Wall clock time and date at job start Tue Mar 31 2020 20:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46904 * 109.47314 * 2 1 4 4 C 1.46900 * 110.99812 * 76.03018 * 3 2 1 5 5 C 1.52995 * 109.46899 * 199.54501 * 4 3 2 6 6 N 1.46506 * 109.47268 * 174.88481 * 5 4 3 7 7 C 1.34765 * 119.99939 * 179.97438 * 6 5 4 8 8 O 1.21609 * 120.00635 * 0.02562 * 7 6 5 9 9 C 1.47412 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31617 * 125.86433 * 0.32083 * 9 7 6 11 11 C 1.33101 * 109.09667 * 180.16732 * 10 9 7 12 12 C 1.35570 * 108.34874 * 359.55966 * 11 10 9 13 13 N 1.35405 * 107.15973 * 0.26045 * 12 11 10 14 14 C 1.46494 * 126.43691 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47421 * 265.02702 * 14 13 12 16 16 C 1.46897 * 110.99693 * 199.98253 * 3 2 1 17 17 C 1.50706 * 109.47216 * 66.04971 * 16 3 2 18 18 O 1.21291 * 119.99615 * 359.97438 * 17 16 3 19 19 N 1.34775 * 119.99674 * 180.02562 * 17 16 3 20 20 C 1.37096 * 119.99572 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00216 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99902 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99841 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99925 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47063 * 90.00085 * 24 22 20 26 26 H 1.48500 * 109.47231 * 210.00045 * 24 22 20 27 27 H 1.48494 * 109.47225 * 330.00350 * 24 22 20 28 28 H 1.09005 * 109.46499 * 294.87175 * 1 2 3 29 29 H 1.08997 * 109.46813 * 54.86810 * 1 2 3 30 30 H 1.08995 * 109.47631 * 174.87090 * 1 2 3 31 31 H 1.09006 * 109.46515 * 239.99952 * 2 1 3 32 32 H 1.08998 * 109.46936 * 120.00199 * 2 1 3 33 33 H 1.08992 * 109.47174 * 79.54577 * 4 3 2 34 34 H 1.08999 * 109.46857 * 319.54220 * 4 3 2 35 35 H 1.09003 * 109.47190 * 54.88907 * 5 4 3 36 36 H 1.08992 * 109.47379 * 294.88779 * 5 4 3 37 37 H 0.96996 * 119.99378 * 0.02562 * 6 5 4 38 38 H 1.07998 * 125.82549 * 179.81875 * 11 10 9 39 39 H 1.07994 * 126.41727 * 180.30575 * 12 11 10 40 40 H 1.08998 * 109.47672 * 25.03027 * 14 13 12 41 41 H 1.09008 * 109.47188 * 145.03089 * 14 13 12 42 42 H 1.08998 * 109.47240 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.46962 * 300.00759 * 15 14 13 44 44 H 1.09008 * 109.46623 * 60.00041 * 15 14 13 45 45 H 1.09003 * 109.46877 * 186.04378 * 16 3 2 46 46 H 1.08995 * 109.47508 * 306.04784 * 16 3 2 47 47 H 0.96993 * 120.00183 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99681 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.8831 1.9917 1.3309 5 6 1.9281 3.5157 1.2037 6 7 1.6701 4.1228 2.5118 7 6 1.6610 5.4641 2.6422 8 8 1.8665 6.1706 1.6739 9 6 1.4019 6.0749 3.9585 10 7 1.1723 5.4237 5.0790 11 6 0.9786 6.3013 6.0608 12 6 1.0988 7.5500 5.5470 13 7 1.3650 7.4146 4.2262 14 6 1.5734 8.5002 3.2649 15 6 0.2550 8.8117 2.5535 16 6 3.4104 1.4516 -0.4687 17 6 3.4712 1.0499 -1.9199 18 8 2.4560 0.7383 -2.5059 19 7 4.6538 1.0359 -2.5662 20 6 4.7092 0.6699 -3.8863 21 1 3.8052 0.3924 -4.4081 22 6 5.9284 0.6560 -4.5528 23 7 5.9815 0.3047 -5.8179 24 14 7.4917 1.1366 -3.6504 25 1 8.0977 -0.0703 -3.0328 26 1 8.4527 1.7369 -4.6102 27 1 7.1676 2.1251 -2.5907 28 1 -0.3632 0.4323 0.9324 29 1 -0.3633 0.5914 -0.8404 30 1 -0.3634 -1.0235 -0.0919 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.7006 1.6560 1.9688 34 1 0.9321 1.6917 1.7709 35 1 1.1680 3.8437 0.4946 36 1 2.9121 3.8218 0.8488 37 1 1.5065 3.5592 3.2841 38 1 0.7663 6.0597 7.0918 39 1 1.0014 8.4787 6.0895 40 1 1.9214 9.3893 3.7906 41 1 2.3196 8.1969 2.5304 42 1 0.4100 9.6197 1.8386 43 1 -0.0931 7.9225 2.0279 44 1 -0.4912 9.1150 3.2880 45 1 3.7828 2.4700 -0.3577 46 1 4.0259 0.7733 0.1222 47 1 5.4657 1.2847 -2.0974 48 1 6.8325 0.2954 -6.2833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714580518.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:04 Heat of formation + Delta-G solvation = -22.887571 kcal Electronic energy + Delta-G solvation = -28833.896460 eV Core-core repulsion = 24731.431519 eV Total energy + Delta-G solvation = -4102.464941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28252 -40.72875 -40.31382 -38.40196 -36.41461 -35.93225 -35.44957 -33.75501 -32.26816 -31.54085 -30.99877 -29.98671 -27.87858 -25.95344 -25.17458 -24.31358 -23.19490 -22.24887 -22.22893 -21.24567 -20.91055 -20.17561 -18.86276 -17.91243 -17.40885 -17.21942 -16.98389 -16.85912 -16.43753 -16.17136 -15.83429 -15.57960 -15.52577 -15.27192 -15.02686 -14.75144 -14.63988 -14.55275 -14.41715 -14.31054 -13.97527 -13.60893 -13.58805 -13.05164 -13.02034 -12.85715 -12.69789 -12.57614 -12.41273 -12.34260 -12.03934 -11.98431 -11.76635 -11.45439 -11.39028 -11.19215 -10.84768 -10.34756 -10.27071 -10.21318 -9.50605 -9.24323 -8.40457 -6.00545 0.31805 1.30019 1.34667 1.38561 1.43612 1.62804 1.97624 2.14252 2.22960 2.35798 2.70343 3.15858 3.18409 3.35257 3.73477 3.82384 3.87891 4.02403 4.03937 4.09428 4.25268 4.33099 4.34254 4.41037 4.42621 4.48474 4.54832 4.59051 4.70773 4.72189 4.78129 4.79147 4.89603 5.02573 5.12121 5.20844 5.25037 5.28776 5.42036 5.54602 5.66908 5.90942 5.91808 6.04087 6.17296 6.30184 6.61007 6.82151 6.89975 7.04633 7.41451 7.98870 8.77243 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.002291 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.734792 B =12220.166992 C =13370.775035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 N -0.535 5.535 4 C 0.053 3.947 5 C 0.130 3.870 6 N -0.692 5.692 7 C 0.601 3.399 8 O -0.567 6.567 9 C 0.103 3.897 10 N -0.462 5.462 11 C -0.046 4.046 12 C -0.009 4.009 13 N -0.414 5.414 14 C 0.092 3.908 15 C -0.157 4.157 16 C 0.051 3.949 17 C 0.452 3.548 18 O -0.601 6.601 19 N -0.595 5.595 20 C -0.324 4.324 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.234 1.234 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.420 0.580 38 H 0.204 0.796 39 H 0.225 0.775 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.035 0.965 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.388 0.612 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 15.941 30.855 35.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 N -0.261 5.261 4 C -0.075 4.075 5 C 0.006 3.994 6 N -0.344 5.344 7 C 0.386 3.614 8 O -0.446 6.446 9 C -0.155 4.155 10 N -0.185 5.185 11 C -0.200 4.200 12 C -0.148 4.148 13 N -0.095 5.095 14 C -0.029 4.029 15 C -0.215 4.215 16 C -0.081 4.081 17 C 0.240 3.760 18 O -0.485 6.485 19 N -0.237 5.237 20 C -0.453 4.453 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.157 1.157 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.221 0.779 39 H 0.242 0.758 40 H 0.148 0.852 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.101 0.899 47 H 0.223 0.777 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.607 15.679 29.097 33.917 hybrid contribution 1.301 0.125 0.130 1.314 sum -6.306 15.804 29.227 33.819 Atomic orbital electron populations 1.21648 0.94094 1.01633 1.01763 1.22099 0.97073 0.87548 1.00628 1.61330 1.18985 1.20251 1.25502 1.22232 1.03870 0.92156 0.89209 1.21245 1.01584 0.93081 0.83460 1.45412 1.70806 1.05439 1.12779 1.16688 0.76854 0.82862 0.85005 1.90814 1.51669 1.62280 1.39809 1.22363 1.15545 0.82125 0.95420 1.70129 1.15442 1.34562 0.98329 1.23035 1.08131 0.88496 1.00298 1.23692 1.05100 1.03081 0.82929 1.45516 1.47635 1.06634 1.09683 1.22280 1.00212 0.88644 0.91747 1.22021 0.96093 1.02217 1.01191 1.21902 0.91130 1.03756 0.91265 1.20848 0.82973 0.82010 0.90196 1.90539 1.35300 1.52790 1.69852 1.42059 1.08603 1.62595 1.10416 1.18986 0.95746 1.44042 0.86557 0.92591 1.26092 1.02119 0.96794 0.96462 1.69805 1.28112 1.48455 1.11233 0.85389 0.77204 0.79974 0.79125 1.18010 1.20101 1.15725 0.91134 0.94292 0.91676 0.92792 0.92796 0.91458 0.88170 0.92089 0.91756 0.74297 0.77922 0.75818 0.85183 0.89363 0.88857 0.94593 0.90950 0.86985 0.89882 0.77657 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.96 71.98 0.72 -2.79 16 2 C 0.05 1.58 5.18 86.30 0.45 2.03 16 3 N -0.54 -15.74 4.10 -900.79 -3.70 -19.44 16 4 C 0.05 1.08 4.92 86.30 0.42 1.51 16 5 C 0.13 3.02 5.70 86.38 0.49 3.52 16 6 N -0.69 -14.54 5.55 -466.40 -2.59 -17.13 16 7 C 0.60 15.07 7.81 86.66 0.68 15.75 16 8 O -0.57 -17.22 14.51 -4.06 -0.06 -17.28 16 9 C 0.10 2.23 7.79 136.28 1.06 3.29 16 10 N -0.46 -9.29 10.89 -189.52 -2.06 -11.35 16 11 C -0.05 -0.62 11.85 83.88 0.99 0.37 16 12 C -0.01 -0.09 11.53 83.52 0.96 0.87 16 13 N -0.41 -6.66 2.76 -516.42 -1.42 -8.08 16 14 C 0.09 1.17 6.18 86.38 0.53 1.71 16 15 C -0.16 -2.04 10.23 71.98 0.74 -1.30 16 16 C 0.05 1.58 5.27 85.56 0.45 2.03 16 17 C 0.45 20.68 7.29 87.66 0.64 21.32 16 18 O -0.60 -33.34 14.12 -3.06 -0.04 -33.38 16 19 N -0.59 -28.56 5.09 -306.98 -1.56 -30.12 16 20 C -0.32 -19.24 10.16 84.04 0.85 -18.39 16 21 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 23 N -0.94 -57.18 13.96 21.66 0.30 -56.88 16 24 Si 0.96 39.63 27.74 68.60 1.90 41.53 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.23 -8.22 6.52 99.48 0.65 -7.57 16 28 H 0.07 1.45 6.91 -2.38 -0.02 1.43 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 2.07 5.85 -2.38 -0.01 2.06 16 32 H 0.05 1.26 7.99 -2.39 -0.02 1.24 16 33 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 34 H 0.10 1.74 6.58 -2.39 -0.02 1.72 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.60 6.95 -2.39 -0.02 1.58 16 37 H 0.42 7.15 8.15 -92.71 -0.76 6.39 16 38 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 40 H 0.13 0.65 8.13 -2.39 -0.02 0.63 16 41 H 0.09 1.57 6.64 -2.38 -0.02 1.56 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.03 0.71 7.86 -2.39 -0.02 0.69 16 44 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.11 3.06 6.71 -2.39 -0.02 3.05 16 46 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 47 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 48 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -85.07 395.02 -0.13 -85.20 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -0.35 Total: 37.46 kcal Atomic # 6 Polarization: 20.01 SS G_CDS: 9.46 Total: 29.46 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -11.03 Total: -143.00 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.10 Total: -50.66 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.53 kcal Total: -85.07 -0.13 -85.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714580518.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.315 kcal (2) G-P(sol) polarization free energy of solvation -85.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds