869 10.74442 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.001371 C = 0.001359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.956749 B =20424.451641 C =20594.722247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.077 0.923 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.509 3.491 21 O -0.528 6.528 22 C -0.064 4.064 23 C -0.011 4.011 24 C -0.007 4.007 25 N -0.494 5.494 26 C 0.183 3.817 27 N -0.455 5.455 28 C 0.070 3.930 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.348 0.652 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.401 0.599 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.167 0.833 45 H 0.205 0.795 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -0.459 29.967 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.001 3.999 19 N -0.380 5.380 20 C 0.295 3.705 21 O -0.403 6.403 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.156 4.156 25 N -0.212 5.212 26 C -0.099 4.099 27 N -0.138 5.138 28 C -0.073 4.073 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.168 0.832 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.236 0.764 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.184 0.816 45 H 0.221 0.779 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.575 -1.056 30.410 30.770 hybrid contribution 0.071 0.416 -1.512 1.569 sum -4.504 -0.640 28.898 29.254 Atomic orbital electron populations 1.21758 0.93753 1.02112 1.02073 1.21343 0.97579 0.99994 0.92953 0.90446 1.21896 0.97390 0.97958 0.89235 1.60050 1.64127 1.05840 0.99782 1.21666 0.97776 0.98660 0.90111 1.19806 0.85560 0.87922 0.84086 1.90516 1.44126 1.26442 1.85749 1.41876 1.49433 1.24275 1.04458 1.19754 1.32844 1.06705 0.83613 0.87860 1.25265 0.96907 0.96647 0.99123 1.69622 1.38916 1.21749 1.23981 0.85799 0.78277 0.79572 0.80691 1.19213 1.20772 1.20736 1.21400 1.00112 0.95352 0.83055 1.46000 1.58187 1.28055 1.05756 1.20502 0.79774 0.85934 0.84337 1.90764 1.38878 1.24152 1.86501 1.20019 1.02777 0.99453 0.88311 1.20371 0.94664 1.00196 0.97294 1.21997 0.95681 1.02738 0.95144 1.70274 1.21026 1.10895 1.18955 1.24907 0.86593 1.03348 0.95055 1.45208 1.12635 1.33747 1.22240 1.22057 0.79539 1.01764 1.03906 0.90373 0.92852 0.93762 0.95244 0.90771 0.83239 0.93851 0.89605 0.77453 0.91912 0.91413 0.91306 0.76390 0.88306 0.86410 0.81570 0.77872 0.90315 0.89803 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.95 37.16 0.33 -0.93 16 2 C -0.10 -0.87 2.57 -90.62 -0.23 -1.11 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.07 0.73 5.07 -3.83 -0.02 0.71 16 5 N -0.67 -9.97 5.58 -115.07 -0.64 -10.61 16 6 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 7 C 0.44 10.23 7.82 -10.98 -0.09 10.15 16 8 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 9 N -0.56 -14.17 5.29 -10.97 -0.06 -14.23 16 10 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 11 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 14 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 C 0.12 1.07 5.06 -4.04 -0.02 1.05 16 19 N -0.73 -5.04 5.28 -60.29 -0.32 -5.36 16 20 C 0.51 4.45 7.82 -10.98 -0.09 4.36 16 21 O -0.53 -7.19 16.03 5.55 0.09 -7.10 16 22 C -0.06 -0.36 6.04 -29.03 -0.18 -0.53 16 23 C -0.01 -0.09 5.45 -81.60 -0.44 -0.54 16 24 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 25 N -0.49 -5.77 11.25 -14.67 -0.17 -5.94 16 26 C 0.18 1.56 12.56 -90.38 -1.14 0.42 16 27 N -0.46 -3.42 3.15 -121.36 -0.38 -3.80 16 28 C 0.07 0.24 11.00 59.85 0.66 0.90 16 29 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.30 7.18 -51.93 -0.37 -0.07 16 32 H 0.03 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 1.75 7.65 -40.82 -0.31 1.44 16 42 H 0.10 0.30 7.09 -51.93 -0.37 -0.07 16 43 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.20 0.94 8.06 -52.49 -0.42 0.51 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.17 7.12 -51.93 -0.37 -0.20 16 48 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -37.28 406.05 -8.75 -46.03 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.49 Total: 11.12 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.69 Total: 7.08 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.84 Total: -63.64 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.18 Total: -22.57 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.28 -8.75 -46.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714443468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.704 kcal (2) G-P(sol) polarization free energy of solvation -37.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds