Wall clock time and date at job start Tue Mar 31 2020 20:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46505 * 109.46827 * 2 1 4 4 N 1.28449 * 125.18612 * 85.53102 * 3 2 1 5 5 C 1.30862 * 110.92567 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.06775 * 179.97438 * 5 4 3 7 7 C 1.39678 * 107.85927 * 0.02562 * 5 4 3 8 8 C 1.36597 * 125.19113 * 265.49026 * 3 2 1 9 9 C 1.47161 * 126.88672 * 359.97438 * 8 3 2 10 10 O 1.21625 * 120.00104 * 343.53891 * 9 8 3 11 11 N 1.34775 * 119.99945 * 163.53340 * 9 8 3 12 12 C 1.46502 * 120.00250 * 359.87706 * 11 9 8 13 13 C 1.46503 * 119.99688 * 179.87508 * 11 9 8 14 14 C 1.53007 * 109.46779 * 90.00216 * 13 11 9 15 15 N 1.46900 * 109.46816 * 179.97438 * 14 13 11 16 16 C 1.46895 * 111.00034 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47235 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99806 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00114 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00229 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99889 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00373 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99664 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00305 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47121 * 59.99846 * 24 22 20 26 26 H 1.48499 * 109.47203 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47202 * 300.00090 * 24 22 20 28 28 H 1.09002 * 109.47076 * 304.98111 * 1 2 3 29 29 H 1.08993 * 109.47321 * 64.98392 * 1 2 3 30 30 H 1.09000 * 109.46931 * 184.98696 * 1 2 3 31 31 H 1.09000 * 109.46606 * 240.00524 * 2 1 3 32 32 H 1.08992 * 109.47516 * 120.00542 * 2 1 3 33 33 H 1.09004 * 109.47127 * 90.02885 * 6 5 4 34 34 H 1.09004 * 109.47242 * 210.02299 * 6 5 4 35 35 H 1.08997 * 109.47365 * 330.02517 * 6 5 4 36 36 H 1.08000 * 127.31539 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.47024 * 83.28222 * 12 11 9 38 38 H 1.08996 * 109.47088 * 203.28728 * 12 11 9 39 39 H 1.09004 * 109.47028 * 323.28955 * 12 11 9 40 40 H 1.09003 * 109.46848 * 209.99809 * 13 11 9 41 41 H 1.08997 * 109.47300 * 330.00487 * 13 11 9 42 42 H 1.08997 * 109.47226 * 299.99858 * 14 13 11 43 43 H 1.08997 * 109.46983 * 60.00077 * 14 13 11 44 44 H 1.00903 * 110.99986 * 56.04689 * 15 14 13 45 45 H 1.08994 * 109.47139 * 300.00054 * 16 15 14 46 46 H 1.09001 * 109.47299 * 59.99774 * 16 15 14 47 47 H 0.96998 * 119.99685 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99887 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.1879 2.1064 1.0466 5 6 2.6348 3.2936 0.7253 6 6 2.9504 4.4123 1.6843 7 6 2.7663 3.3402 -0.6645 8 6 2.3635 2.0942 -1.1129 9 6 2.3168 1.6304 -2.5087 10 8 2.2350 0.4416 -2.7521 11 7 2.3647 2.5230 -3.5173 12 6 2.4604 3.9552 -3.2242 13 6 2.3210 2.0610 -4.9069 14 6 0.8663 1.9935 -5.3764 15 7 0.8226 1.5309 -6.7700 16 6 -0.5615 1.4541 -7.2560 17 6 -0.5663 0.9765 -8.6853 18 8 0.4804 0.7251 -9.2442 19 7 -1.7337 0.8285 -9.3425 20 6 -1.7381 0.3945 -10.6428 21 1 -0.8060 0.1707 -11.1406 22 6 -2.9415 0.2424 -11.3206 23 7 -4.0756 0.5152 -10.7151 24 14 -2.9475 -0.3496 -13.0921 25 1 -2.3214 -1.6941 -13.1668 26 1 -4.3467 -0.4266 -13.5836 27 1 -2.1790 0.6017 -13.9347 28 1 -0.3633 0.5892 0.8420 29 1 -0.3633 0.4345 -0.9312 30 1 -0.3633 -1.0238 0.0893 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8898 33 1 3.9925 4.3407 1.9960 34 1 2.7834 5.3706 1.1924 35 1 2.3036 4.3350 2.5583 36 1 3.1104 4.1713 -1.2622 37 1 3.5022 4.2203 -3.0438 38 1 2.0818 4.5257 -4.0723 39 1 1.8684 4.1851 -2.3383 40 1 2.8747 2.7559 -5.5384 41 1 2.7710 1.0706 -4.9749 42 1 0.3126 1.2987 -4.7450 43 1 0.4163 2.9839 -5.3085 44 1 1.2914 0.6431 -6.8711 45 1 -1.1254 0.7555 -6.6379 46 1 -1.0213 2.4409 -7.2007 47 1 -2.5707 1.0299 -8.8955 48 1 -4.9157 0.4088 -11.1880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714760879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:30 Heat of formation + Delta-G solvation = 21.083652 kcal Electronic energy + Delta-G solvation = -28591.781837 eV Core-core repulsion = 24491.223631 eV Total energy + Delta-G solvation = -4100.558206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94228 -39.94397 -38.28446 -36.64289 -35.42445 -34.82403 -33.83339 -31.86008 -31.60450 -31.20606 -29.44588 -27.87986 -27.34017 -26.18920 -24.32607 -23.64086 -22.83871 -22.06216 -21.07152 -19.31450 -19.10965 -17.89401 -17.49451 -17.04404 -16.54437 -16.16578 -16.06676 -15.55035 -15.26959 -15.05564 -14.61626 -14.43941 -14.24570 -13.99399 -13.75698 -13.64044 -13.45026 -13.30874 -13.26847 -13.14628 -12.76005 -12.66823 -12.43171 -12.31779 -12.13214 -12.00590 -11.67521 -11.54381 -11.50120 -11.16553 -10.98697 -10.84569 -10.43974 -10.29376 -10.21021 -9.49818 -9.41933 -9.22205 -9.03960 -8.46982 -8.10072 -7.95990 -6.41339 -3.82249 0.95278 1.96464 2.22558 2.68286 2.83894 3.20572 3.26140 3.30712 3.90814 3.95755 4.10966 4.13417 4.40146 4.56116 4.60765 4.71402 4.76321 4.89109 4.93053 4.95438 4.99870 5.16036 5.16847 5.21754 5.26721 5.27559 5.28862 5.31313 5.36955 5.44823 5.49571 5.64155 5.69650 5.71889 5.82260 5.83680 5.97244 6.10019 6.19547 6.27166 6.44664 6.91329 7.14703 7.55347 7.60387 7.68621 7.81302 8.06198 8.61425 9.17924 9.54320 10.05771 10.76324 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.001807 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.477055 B =15491.145575 C =15997.483986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.253 5.253 4 N -0.276 5.276 5 C 0.018 3.982 6 C -0.066 4.066 7 C -0.199 4.199 8 C -0.032 4.032 9 C 0.588 3.412 10 O -0.536 6.536 11 N -0.596 5.596 12 C 0.061 3.939 13 C 0.119 3.881 14 C 0.046 3.954 15 N -0.666 5.666 16 C 0.053 3.947 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.932 3.068 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.173 0.827 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.825 8.056 25.648 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.040 5.040 4 N -0.110 5.110 5 C -0.138 4.138 6 C -0.125 4.125 7 C -0.228 4.228 8 C -0.161 4.161 9 C 0.375 3.625 10 O -0.413 6.413 11 N -0.328 5.328 12 C -0.082 4.082 13 C -0.004 4.004 14 C -0.085 4.085 15 N -0.299 5.299 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.190 0.810 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.171 0.829 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.024 7.042 25.682 28.821 hybrid contribution -0.836 -0.404 -0.804 1.229 sum 10.187 6.637 24.878 27.690 Atomic orbital electron populations 1.22107 0.93390 1.03705 1.03103 1.22318 0.96222 0.76468 1.06394 1.45790 1.44234 1.12279 1.01726 1.73116 1.19370 1.04757 1.13760 1.22069 1.03905 0.93854 0.93981 1.20081 1.02070 0.93402 0.96904 1.22709 1.07897 0.97181 0.95006 1.21326 1.10956 0.94002 0.89802 1.16982 0.76805 0.85565 0.83105 1.90784 1.50429 1.15707 1.84410 1.47456 1.72215 1.07083 1.06076 1.22474 1.02106 0.80102 1.03514 1.21521 0.97338 1.02413 0.79088 1.22258 0.96192 1.00719 0.89332 1.60010 1.15732 1.36679 1.17482 1.21653 0.89585 1.01322 0.95448 1.19783 0.84847 0.84902 0.87845 1.90521 1.31532 1.55627 1.69028 1.41851 1.06780 1.58520 1.12837 1.19663 0.94569 1.40934 0.87789 0.87938 1.25269 0.94679 0.97621 1.00398 1.69610 0.97741 1.48908 1.38088 0.85903 0.77028 0.79387 0.81811 1.19912 1.20988 1.19874 0.91687 0.91845 0.89858 0.85917 0.88358 0.90863 0.90489 0.91044 0.81004 0.91688 0.90045 0.89654 0.88737 0.89385 0.95133 0.90988 0.82929 0.93841 0.89597 0.77457 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.11 0.97 6.80 -4.04 -0.03 0.94 16 3 N -0.25 -2.78 3.35 -57.14 -0.19 -2.97 16 4 N -0.28 -3.07 11.90 33.64 0.40 -2.67 16 5 C 0.02 0.17 7.22 -82.47 -0.60 -0.43 16 6 C -0.07 -0.37 10.45 36.00 0.38 0.01 16 7 C -0.20 -1.70 8.70 -38.98 -0.34 -2.04 16 8 C -0.03 -0.35 6.68 -82.06 -0.55 -0.90 16 9 C 0.59 6.99 7.62 -12.64 -0.10 6.89 16 10 O -0.54 -7.79 14.27 5.26 0.08 -7.72 16 11 N -0.60 -5.83 2.87 -182.94 -0.53 -6.35 16 12 C 0.06 0.37 8.75 59.85 0.52 0.89 16 13 C 0.12 1.30 5.64 -4.04 -0.02 1.28 16 14 C 0.05 0.58 6.01 -3.82 -0.02 0.56 16 15 N -0.67 -10.84 6.13 -115.06 -0.70 -11.54 16 16 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 17 C 0.44 10.53 7.82 -10.98 -0.09 10.45 16 18 O -0.58 -15.95 15.78 5.55 0.09 -15.86 16 19 N -0.56 -14.43 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.12 1.26 5.91 -51.93 -0.31 0.95 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.17 0.94 4.95 -52.49 -0.26 0.68 16 37 H 0.06 0.30 7.35 -51.93 -0.38 -0.09 16 38 H 0.08 0.43 8.02 -51.93 -0.42 0.01 16 39 H 0.09 0.48 5.36 -51.93 -0.28 0.20 16 40 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.35 5.99 8.43 -39.29 -0.33 5.66 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -34.71 399.21 -7.19 -41.90 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -7.26 Total: 11.98 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.73 Total: 9.50 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.36 Total: -61.96 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.16 Total: -23.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.71 -7.19 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714760879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.984 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds