Wall clock time and date at job start Tue Mar 31 2020 20:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47226 * 2 1 4 4 N 1.28448 * 125.19099 * 274.51376 * 3 2 1 5 5 C 1.30864 * 110.92583 * 180.15720 * 4 3 2 6 6 C 1.39673 * 107.86263 * 359.61405 * 5 4 3 7 7 C 1.36598 * 125.19227 * 94.23860 * 3 2 1 8 8 C 1.47167 * 126.87983 * 0.04358 * 7 3 2 9 9 O 1.21630 * 120.00285 * 354.36446 * 8 7 3 10 10 N 1.34783 * 119.99653 * 174.36781 * 8 7 3 11 11 C 1.46501 * 119.99573 * 185.10576 * 10 8 7 12 12 C 1.53002 * 109.46762 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47015 * 55.00424 * 12 11 10 14 14 C 1.52997 * 109.47354 * 295.00086 * 12 11 10 15 15 C 1.53003 * 109.47116 * 175.00272 * 12 11 10 16 16 N 1.46894 * 109.47354 * 185.00151 * 15 12 11 17 17 C 1.46903 * 111.00202 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47330 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99814 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00089 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99905 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99768 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99808 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99745 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00069 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46853 * 90.00330 * 25 23 21 27 27 H 1.48499 * 109.47033 * 209.99895 * 25 23 21 28 28 H 1.48501 * 109.47290 * 330.00335 * 25 23 21 29 29 H 1.09007 * 109.47481 * 60.00237 * 1 2 3 30 30 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47309 * 299.99859 * 1 2 3 32 32 H 1.08998 * 109.47309 * 240.00141 * 2 1 3 33 33 H 1.08996 * 109.47033 * 119.99982 * 2 1 3 34 34 H 1.07999 * 126.06872 * 179.87318 * 5 4 3 35 35 H 1.08004 * 127.32070 * 180.24941 * 6 5 4 36 36 H 0.96998 * 119.99843 * 5.10693 * 10 8 7 37 37 H 1.09000 * 109.47559 * 299.99959 * 11 10 8 38 38 H 1.08999 * 109.46846 * 60.00419 * 11 10 8 39 39 H 1.08997 * 109.47336 * 300.00142 * 14 12 11 40 40 H 1.09000 * 109.46925 * 60.00181 * 14 12 11 41 41 H 1.08996 * 109.47474 * 180.02562 * 14 12 11 42 42 H 1.09009 * 109.47108 * 305.00356 * 15 12 11 43 43 H 1.09003 * 109.46986 * 64.99642 * 15 12 11 44 44 H 1.00901 * 110.99749 * 56.04720 * 16 15 12 45 45 H 1.09002 * 109.47083 * 300.00299 * 17 16 15 46 46 H 1.09002 * 109.46844 * 60.00218 * 17 16 15 47 47 H 0.96993 * 120.00175 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00154 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1872 2.1066 -1.0465 5 6 2.6371 3.2928 -0.7253 6 6 2.7635 3.3411 0.6649 7 6 2.3585 2.0959 1.1133 8 6 2.3059 1.6340 2.5096 9 8 1.8324 0.5450 2.7725 10 7 2.7824 2.4179 3.4970 11 6 2.8332 1.9145 4.8719 12 6 3.4115 2.9939 5.7892 13 1 2.8307 3.9101 5.6830 14 6 4.8670 3.2650 5.4033 15 6 3.3494 2.5160 7.2413 16 7 3.7927 3.5969 8.1319 17 6 3.7456 3.1734 9.5378 18 6 4.2068 4.3053 10.4192 19 8 4.5413 5.3613 9.9248 20 7 4.2476 4.1444 11.7566 21 6 4.6677 5.1742 12.5585 22 1 4.9655 6.1143 12.1183 23 6 4.7102 5.0081 13.9373 24 7 5.1124 5.9952 14.7059 25 14 4.1943 3.3821 14.6986 26 1 5.3754 2.4881 14.8039 27 1 3.6350 3.6249 16.0526 28 1 3.1626 2.7408 13.8444 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.8656 4.0938 -1.4127 35 1 3.1045 4.1733 1.2629 36 1 3.0917 3.3153 3.2973 37 1 1.8268 1.6574 5.2022 38 1 3.4660 1.0278 4.9109 39 1 5.4477 2.3488 5.5095 40 1 4.9112 3.6054 4.3688 41 1 5.2791 4.0336 6.0571 42 1 2.3248 2.2383 7.4890 43 1 4.0008 1.6512 7.3674 44 1 3.2448 4.4318 7.9876 45 1 2.7236 2.9005 9.8010 46 1 4.3995 2.3130 9.6801 47 1 3.9797 3.3002 12.1520 48 1 5.1417 5.8795 15.6685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715225267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:47 Heat of formation + Delta-G solvation = 3.916117 kcal Electronic energy + Delta-G solvation = -27891.047798 eV Core-core repulsion = 23789.745153 eV Total energy + Delta-G solvation = -4101.302646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.94076 -39.88484 -38.57266 -37.35390 -35.35436 -34.70915 -33.93955 -32.70058 -31.66955 -31.09806 -30.18868 -27.62094 -26.99273 -25.07917 -24.41976 -23.48222 -22.77909 -21.63160 -20.94371 -20.12523 -19.37178 -18.52702 -18.19338 -16.73994 -16.57680 -16.14547 -15.93816 -15.78009 -15.39634 -15.11009 -15.00850 -14.83252 -14.46129 -14.28488 -14.20758 -13.71507 -13.40612 -13.36414 -13.21776 -12.99339 -12.73802 -12.63057 -12.52056 -12.11773 -12.06790 -11.83332 -11.75982 -11.28818 -11.22760 -11.17181 -11.11821 -10.98495 -10.61097 -10.45335 -9.99232 -9.72887 -9.58942 -9.49567 -9.38018 -8.61947 -8.21710 -8.16676 -6.32710 -3.84268 0.83957 1.93553 2.21534 2.75363 2.81236 3.01053 3.05724 3.13952 3.72092 4.01460 4.07791 4.09071 4.14816 4.51823 4.57879 4.59491 4.63737 4.74028 4.77200 4.81900 4.94986 5.12451 5.16715 5.20090 5.21556 5.28734 5.33731 5.38329 5.46414 5.57148 5.58244 5.61542 5.72756 5.78220 5.80595 5.89070 5.92264 6.05667 6.09928 6.31472 6.32376 6.96689 7.03412 7.51978 7.56609 7.60930 7.71581 8.12778 8.57984 8.93263 9.40775 9.80779 10.80366 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.001548 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.444623 B =18080.871173 C =18749.672427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.253 5.253 4 N -0.277 5.277 5 C -0.003 4.003 6 C -0.189 4.189 7 C -0.039 4.039 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.709 5.709 11 C 0.126 3.874 12 C -0.101 4.101 13 H 0.079 0.921 14 C -0.142 4.142 15 C 0.066 3.934 16 N -0.666 5.666 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.187 0.813 35 H 0.161 0.839 36 H 0.405 0.595 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.350 0.650 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.695 -12.426 -28.411 31.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.042 5.042 4 N -0.110 5.110 5 C -0.179 4.179 6 C -0.218 4.218 7 C -0.168 4.168 8 C 0.376 3.624 9 O -0.418 6.418 10 N -0.361 5.361 11 C 0.002 3.998 12 C -0.120 4.120 13 H 0.097 0.903 14 C -0.199 4.199 15 C -0.064 4.064 16 N -0.298 5.298 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.204 0.796 35 H 0.179 0.821 36 H 0.241 0.759 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.170 0.830 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.436 -13.380 -29.287 33.046 hybrid contribution -0.952 -0.246 1.569 1.852 sum -8.388 -13.625 -27.718 32.004 Atomic orbital electron populations 1.22073 0.93321 1.03602 1.03103 1.22222 0.96383 0.76437 1.05854 1.45887 1.44078 1.12346 1.01858 1.73221 1.18650 1.05214 1.13890 1.23600 1.03994 0.95241 0.95054 1.22291 1.06941 0.96750 0.95807 1.21406 1.11162 0.94372 0.89866 1.16901 0.78013 0.84386 0.83102 1.90791 1.45524 1.21547 1.83915 1.45668 1.64453 1.18196 1.07811 1.21475 1.01748 0.97213 0.79317 1.21353 0.98325 0.98132 0.94162 0.90276 1.21776 0.94619 1.02956 1.00549 1.21894 0.98418 0.95088 0.91007 1.60031 1.60451 1.06210 1.03111 1.21702 0.99929 0.98134 0.88709 1.19704 0.84783 0.89444 0.82538 1.90563 1.52030 1.28448 1.73652 1.42208 1.60317 1.14723 1.05740 1.19434 1.40834 0.95211 0.87974 0.86278 1.25039 0.97546 0.97635 0.95915 1.69621 1.46190 1.31178 1.05099 0.86669 0.79168 0.83661 0.79856 1.19590 1.20187 1.19541 0.91812 0.90010 0.91613 0.88465 0.86453 0.79582 0.82123 0.75892 0.91017 0.90865 0.92726 0.93580 0.90247 0.95178 0.90649 0.83025 0.93743 0.89443 0.79687 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.11 0.82 6.58 -4.04 -0.03 0.79 16 3 N -0.25 -2.38 3.35 -57.14 -0.19 -2.57 16 4 N -0.28 -2.68 11.90 30.59 0.36 -2.31 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.36 10.50 -38.99 -0.41 -1.77 16 7 C -0.04 -0.36 6.96 -82.06 -0.57 -0.93 16 8 C 0.59 5.70 7.78 -12.63 -0.10 5.60 16 9 O -0.54 -6.51 14.68 5.25 0.08 -6.43 16 10 N -0.71 -5.31 5.27 -61.46 -0.32 -5.63 16 11 C 0.13 0.99 5.07 -4.04 -0.02 0.97 16 12 C -0.10 -0.82 2.57 -90.62 -0.23 -1.05 16 13 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 14 C -0.14 -1.24 8.95 37.16 0.33 -0.91 16 15 C 0.07 0.66 5.07 -3.83 -0.02 0.64 16 16 N -0.67 -9.30 5.58 -115.05 -0.64 -9.94 16 17 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 18 C 0.45 9.93 7.82 -10.99 -0.09 9.85 16 19 O -0.57 -14.80 15.78 5.55 0.09 -14.71 16 20 N -0.59 -13.84 5.09 -10.97 -0.06 -13.89 16 21 C -0.31 -8.57 10.16 -14.93 -0.15 -8.73 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 25 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.12 0.94 6.20 -51.93 -0.32 0.62 16 34 H 0.19 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.16 0.69 7.59 -52.48 -0.40 0.29 16 36 H 0.41 2.23 6.69 -40.82 -0.27 1.96 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.32 7.18 -51.93 -0.37 -0.05 16 41 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 42 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.35 5.09 8.43 -39.29 -0.33 4.76 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -34.98 400.54 -7.21 -42.20 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -7.39 Total: 12.28 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.24 Total: 5.30 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.07 Total: -59.13 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.16 Total: -21.14 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.98 -7.21 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715225267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.115 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds