Wall clock time and date at job start Tue Mar 31 2020 20:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47170 * 2 1 4 4 C 1.52999 * 109.46992 * 120.00270 * 2 1 3 5 5 N 1.46902 * 109.47241 * 295.00064 * 4 2 1 6 6 C 1.46894 * 110.99718 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47112 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99385 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.37102 * 119.99901 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99763 * 359.97438 * 10 9 7 12 12 C 1.38943 * 119.99938 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00194 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99997 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47041 * 90.00128 * 14 12 10 16 16 H 1.48504 * 109.46871 * 209.99820 * 14 12 10 17 17 H 1.48494 * 109.47054 * 329.99910 * 14 12 10 18 18 C 1.52998 * 109.47136 * 240.00404 * 2 1 3 19 19 N 1.46501 * 109.47365 * 64.99811 * 18 2 1 20 20 C 1.34771 * 120.00143 * 179.97438 * 19 18 2 21 21 O 1.21276 * 120.00118 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.99957 * 180.02562 * 20 19 18 23 23 C 1.50697 * 109.47023 * 180.02562 * 22 20 19 24 24 C 1.34675 * 126.59403 * 85.02341 * 23 22 20 25 25 N 1.34124 * 108.02139 * 179.73770 * 24 23 22 26 26 C 1.30503 * 109.25583 * 359.97438 * 25 24 23 27 27 N 1.35041 * 108.69928 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39322 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47081 * 299.99867 * 1 2 3 31 31 H 1.09004 * 109.46925 * 59.99170 * 1 2 3 32 32 H 1.08999 * 109.46859 * 55.00053 * 4 2 1 33 33 H 1.08998 * 109.47057 * 174.99900 * 4 2 1 34 34 H 1.00901 * 110.99625 * 303.94945 * 5 4 2 35 35 H 1.08998 * 109.47643 * 299.99606 * 6 5 4 36 36 H 1.09000 * 109.47821 * 60.00297 * 6 5 4 37 37 H 0.96991 * 120.00099 * 359.97438 * 9 7 6 38 38 H 0.97000 * 120.00207 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47025 * 305.00019 * 18 2 1 40 40 H 1.08998 * 109.47559 * 185.00101 * 18 2 1 41 41 H 0.97007 * 119.99740 * 0.02562 * 19 18 2 42 42 H 1.08989 * 109.47052 * 60.00382 * 22 20 19 43 43 H 1.09002 * 109.46804 * 300.00032 * 22 20 19 44 44 H 1.07993 * 125.98561 * 359.73433 * 24 23 22 45 45 H 1.07997 * 125.64686 * 179.97438 * 26 25 24 46 46 H 1.09006 * 109.47289 * 269.95547 * 28 27 26 47 47 H 1.08996 * 109.47327 * 29.95915 * 28 27 26 48 48 H 1.09002 * 109.46825 * 149.95962 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6513 0.0373 2.4457 6 6 2.1257 -0.6267 3.6671 7 6 1.7097 0.1789 4.8708 8 8 1.0804 1.2056 4.7253 9 7 2.0379 -0.2407 6.1088 10 6 1.6589 0.4920 7.2039 11 1 1.0979 1.4057 7.0744 12 6 1.9968 0.0591 8.4802 13 7 1.6340 0.7616 9.5299 14 14 2.9666 -1.5217 8.7041 15 1 4.4199 -1.2167 8.6924 16 1 2.6024 -2.1463 10.0012 17 1 2.6484 -2.4586 7.5969 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9964 -0.4129 -3.6659 21 8 2.6264 -1.4429 -3.7793 22 6 1.5982 0.3658 -4.8932 23 6 2.1004 -0.3446 -6.1237 24 6 1.4847 -1.3467 -6.7797 25 7 2.2547 -1.6957 -7.8210 26 6 3.3239 -0.9477 -7.8355 27 7 3.2672 -0.0911 -6.7931 28 6 4.2672 0.9211 -6.4444 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.6053 -1.7198 1.2950 33 1 3.1263 -0.7995 1.2055 34 1 1.9882 0.9871 2.3967 35 1 1.6921 -1.6248 3.7300 36 1 3.2127 -0.7039 3.6400 37 1 2.5414 -1.0615 6.2251 38 1 1.8702 0.4596 10.4209 39 1 1.6054 -1.7197 -1.2952 40 1 3.1263 -0.7994 -1.2057 41 1 1.1488 0.8596 -2.3517 42 1 2.0328 1.3642 -4.8469 43 1 0.5119 0.4440 -4.9372 44 1 0.5371 -1.7913 -6.5139 45 1 4.1222 -1.0048 -8.5606 46 1 5.0030 0.4868 -5.7674 47 1 4.7659 1.2663 -7.3500 48 1 3.7768 1.7632 -5.9561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714443469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:13 Heat of formation + Delta-G solvation = -10.073128 kcal Electronic energy + Delta-G solvation = -27611.666921 eV Core-core repulsion = 23509.757656 eV Total energy + Delta-G solvation = -4101.909265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.46647 -39.99190 -38.58272 -37.34072 -35.01795 -34.45151 -33.94594 -32.94193 -32.11813 -31.65173 -28.08117 -27.56670 -27.40434 -26.35079 -24.72807 -23.06097 -21.81468 -21.29707 -20.82281 -20.04202 -19.36830 -18.35708 -17.60883 -17.45093 -16.48073 -16.15316 -15.91377 -15.86710 -15.69109 -15.08088 -14.89990 -14.56248 -14.49910 -14.08832 -14.01573 -13.62889 -13.45472 -13.43230 -13.31235 -13.21286 -13.05187 -12.79245 -12.64471 -12.45759 -12.10849 -12.05421 -11.81133 -11.28397 -11.16499 -11.11683 -10.97789 -10.61427 -10.34023 -10.26363 -9.99835 -9.91306 -9.59625 -9.42522 -8.69510 -8.62514 -8.22687 -8.16966 -6.33399 -3.85009 1.59425 2.24598 2.37341 2.74411 2.99389 3.01211 3.04956 3.13608 3.71491 4.02861 4.05375 4.08719 4.19471 4.36898 4.42202 4.48805 4.57277 4.61267 4.69080 4.77944 4.80692 4.91168 4.96442 5.07196 5.19399 5.23623 5.34925 5.39593 5.49821 5.57485 5.58503 5.73579 5.78255 5.80548 5.90763 5.94201 5.97828 6.12512 6.31991 6.38612 6.80698 7.02999 7.09927 7.51566 7.55976 7.74436 7.84942 8.11974 8.57302 8.92490 9.40070 9.80014 10.79665 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.001436 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.893422 B =19493.692762 C =19682.967812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.665 5.665 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.510 3.490 21 O -0.528 6.528 22 C -0.064 4.064 23 C -0.011 4.011 24 C -0.007 4.007 25 N -0.494 5.494 26 C 0.183 3.817 27 N -0.455 5.455 28 C 0.070 3.930 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.350 0.650 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.402 0.598 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.167 0.833 45 H 0.205 0.795 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -0.475 -31.976 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.435 4.435 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 C 0.001 3.999 19 N -0.380 5.380 20 C 0.295 3.705 21 O -0.403 6.403 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.155 4.155 25 N -0.211 5.211 26 C -0.099 4.099 27 N -0.138 5.138 28 C -0.073 4.073 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.169 0.831 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.236 0.764 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.184 0.816 45 H 0.221 0.779 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.013 -1.292 -32.397 32.670 hybrid contribution 1.819 -0.050 1.106 2.130 sum 5.833 -1.342 -31.291 31.858 Atomic orbital electron populations 1.21764 0.93588 1.02254 1.02183 1.21340 0.97733 0.99908 0.92879 0.90494 1.21902 0.97328 0.98016 0.89210 1.60034 1.64139 1.05902 0.99700 1.21703 0.97818 0.98730 0.90229 1.19704 0.85216 0.87900 0.83638 1.90561 1.42851 1.25898 1.85435 1.42209 1.51043 1.23705 1.06014 1.19433 1.33746 1.07599 0.82694 0.86282 1.25035 0.97839 0.98073 0.95153 1.69620 1.45547 1.38533 0.98388 0.86673 0.80774 0.83286 0.78666 1.19675 1.20136 1.19460 1.21393 0.99909 0.95531 0.83081 1.45998 1.58223 1.28054 1.05740 1.20501 0.79750 0.85941 0.84319 1.90761 1.39052 1.24020 1.86479 1.20019 1.03590 0.98607 0.88348 1.20369 0.89930 1.03759 0.98488 1.21998 1.01475 0.97507 0.94566 1.70278 1.03933 1.25150 1.21778 1.24910 1.00163 0.91333 0.93490 1.45207 1.16917 1.28875 1.22838 1.22056 0.91426 0.90834 1.02955 0.92742 0.90363 0.93619 0.90675 0.95285 0.83087 0.89441 0.93771 0.79678 0.91597 0.91135 0.91620 0.76359 0.88307 0.86385 0.81557 0.77868 0.90344 0.89181 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.95 37.16 0.33 -0.90 16 2 C -0.10 -0.82 2.57 -90.62 -0.23 -1.05 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 4 C 0.07 0.68 5.07 -3.82 -0.02 0.66 16 5 N -0.67 -9.39 5.58 -115.06 -0.64 -10.03 16 6 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 7 C 0.45 9.96 7.82 -10.98 -0.09 9.88 16 8 O -0.57 -14.82 15.78 5.54 0.09 -14.74 16 9 N -0.59 -13.86 5.09 -10.96 -0.06 -13.92 16 10 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 14 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 18 C 0.12 1.01 5.06 -4.04 -0.02 0.99 16 19 N -0.73 -4.79 5.28 -60.29 -0.32 -5.11 16 20 C 0.51 4.30 7.82 -10.98 -0.09 4.21 16 21 O -0.53 -7.02 16.03 5.56 0.09 -6.93 16 22 C -0.06 -0.34 6.04 -29.03 -0.18 -0.52 16 23 C -0.01 -0.09 5.45 -81.60 -0.44 -0.54 16 24 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 25 N -0.49 -5.67 11.25 -14.67 -0.17 -5.84 16 26 C 0.18 1.53 12.56 -90.37 -1.14 0.39 16 27 N -0.46 -3.34 3.15 -121.37 -0.38 -3.72 16 28 C 0.07 0.23 11.01 59.85 0.66 0.89 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 31 H 0.04 0.31 7.18 -51.93 -0.37 -0.06 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.35 5.09 8.43 -39.29 -0.33 4.76 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 1.63 7.66 -40.82 -0.31 1.31 16 42 H 0.10 0.28 7.09 -51.93 -0.37 -0.09 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 48 H 0.08 0.16 7.11 -51.93 -0.37 -0.21 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -38.47 402.92 -8.40 -46.86 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.44 Total: 10.87 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.70 Total: 6.77 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.79 Total: -63.39 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.18 Total: -21.67 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.47 -8.40 -46.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714443469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.790 kcal (2) G-P(sol) polarization free energy of solvation -38.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds