Wall clock time and date at job start Tue Mar 31 2020 20:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47377 * 2 1 4 4 C 1.34262 * 125.75574 * 124.99545 * 3 2 1 5 5 C 1.38040 * 107.41813 * 180.02562 * 4 3 2 6 6 C 1.47429 * 126.41255 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00549 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00129 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00337 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.46975 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.46831 * 54.99657 * 11 10 9 13 13 C 1.52998 * 109.47211 * 175.00015 * 11 10 9 14 14 N 1.46906 * 109.47010 * 295.00047 * 11 10 9 15 15 C 1.46898 * 110.99888 * 155.00014 * 14 11 10 16 16 C 1.50705 * 109.46661 * 180.02562 * 15 14 11 17 17 O 1.21288 * 120.00125 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99549 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00062 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99229 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00207 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99885 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00123 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47257 * 59.99848 * 23 21 19 25 25 H 1.48495 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46784 * 300.00182 * 23 21 19 27 27 C 1.41290 * 107.17085 * 0.22802 * 5 4 3 28 28 N 1.30444 * 108.02058 * 359.61361 * 27 5 4 29 29 H 1.08994 * 109.46965 * 300.00272 * 1 2 3 30 30 H 1.09004 * 109.46404 * 60.00063 * 1 2 3 31 31 H 1.08999 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47509 * 239.99931 * 2 1 3 33 33 H 1.09003 * 109.47133 * 120.00074 * 2 1 3 34 34 H 1.08000 * 126.28885 * 0.04620 * 4 3 2 35 35 H 0.97001 * 119.99472 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46838 * 60.00723 * 9 8 6 37 37 H 1.09000 * 109.47505 * 300.00502 * 9 8 6 38 38 H 1.08995 * 109.47218 * 60.00757 * 10 9 8 39 39 H 1.09000 * 109.47102 * 299.99815 * 10 9 8 40 40 H 1.09001 * 109.47093 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47121 * 299.99744 * 13 11 10 42 42 H 1.09002 * 109.46901 * 59.99641 * 13 11 10 43 43 H 1.00902 * 110.99923 * 278.95955 * 14 11 10 44 44 H 1.08995 * 109.47296 * 299.99911 * 15 14 11 45 45 H 1.08997 * 109.47334 * 60.00212 * 15 14 11 46 46 H 0.97003 * 120.00664 * 0.02562 * 18 16 15 47 47 H 0.97010 * 119.99812 * 180.02562 * 22 21 19 48 48 H 1.07999 * 125.98158 * 179.73641 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8691 1.9125 0.8926 5 6 3.0706 3.2310 0.5371 6 6 3.9315 4.2036 1.2346 7 8 4.5495 3.8672 2.2264 8 7 4.0345 5.4655 0.7724 9 6 4.8895 6.4321 1.4657 10 6 4.8277 7.7787 0.7420 11 6 5.7212 8.7881 1.4658 12 1 6.7306 8.3854 1.5493 13 6 5.7580 10.0966 0.6737 14 7 5.1832 9.0436 2.8087 15 6 6.2413 9.4938 3.7228 16 6 5.6530 9.7447 5.0874 17 8 4.4687 9.5665 5.2793 18 7 6.4428 10.1671 6.0944 19 6 5.9076 10.3959 7.3357 20 1 4.8531 10.2371 7.5066 21 6 6.7220 10.8308 8.3741 22 7 8.0052 11.0235 8.1662 23 14 5.9928 11.1418 10.0656 24 1 5.3907 9.8870 10.5834 25 1 7.0625 11.5964 10.9898 26 1 4.9453 12.1900 9.9679 27 6 2.2928 3.4755 -0.6168 28 7 1.6766 2.3693 -0.9299 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3142 1.4019 1.7338 35 1 3.5418 5.7337 -0.0190 36 1 5.9173 6.0693 1.4717 37 1 4.5415 6.5550 2.4914 38 1 3.7999 8.1414 0.7364 39 1 5.1755 7.6562 -0.2837 40 1 6.3941 10.8158 1.1896 41 1 6.1572 9.9070 -0.3227 42 1 4.7485 10.4992 0.5901 43 1 4.4269 9.7107 2.7744 44 1 7.0105 8.7250 3.7949 45 1 6.6827 10.4149 3.3421 46 1 7.3899 10.3101 5.9408 47 1 8.5738 11.3268 8.8912 48 1 2.2226 4.4134 -1.1477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714459871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:04 Heat of formation + Delta-G solvation = -6.048094 kcal Electronic energy + Delta-G solvation = -27764.561355 eV Core-core repulsion = 23662.826629 eV Total energy + Delta-G solvation = -4101.734726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66236 -39.21930 -38.38696 -37.00488 -34.96580 -34.66967 -33.83231 -31.58997 -31.07727 -30.88629 -30.11218 -28.52505 -26.26750 -24.71206 -24.03289 -23.50802 -22.19552 -21.00127 -20.83255 -19.95726 -19.18220 -18.16333 -17.82410 -16.30667 -16.09167 -15.97995 -15.79728 -15.57066 -15.18287 -14.89946 -14.58593 -14.50531 -14.34302 -13.92514 -13.82871 -13.64623 -13.26264 -13.11097 -13.04034 -12.86000 -12.65443 -12.61057 -12.11975 -11.99715 -11.85548 -11.52405 -11.46366 -11.35541 -11.18718 -11.13858 -10.97006 -10.80866 -10.40183 -10.16251 -9.94279 -9.85043 -9.44712 -9.11819 -8.81324 -8.40014 -7.97534 -7.89722 -6.36508 -3.77077 1.29091 1.92052 1.96122 3.24194 3.26806 3.29277 3.34087 3.44440 3.97345 3.97548 4.14521 4.38162 4.38613 4.43368 4.50813 4.65232 4.78522 4.87630 5.01487 5.04673 5.11049 5.17653 5.24664 5.27938 5.31952 5.37170 5.40856 5.53743 5.58532 5.62012 5.73993 5.82963 5.89916 6.04822 6.08858 6.14810 6.17015 6.34354 6.37395 6.47070 6.53880 7.19670 7.29014 7.57608 7.60041 7.73197 8.11789 8.33161 8.67118 9.23317 9.60262 10.12059 10.81216 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.001821 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.781600 B =15375.976560 C =16870.050774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.362 5.362 4 C 0.127 3.873 5 C -0.291 4.291 6 C 0.591 3.409 7 O -0.546 6.546 8 N -0.727 5.727 9 C 0.124 3.876 10 C -0.115 4.115 11 C 0.085 3.915 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.662 5.662 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.080 3.920 28 N -0.297 5.297 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.395 0.605 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.350 0.650 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 -16.572 -22.439 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.141 5.141 4 C -0.024 4.024 5 C -0.306 4.306 6 C 0.378 3.622 7 O -0.424 6.424 8 N -0.378 5.378 9 C 0.002 3.998 10 C -0.154 4.154 11 C -0.027 4.027 12 H 0.098 0.902 13 C -0.242 4.242 14 N -0.294 5.294 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.108 4.108 28 N -0.117 5.117 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.169 0.831 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.036 -18.240 -22.060 30.016 hybrid contribution 0.846 1.755 0.646 2.053 sum -8.190 -16.485 -21.414 28.238 Atomic orbital electron populations 1.22064 0.93348 1.03161 1.03842 1.21840 0.96487 0.76849 1.04314 1.48639 1.34389 1.10619 1.20502 1.23027 0.91444 0.93717 0.94260 1.20326 1.11433 0.95469 1.03388 1.17209 0.80430 0.81366 0.83216 1.90810 1.46814 1.78788 1.26029 1.45799 1.49330 1.10865 1.31757 1.21372 0.94222 0.86405 0.97843 1.21748 1.01070 0.94306 0.98235 1.21508 0.98426 0.94136 0.88584 0.90214 1.22515 1.02258 0.98603 1.00786 1.60201 1.10503 1.52212 1.06513 1.21696 0.94438 0.99253 0.92815 1.19837 0.87565 0.84024 0.85883 1.90522 1.15990 1.56631 1.83548 1.41858 1.10649 1.58549 1.09087 1.19654 0.95998 1.41672 0.85508 0.88011 1.25248 0.95241 0.97379 1.00091 1.69609 1.04136 1.46734 1.33927 0.85924 0.78197 0.78947 0.81175 1.19887 1.21018 1.19979 1.24051 0.94202 0.97404 0.95154 1.77110 1.23909 0.97079 1.13586 0.91838 0.90947 0.90423 0.89295 0.88144 0.79495 0.77187 0.92010 0.89269 0.91131 0.91537 0.92391 0.92247 0.92327 0.83056 0.89608 0.93911 0.77486 0.91890 0.79445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.09 37.16 0.37 -0.36 16 2 C 0.13 0.57 7.21 -4.04 -0.03 0.54 16 3 N -0.36 -3.00 3.65 -60.81 -0.22 -3.22 16 4 C 0.13 1.18 11.25 -16.56 -0.19 0.99 16 5 C -0.29 -3.12 6.13 -105.07 -0.64 -3.76 16 6 C 0.59 7.84 7.81 -12.52 -0.10 7.75 16 7 O -0.55 -9.62 16.90 5.27 0.09 -9.53 16 8 N -0.73 -7.83 5.55 -61.38 -0.34 -8.17 16 9 C 0.12 1.54 5.56 -4.04 -0.02 1.52 16 10 C -0.12 -1.12 5.01 -26.73 -0.13 -1.25 16 11 C 0.08 0.96 2.59 -67.71 -0.18 0.79 16 12 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 13 C -0.18 -1.78 9.16 37.16 0.34 -1.44 16 14 N -0.66 -10.32 5.33 -107.99 -0.58 -10.90 16 15 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 16 C 0.44 10.58 7.82 -10.98 -0.09 10.50 16 17 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 18 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 19 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 23 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.08 0.71 11.50 -16.98 -0.20 0.51 16 28 N -0.30 -2.90 12.33 30.86 0.38 -2.52 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.23 8.06 -51.93 -0.42 -0.19 16 34 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.39 2.91 7.43 -40.82 -0.30 2.61 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.44 7.75 -51.93 -0.40 1.04 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 43 H 0.35 5.67 8.17 -39.29 -0.32 5.35 16 44 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 45 H 0.04 0.68 7.44 -51.93 -0.39 0.29 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 47 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.19 1.00 7.50 -52.49 -0.39 0.61 16 LS Contribution 408.36 15.07 6.15 6.15 Total: -1.00 -36.77 408.36 -7.40 -44.17 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.50 Total: 13.92 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.12 Total: 8.50 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.09 Total: -63.67 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.18 Total: -25.53 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.77 -7.40 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714459871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.125 kcal (2) G-P(sol) polarization free energy of solvation -36.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds