Wall clock time and date at job start Tue Mar 31 2020 20:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47170 * 2 1 4 4 C 1.52999 * 109.46992 * 120.00270 * 2 1 3 5 5 N 1.46902 * 109.47241 * 295.00064 * 4 2 1 6 6 C 1.46894 * 110.99718 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47112 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99385 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.37102 * 119.99901 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99763 * 359.97438 * 10 9 7 12 12 C 1.38943 * 119.99938 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00194 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99997 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47041 * 90.00128 * 14 12 10 16 16 H 1.48504 * 109.46871 * 209.99820 * 14 12 10 17 17 H 1.48494 * 109.47054 * 329.99910 * 14 12 10 18 18 C 1.52998 * 109.47136 * 240.00404 * 2 1 3 19 19 N 1.46501 * 109.47365 * 64.99811 * 18 2 1 20 20 C 1.34771 * 120.00143 * 179.97438 * 19 18 2 21 21 O 1.21276 * 120.00118 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.99957 * 180.02562 * 20 19 18 23 23 C 1.50697 * 109.47023 * 180.02562 * 22 20 19 24 24 C 1.34675 * 126.59403 * 85.02341 * 23 22 20 25 25 N 1.34124 * 108.02139 * 179.73770 * 24 23 22 26 26 C 1.30503 * 109.25583 * 359.97438 * 25 24 23 27 27 N 1.35041 * 108.69928 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39322 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47081 * 299.99867 * 1 2 3 31 31 H 1.09004 * 109.46925 * 59.99170 * 1 2 3 32 32 H 1.08999 * 109.46859 * 55.00053 * 4 2 1 33 33 H 1.08998 * 109.47057 * 174.99900 * 4 2 1 34 34 H 1.00901 * 110.99625 * 303.94945 * 5 4 2 35 35 H 1.08998 * 109.47643 * 299.99606 * 6 5 4 36 36 H 1.09000 * 109.47821 * 60.00297 * 6 5 4 37 37 H 0.96991 * 120.00099 * 359.97438 * 9 7 6 38 38 H 0.97000 * 120.00207 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47025 * 305.00019 * 18 2 1 40 40 H 1.08998 * 109.47559 * 185.00101 * 18 2 1 41 41 H 0.97007 * 119.99740 * 0.02562 * 19 18 2 42 42 H 1.08989 * 109.47052 * 60.00382 * 22 20 19 43 43 H 1.09002 * 109.46804 * 300.00032 * 22 20 19 44 44 H 1.07993 * 125.98561 * 359.73433 * 24 23 22 45 45 H 1.07997 * 125.64686 * 179.97438 * 26 25 24 46 46 H 1.09006 * 109.47289 * 269.95547 * 28 27 26 47 47 H 1.08996 * 109.47327 * 29.95915 * 28 27 26 48 48 H 1.09002 * 109.46825 * 149.95962 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6513 0.0373 2.4457 6 6 2.1257 -0.6267 3.6671 7 6 1.7097 0.1789 4.8708 8 8 1.0804 1.2056 4.7253 9 7 2.0379 -0.2407 6.1088 10 6 1.6589 0.4920 7.2039 11 1 1.0979 1.4057 7.0744 12 6 1.9968 0.0591 8.4802 13 7 1.6340 0.7616 9.5299 14 14 2.9666 -1.5217 8.7041 15 1 4.4199 -1.2167 8.6924 16 1 2.6024 -2.1463 10.0012 17 1 2.6484 -2.4586 7.5969 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9964 -0.4129 -3.6659 21 8 2.6264 -1.4429 -3.7793 22 6 1.5982 0.3658 -4.8932 23 6 2.1004 -0.3446 -6.1237 24 6 1.4847 -1.3467 -6.7797 25 7 2.2547 -1.6957 -7.8210 26 6 3.3239 -0.9477 -7.8355 27 7 3.2672 -0.0911 -6.7931 28 6 4.2672 0.9211 -6.4444 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.6053 -1.7198 1.2950 33 1 3.1263 -0.7995 1.2055 34 1 1.9882 0.9871 2.3967 35 1 1.6921 -1.6248 3.7300 36 1 3.2127 -0.7039 3.6400 37 1 2.5414 -1.0615 6.2251 38 1 1.8702 0.4596 10.4209 39 1 1.6054 -1.7197 -1.2952 40 1 3.1263 -0.7994 -1.2057 41 1 1.1488 0.8596 -2.3517 42 1 2.0328 1.3642 -4.8469 43 1 0.5119 0.4440 -4.9372 44 1 0.5371 -1.7913 -6.5139 45 1 4.1222 -1.0048 -8.5606 46 1 5.0030 0.4868 -5.7674 47 1 4.7659 1.2663 -7.3500 48 1 3.7768 1.7632 -5.9561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714443469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:12 Heat of formation + Delta-G solvation = -40.757862 kcal Electronic energy + Delta-G solvation = -27612.997511 eV Core-core repulsion = 23509.757656 eV Total energy + Delta-G solvation = -4103.239855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.03512 -40.68180 -40.28708 -38.27268 -36.20446 -35.66294 -34.96345 -33.79775 -33.60549 -32.78228 -29.06639 -28.50413 -27.78570 -27.17407 -26.20463 -24.26519 -22.41278 -21.93198 -21.60498 -21.22308 -20.63334 -20.17071 -18.22797 -18.01057 -17.73945 -17.05946 -16.95160 -16.73154 -16.56466 -16.40666 -15.76308 -15.73117 -15.24118 -15.22468 -14.94785 -14.63800 -14.48153 -14.44535 -14.35537 -13.96688 -13.83629 -13.74444 -13.48322 -13.31697 -13.21874 -13.04092 -12.92566 -12.82303 -12.41475 -12.01034 -11.98020 -11.91733 -11.69150 -11.50949 -11.05031 -10.93282 -10.47977 -10.42471 -10.24565 -10.07828 -9.30747 -9.28976 -8.41233 -6.02078 1.02076 1.30750 1.35302 1.44553 1.64078 1.92592 1.96372 2.13064 2.22936 2.36160 2.77466 3.15577 3.43487 3.57218 3.88061 3.89170 3.91091 3.98782 4.06660 4.08055 4.14602 4.19430 4.34844 4.44310 4.47461 4.52379 4.55730 4.59962 4.65147 4.72076 4.79007 4.83134 4.86395 4.99130 5.11663 5.29791 5.39684 5.46726 5.52812 5.56994 5.79067 5.90845 6.05070 6.31025 6.41823 6.57616 6.60101 6.88335 7.13242 7.27635 7.40303 7.96647 8.76323 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.001436 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.893422 B =19493.692762 C =19682.967812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.086 0.914 4 C 0.066 3.934 5 N -0.681 5.681 6 C 0.062 3.938 7 C 0.449 3.551 8 O -0.613 6.613 9 N -0.592 5.592 10 C -0.329 4.329 11 H 0.056 0.944 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.133 3.867 19 N -0.714 5.714 20 C 0.511 3.489 21 O -0.582 6.582 22 C -0.057 4.057 23 C -0.011 4.011 24 C -0.045 4.045 25 N -0.541 5.541 26 C 0.176 3.824 27 N -0.456 5.456 28 C 0.063 3.937 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.345 0.655 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.417 0.583 42 H 0.133 0.867 43 H 0.144 0.856 44 H 0.166 0.834 45 H 0.235 0.765 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 -1.436 -33.521 34.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.104 0.896 4 C -0.063 4.063 5 N -0.313 5.313 6 C -0.071 4.071 7 C 0.237 3.763 8 O -0.497 6.497 9 N -0.234 5.234 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.212 4.212 13 N -0.575 5.575 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.201 1.201 17 H -0.155 1.155 18 C 0.008 3.992 19 N -0.367 5.367 20 C 0.298 3.702 21 O -0.461 6.461 22 C -0.098 4.098 23 C -0.127 4.127 24 C -0.193 4.193 25 N -0.259 5.259 26 C -0.106 4.106 27 N -0.138 5.138 28 C -0.078 4.078 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.255 0.745 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.184 0.816 45 H 0.251 0.749 46 H 0.092 0.908 47 H 0.133 0.867 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.853 -2.221 -33.962 34.534 hybrid contribution 1.184 0.380 1.535 1.976 sum 7.037 -1.840 -32.427 33.232 Atomic orbital electron populations 1.21716 0.93952 1.01836 1.01964 1.21204 0.97192 1.00139 0.92056 0.89600 1.21977 0.98284 0.97804 0.88252 1.60028 1.64856 1.06049 1.00370 1.21619 0.99752 0.98122 0.87591 1.21000 0.83054 0.87412 0.84860 1.90540 1.44527 1.28304 1.86376 1.42047 1.51793 1.24171 1.05355 1.19020 1.34770 1.06922 0.85159 0.92582 1.26091 0.98602 1.02692 0.93857 1.69802 1.47168 1.41237 0.99268 0.85379 0.78958 0.77643 0.79632 1.18149 1.20110 1.15524 1.21200 0.99433 0.95131 0.83415 1.45870 1.57645 1.28266 1.04909 1.20978 0.78634 0.85278 0.85299 1.90748 1.41675 1.26488 1.87213 1.20130 1.05290 0.99065 0.85306 1.20752 0.89967 1.03097 0.98887 1.22232 1.02319 0.99125 0.95575 1.70196 1.05565 1.27059 1.23125 1.25524 1.00045 0.90821 0.94195 1.45473 1.17075 1.29078 1.22160 1.22363 0.90775 0.90312 1.04391 0.93261 0.92989 0.91419 0.90358 0.93885 0.83597 0.87124 0.90577 0.77509 0.91165 0.92309 0.92163 0.74541 0.84947 0.83815 0.81633 0.74885 0.90788 0.86690 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.95 71.98 0.64 -1.52 16 2 C -0.09 -1.23 2.57 -10.79 -0.03 -1.26 16 3 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 4 C 0.07 1.19 5.07 86.30 0.44 1.62 16 5 N -0.68 -17.90 5.58 -517.94 -2.89 -20.79 16 6 C 0.06 1.77 6.17 85.56 0.53 2.30 16 7 C 0.45 19.70 7.82 87.66 0.69 20.38 16 8 O -0.61 -33.11 15.78 -3.08 -0.05 -33.15 16 9 N -0.59 -27.46 5.09 -306.98 -1.56 -29.02 16 10 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 11 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 12 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 13 N -0.93 -55.96 13.96 21.66 0.30 -55.66 16 14 Si 0.96 38.41 27.74 68.60 1.90 40.31 16 15 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 16 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 18 C 0.13 1.87 5.06 86.38 0.44 2.31 16 19 N -0.71 -7.54 5.28 -463.07 -2.45 -9.98 16 20 C 0.51 7.62 7.82 87.66 0.69 8.30 16 21 O -0.58 -15.11 16.03 -3.02 -0.05 -15.16 16 22 C -0.06 -0.46 6.04 29.10 0.18 -0.28 16 23 C -0.01 -0.17 5.45 40.95 0.22 0.05 16 24 C -0.04 -0.95 11.79 83.53 0.98 0.04 16 25 N -0.54 -12.71 11.25 -200.32 -2.25 -14.96 16 26 C 0.18 2.82 12.56 180.26 2.26 5.08 16 27 N -0.46 -5.95 3.15 -537.89 -1.70 -7.64 16 28 C 0.06 0.25 11.01 127.77 1.41 1.65 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 1.12 7.75 -2.39 -0.02 1.11 16 31 H 0.07 0.74 7.18 -2.38 -0.02 0.73 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.35 9.61 8.43 -89.69 -0.76 8.85 16 35 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.39 14.92 5.76 -92.72 -0.53 14.39 16 38 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.42 1.91 7.66 -92.70 -0.71 1.20 16 42 H 0.13 0.17 7.09 -2.39 -0.02 0.15 16 43 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 45 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 47 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.10 0.01 7.11 -2.39 -0.02 -0.01 16 Total: -1.00 -91.71 402.92 -0.03 -91.74 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -1.06 Total: 34.22 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 9.77 Total: 20.11 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -10.55 Total: -138.06 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.10 Total: -48.32 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.31 kcal Total: -91.71 -0.03 -91.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714443469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.981 kcal (2) G-P(sol) polarization free energy of solvation -91.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds