Wall clock time and date at job start Tue Mar 31 2020 20:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46904 * 109.47314 * 2 1 4 4 C 1.46900 * 110.99812 * 76.03018 * 3 2 1 5 5 C 1.52995 * 109.46899 * 199.54501 * 4 3 2 6 6 N 1.46506 * 109.47268 * 174.88481 * 5 4 3 7 7 C 1.34765 * 119.99939 * 179.97438 * 6 5 4 8 8 O 1.21609 * 120.00635 * 0.02562 * 7 6 5 9 9 C 1.47412 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31617 * 125.86433 * 0.32083 * 9 7 6 11 11 C 1.33101 * 109.09667 * 180.16732 * 10 9 7 12 12 C 1.35570 * 108.34874 * 359.55966 * 11 10 9 13 13 N 1.35405 * 107.15973 * 0.26045 * 12 11 10 14 14 C 1.46494 * 126.43691 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47421 * 265.02702 * 14 13 12 16 16 C 1.46897 * 110.99693 * 199.98253 * 3 2 1 17 17 C 1.50706 * 109.47216 * 66.04971 * 16 3 2 18 18 O 1.21291 * 119.99615 * 359.97438 * 17 16 3 19 19 N 1.34775 * 119.99674 * 180.02562 * 17 16 3 20 20 C 1.37096 * 119.99572 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00216 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99902 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99841 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99925 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47063 * 90.00085 * 24 22 20 26 26 H 1.48500 * 109.47231 * 210.00045 * 24 22 20 27 27 H 1.48494 * 109.47225 * 330.00350 * 24 22 20 28 28 H 1.09005 * 109.46499 * 294.87175 * 1 2 3 29 29 H 1.08997 * 109.46813 * 54.86810 * 1 2 3 30 30 H 1.08995 * 109.47631 * 174.87090 * 1 2 3 31 31 H 1.09006 * 109.46515 * 239.99952 * 2 1 3 32 32 H 1.08998 * 109.46936 * 120.00199 * 2 1 3 33 33 H 1.08992 * 109.47174 * 79.54577 * 4 3 2 34 34 H 1.08999 * 109.46857 * 319.54220 * 4 3 2 35 35 H 1.09003 * 109.47190 * 54.88907 * 5 4 3 36 36 H 1.08992 * 109.47379 * 294.88779 * 5 4 3 37 37 H 0.96996 * 119.99378 * 0.02562 * 6 5 4 38 38 H 1.07998 * 125.82549 * 179.81875 * 11 10 9 39 39 H 1.07994 * 126.41727 * 180.30575 * 12 11 10 40 40 H 1.08998 * 109.47672 * 25.03027 * 14 13 12 41 41 H 1.09008 * 109.47188 * 145.03089 * 14 13 12 42 42 H 1.08998 * 109.47240 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.46962 * 300.00759 * 15 14 13 44 44 H 1.09008 * 109.46623 * 60.00041 * 15 14 13 45 45 H 1.09003 * 109.46877 * 186.04378 * 16 3 2 46 46 H 1.08995 * 109.47508 * 306.04784 * 16 3 2 47 47 H 0.96993 * 120.00183 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99681 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.8831 1.9917 1.3309 5 6 1.9281 3.5157 1.2037 6 7 1.6701 4.1228 2.5118 7 6 1.6610 5.4641 2.6422 8 8 1.8665 6.1706 1.6739 9 6 1.4019 6.0749 3.9585 10 7 1.1723 5.4237 5.0790 11 6 0.9786 6.3013 6.0608 12 6 1.0988 7.5500 5.5470 13 7 1.3650 7.4146 4.2262 14 6 1.5734 8.5002 3.2649 15 6 0.2550 8.8117 2.5535 16 6 3.4104 1.4516 -0.4687 17 6 3.4712 1.0499 -1.9199 18 8 2.4560 0.7383 -2.5059 19 7 4.6538 1.0359 -2.5662 20 6 4.7092 0.6699 -3.8863 21 1 3.8052 0.3924 -4.4081 22 6 5.9284 0.6560 -4.5528 23 7 5.9815 0.3047 -5.8179 24 14 7.4917 1.1366 -3.6504 25 1 8.0977 -0.0703 -3.0328 26 1 8.4527 1.7369 -4.6102 27 1 7.1676 2.1251 -2.5907 28 1 -0.3632 0.4323 0.9324 29 1 -0.3633 0.5914 -0.8404 30 1 -0.3634 -1.0235 -0.0919 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.7006 1.6560 1.9688 34 1 0.9321 1.6917 1.7709 35 1 1.1680 3.8437 0.4946 36 1 2.9121 3.8218 0.8488 37 1 1.5065 3.5592 3.2841 38 1 0.7663 6.0597 7.0918 39 1 1.0014 8.4787 6.0895 40 1 1.9214 9.3893 3.7906 41 1 2.3196 8.1969 2.5304 42 1 0.4100 9.6197 1.8386 43 1 -0.0931 7.9225 2.0279 44 1 -0.4912 9.1150 3.2880 45 1 3.7828 2.4700 -0.3577 46 1 4.0259 0.7733 0.1222 47 1 5.4657 1.2847 -2.0974 48 1 6.8325 0.2954 -6.2833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714580518.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:05 Heat of formation + Delta-G solvation = 4.731977 kcal Electronic energy + Delta-G solvation = -28832.698787 eV Core-core repulsion = 24731.431519 eV Total energy + Delta-G solvation = -4101.267268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.63857 -39.61844 -38.85202 -37.02041 -35.64938 -34.66206 -33.85009 -31.70068 -31.24915 -30.71646 -30.19522 -28.99250 -26.44442 -24.64777 -24.08884 -23.44234 -22.30540 -21.60586 -21.04891 -20.07551 -19.32358 -18.29802 -18.13836 -16.71138 -16.41587 -16.15357 -15.96417 -15.59377 -15.10145 -14.91832 -14.76684 -14.69968 -14.31652 -14.15803 -14.07653 -13.82595 -13.64442 -13.30228 -13.16100 -13.03117 -12.55011 -12.47517 -12.42300 -11.99332 -11.81783 -11.76270 -11.60459 -11.45455 -11.22556 -10.86984 -10.63565 -10.59081 -10.54035 -10.40193 -10.18247 -9.95432 -9.50466 -9.33983 -8.87936 -8.53743 -8.15850 -8.02415 -6.28938 -3.80039 1.05081 2.06093 2.27767 2.94277 3.04975 3.08362 3.15050 3.16843 3.75981 3.89316 4.10714 4.12887 4.24207 4.41032 4.57301 4.67009 4.84438 4.86297 4.90274 5.00973 5.04539 5.22513 5.24384 5.31574 5.33329 5.38194 5.49815 5.68247 5.72912 5.74323 5.77870 5.81548 5.85423 5.89276 5.99438 6.06948 6.17080 6.23862 6.41813 6.53188 6.55809 7.10759 7.17008 7.28218 7.51009 7.60683 7.89405 8.16828 8.62540 8.97635 9.44950 9.85835 10.84199 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.002291 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.734792 B =12220.166992 C =13370.775035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 N -0.511 5.511 4 C 0.043 3.957 5 C 0.122 3.878 6 N -0.703 5.703 7 C 0.606 3.394 8 O -0.535 6.535 9 C 0.141 3.859 10 N -0.447 5.447 11 C -0.029 4.029 12 C -0.030 4.030 13 N -0.412 5.412 14 C 0.094 3.906 15 C -0.163 4.163 16 C 0.039 3.961 17 C 0.453 3.547 18 O -0.557 6.557 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.024 0.976 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 14.060 25.920 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 N -0.236 5.236 4 C -0.085 4.085 5 C -0.001 4.001 6 N -0.354 5.354 7 C 0.389 3.611 8 O -0.411 6.411 9 C -0.118 4.118 10 N -0.169 5.169 11 C -0.182 4.182 12 C -0.169 4.169 13 N -0.093 5.093 14 C -0.027 4.027 15 C -0.221 4.221 16 C -0.093 4.093 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.195 0.805 39 H 0.199 0.801 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.834 13.815 24.128 29.173 hybrid contribution 1.876 0.686 1.625 2.575 sum -6.958 14.501 25.753 30.363 Atomic orbital electron populations 1.21696 0.95098 1.01231 1.01682 1.22186 0.96197 0.87650 1.01466 1.61437 1.19638 1.19811 1.22739 1.22253 1.01952 0.93321 0.91014 1.21445 1.02891 0.92451 0.83321 1.45561 1.71238 1.05667 1.12979 1.16399 0.77442 0.82662 0.84574 1.90840 1.50070 1.61574 1.38586 1.22650 1.12421 0.80879 0.95869 1.70190 1.15445 1.33418 0.97870 1.22427 1.07999 0.88249 0.99521 1.22942 1.08225 1.01733 0.83978 1.45302 1.48234 1.07096 1.08629 1.22169 1.00795 0.87984 0.91798 1.22072 0.95805 1.03386 1.00839 1.21992 0.89440 1.02013 0.95849 1.19605 0.84223 0.84476 0.87846 1.90552 1.33656 1.51598 1.68009 1.42221 1.07188 1.61821 1.11932 1.19421 0.97261 1.42122 0.84354 0.86248 1.25034 0.97851 0.97662 0.95646 1.69621 1.26531 1.47173 1.08871 0.86685 0.83815 0.79112 0.79878 1.19697 1.20201 1.19456 0.93806 0.91333 0.92737 0.88423 0.95735 0.94043 0.89839 0.89680 0.90948 0.75389 0.80521 0.80067 0.88919 0.87064 0.90151 0.91205 0.92301 0.89173 0.93189 0.79761 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.96 37.16 0.37 -1.50 16 2 C 0.05 0.79 5.18 -3.82 -0.02 0.77 16 3 N -0.51 -7.85 4.10 -236.07 -0.97 -8.82 16 4 C 0.04 0.50 4.92 -3.83 -0.02 0.48 16 5 C 0.12 1.47 5.70 -4.04 -0.02 1.45 16 6 N -0.70 -7.68 5.55 -61.39 -0.34 -8.02 16 7 C 0.61 7.59 7.81 -12.53 -0.10 7.49 16 8 O -0.53 -7.86 14.51 5.27 0.08 -7.78 16 9 C 0.14 1.60 7.79 -154.51 -1.20 0.39 16 10 N -0.45 -4.87 10.89 -11.25 -0.12 -5.00 16 11 C -0.03 -0.23 11.85 -17.96 -0.21 -0.45 16 12 C -0.03 -0.21 11.53 -16.93 -0.20 -0.40 16 13 N -0.41 -3.71 2.76 -114.58 -0.32 -4.03 16 14 C 0.09 0.68 6.18 -4.04 -0.02 0.65 16 15 C -0.16 -1.14 10.23 37.16 0.38 -0.76 16 16 C 0.04 0.64 5.27 -4.97 -0.03 0.61 16 17 C 0.45 10.18 7.29 -10.98 -0.08 10.10 16 18 O -0.56 -14.60 14.12 5.55 0.08 -14.52 16 19 N -0.59 -14.10 5.09 -10.96 -0.06 -14.15 16 20 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 24 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 H 0.04 0.50 6.91 -51.93 -0.36 0.14 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.83 5.85 -51.93 -0.30 1.53 16 32 H 0.02 0.32 7.99 -51.93 -0.42 -0.09 16 33 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 34 H 0.08 0.86 6.58 -51.93 -0.34 0.52 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.94 6.95 -51.93 -0.36 0.58 16 37 H 0.41 3.82 8.15 -40.82 -0.33 3.49 16 38 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.09 0.40 8.13 -51.93 -0.42 -0.03 16 41 H 0.11 1.00 6.64 -51.92 -0.34 0.65 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 44 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 45 H 0.09 1.35 6.71 -51.93 -0.35 1.00 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -34.97 395.02 -8.26 -43.23 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.22 Total: 12.28 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -1.40 Total: 11.16 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -1.03 Total: -65.12 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.15 Total: -22.31 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.97 -8.26 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714580518.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.965 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds