Wall clock time and date at job start Tue Mar 31 2020 20:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47377 * 2 1 4 4 C 1.34262 * 125.75574 * 124.99545 * 3 2 1 5 5 C 1.38040 * 107.41813 * 180.02562 * 4 3 2 6 6 C 1.47429 * 126.41255 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00549 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00129 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00337 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.46975 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.46831 * 54.99657 * 11 10 9 13 13 C 1.52998 * 109.47211 * 175.00015 * 11 10 9 14 14 N 1.46906 * 109.47010 * 295.00047 * 11 10 9 15 15 C 1.46898 * 110.99888 * 155.00014 * 14 11 10 16 16 C 1.50705 * 109.46661 * 180.02562 * 15 14 11 17 17 O 1.21288 * 120.00125 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99549 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00062 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99229 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00207 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99885 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00123 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47257 * 59.99848 * 23 21 19 25 25 H 1.48495 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46784 * 300.00182 * 23 21 19 27 27 C 1.41290 * 107.17085 * 0.22802 * 5 4 3 28 28 N 1.30444 * 108.02058 * 359.61361 * 27 5 4 29 29 H 1.08994 * 109.46965 * 300.00272 * 1 2 3 30 30 H 1.09004 * 109.46404 * 60.00063 * 1 2 3 31 31 H 1.08999 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47509 * 239.99931 * 2 1 3 33 33 H 1.09003 * 109.47133 * 120.00074 * 2 1 3 34 34 H 1.08000 * 126.28885 * 0.04620 * 4 3 2 35 35 H 0.97001 * 119.99472 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46838 * 60.00723 * 9 8 6 37 37 H 1.09000 * 109.47505 * 300.00502 * 9 8 6 38 38 H 1.08995 * 109.47218 * 60.00757 * 10 9 8 39 39 H 1.09000 * 109.47102 * 299.99815 * 10 9 8 40 40 H 1.09001 * 109.47093 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47121 * 299.99744 * 13 11 10 42 42 H 1.09002 * 109.46901 * 59.99641 * 13 11 10 43 43 H 1.00902 * 110.99923 * 278.95955 * 14 11 10 44 44 H 1.08995 * 109.47296 * 299.99911 * 15 14 11 45 45 H 1.08997 * 109.47334 * 60.00212 * 15 14 11 46 46 H 0.97003 * 120.00664 * 0.02562 * 18 16 15 47 47 H 0.97010 * 119.99812 * 180.02562 * 22 21 19 48 48 H 1.07999 * 125.98158 * 179.73641 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8691 1.9125 0.8926 5 6 3.0706 3.2310 0.5371 6 6 3.9315 4.2036 1.2346 7 8 4.5495 3.8672 2.2264 8 7 4.0345 5.4655 0.7724 9 6 4.8895 6.4321 1.4657 10 6 4.8277 7.7787 0.7420 11 6 5.7212 8.7881 1.4658 12 1 6.7306 8.3854 1.5493 13 6 5.7580 10.0966 0.6737 14 7 5.1832 9.0436 2.8087 15 6 6.2413 9.4938 3.7228 16 6 5.6530 9.7447 5.0874 17 8 4.4687 9.5665 5.2793 18 7 6.4428 10.1671 6.0944 19 6 5.9076 10.3959 7.3357 20 1 4.8531 10.2371 7.5066 21 6 6.7220 10.8308 8.3741 22 7 8.0052 11.0235 8.1662 23 14 5.9928 11.1418 10.0656 24 1 5.3907 9.8870 10.5834 25 1 7.0625 11.5964 10.9898 26 1 4.9453 12.1900 9.9679 27 6 2.2928 3.4755 -0.6168 28 7 1.6766 2.3693 -0.9299 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3142 1.4019 1.7338 35 1 3.5418 5.7337 -0.0190 36 1 5.9173 6.0693 1.4717 37 1 4.5415 6.5550 2.4914 38 1 3.7999 8.1414 0.7364 39 1 5.1755 7.6562 -0.2837 40 1 6.3941 10.8158 1.1896 41 1 6.1572 9.9070 -0.3227 42 1 4.7485 10.4992 0.5901 43 1 4.4269 9.7107 2.7744 44 1 7.0105 8.7250 3.7949 45 1 6.6827 10.4149 3.3421 46 1 7.3899 10.3101 5.9408 47 1 8.5738 11.3268 8.8912 48 1 2.2226 4.4134 -1.1477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714459871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:03 Heat of formation + Delta-G solvation = -35.220822 kcal Electronic energy + Delta-G solvation = -27765.826380 eV Core-core repulsion = 23662.826629 eV Total energy + Delta-G solvation = -4102.999751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35906 -40.31235 -40.08233 -38.24022 -36.04230 -35.70496 -35.38775 -33.30612 -32.59378 -31.55809 -30.87554 -29.35125 -27.93076 -25.84379 -25.19165 -24.34719 -23.08909 -21.83985 -21.57653 -21.13046 -20.76391 -19.90202 -18.90579 -17.71794 -17.04547 -16.82986 -16.79996 -16.69794 -16.48305 -16.30450 -15.90826 -15.60896 -15.37690 -15.21040 -14.96635 -14.68463 -14.37857 -14.17178 -14.01538 -13.78164 -13.52234 -13.47033 -13.37125 -13.07314 -12.98713 -12.81712 -12.62608 -12.49315 -12.43019 -12.21000 -12.14775 -12.06512 -11.88597 -11.68166 -11.49447 -10.90278 -10.59129 -10.32625 -10.10463 -10.00554 -9.61187 -9.19928 -8.45789 -5.94559 0.53767 1.18370 1.39784 1.39946 1.41162 1.52356 2.07206 2.29753 2.37895 2.51014 2.98317 3.21470 3.47017 3.58751 3.79148 3.93408 4.00509 4.06337 4.11270 4.19996 4.27942 4.34751 4.38793 4.41463 4.49301 4.54100 4.58780 4.64886 4.74435 4.79423 4.83229 4.88076 4.95275 5.08898 5.20517 5.25752 5.32171 5.36403 5.41170 5.44236 5.58991 5.87488 5.94031 6.18126 6.50470 6.51513 6.61449 6.71878 7.13476 7.38311 7.57646 8.13380 8.71374 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.001821 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.781600 B =15375.976560 C =16870.050774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.127 3.873 5 C -0.316 4.316 6 C 0.587 3.413 7 O -0.601 6.601 8 N -0.712 5.712 9 C 0.130 3.870 10 C -0.102 4.102 11 C 0.083 3.917 12 H 0.083 0.917 13 C -0.175 4.175 14 N -0.678 5.678 15 C 0.067 3.933 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.271 1.271 27 C 0.087 3.913 28 N -0.319 5.319 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.201 0.799 35 H 0.414 0.586 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.344 0.656 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 -16.880 -24.261 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.026 4.026 5 C -0.331 4.331 6 C 0.376 3.624 7 O -0.483 6.483 8 N -0.363 5.363 9 C 0.006 3.994 10 C -0.141 4.141 11 C -0.027 4.027 12 H 0.101 0.899 13 C -0.234 4.234 14 N -0.310 5.310 15 C -0.066 4.066 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.212 5.212 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.196 1.196 27 C -0.100 4.100 28 N -0.139 5.139 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.217 0.783 35 H 0.251 0.749 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.163 0.837 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.080 -18.543 -23.961 31.629 hybrid contribution 0.820 1.761 1.151 2.258 sum -8.260 -16.782 -22.810 29.498 Atomic orbital electron populations 1.22026 0.93226 1.04276 1.02353 1.22240 0.96587 0.75292 1.06268 1.48966 1.33567 1.11509 1.19593 1.23313 0.91168 0.93646 0.94500 1.20246 1.12551 0.95686 1.04659 1.17636 0.80006 0.82195 0.82595 1.90773 1.49218 1.79827 1.28499 1.45641 1.48777 1.09917 1.31936 1.21183 0.93604 0.88256 0.96316 1.21693 1.01296 0.91810 0.99269 1.21645 0.98737 0.95597 0.86711 0.89910 1.22427 1.02438 0.96994 1.01550 1.60206 1.10115 1.51995 1.08696 1.21525 0.94764 1.00823 0.89447 1.20972 0.87008 0.81894 0.87677 1.90486 1.17962 1.57847 1.84712 1.41937 1.10969 1.59246 1.09019 1.19631 0.95414 1.44009 0.87447 0.90446 1.26038 0.95607 0.96415 1.03243 1.69671 1.04834 1.46418 1.35155 0.84994 0.77861 0.78693 0.76803 1.19938 1.19345 1.19586 1.24493 0.92877 0.98320 0.94318 1.77082 1.24626 0.97685 1.14493 0.93104 0.92534 0.88025 0.87957 0.85629 0.78258 0.74928 0.92983 0.93657 0.90605 0.87976 0.93266 0.89777 0.92106 0.83654 0.88403 0.91472 0.77007 0.91311 0.76477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 10.09 71.98 0.73 -0.49 16 2 C 0.11 0.85 7.21 86.38 0.62 1.47 16 3 N -0.36 -5.53 3.65 -346.30 -1.26 -6.79 16 4 C 0.13 2.29 11.25 84.27 0.95 3.24 16 5 C -0.32 -6.65 6.13 -20.15 -0.12 -6.77 16 6 C 0.59 15.82 7.81 86.66 0.68 16.50 16 7 O -0.60 -22.15 16.90 -4.05 -0.07 -22.22 16 8 N -0.71 -14.91 5.55 -466.37 -2.59 -17.49 16 9 C 0.13 3.20 5.56 86.38 0.48 3.68 16 10 C -0.10 -1.76 5.01 30.60 0.15 -1.61 16 11 C 0.08 1.73 2.59 44.92 0.12 1.85 16 12 H 0.08 1.70 7.80 -2.39 -0.02 1.69 16 13 C -0.18 -2.93 9.16 71.98 0.66 -2.27 16 14 N -0.68 -20.92 5.33 -495.56 -2.64 -23.55 16 15 C 0.07 2.34 5.97 85.56 0.51 2.85 16 16 C 0.44 21.47 7.82 87.66 0.69 22.15 16 17 O -0.62 -35.68 15.78 -3.05 -0.05 -35.72 16 18 N -0.57 -30.43 5.29 -306.99 -1.62 -32.05 16 19 C -0.34 -19.64 9.68 84.04 0.81 -18.82 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 22 N -0.92 -50.71 13.05 21.66 0.28 -50.43 16 23 Si 0.99 44.08 29.55 68.60 2.03 46.10 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.09 1.42 11.50 85.65 0.99 2.41 16 28 N -0.32 -5.85 12.33 -56.28 -0.69 -6.54 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.13 0.29 8.06 -2.39 -0.02 0.27 16 34 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.41 5.29 7.43 -92.71 -0.69 4.60 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.53 7.75 -2.39 -0.02 1.52 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 43 H 0.34 11.15 8.17 -89.69 -0.73 10.42 16 44 H 0.10 3.20 8.05 -2.39 -0.02 3.18 16 45 H 0.07 2.04 7.44 -2.39 -0.02 2.02 16 46 H 0.40 19.90 7.90 -92.71 -0.73 19.16 16 47 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 48 H 0.22 1.80 7.50 -2.91 -0.02 1.78 16 Total: -1.00 -83.38 408.36 -0.05 -83.43 By element: Atomic # 1 Polarization: 42.50 SS G_CDS: -1.16 Total: 41.34 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.72 Total: 23.93 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -8.52 Total: -136.86 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -0.12 Total: -57.95 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -83.38 -0.05 -83.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714459871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.208 kcal (2) G-P(sol) polarization free energy of solvation -83.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds