Wall clock time and date at job start Tue Mar 31 2020 20:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47226 * 2 1 4 4 N 1.28448 * 125.19099 * 274.51376 * 3 2 1 5 5 C 1.30864 * 110.92583 * 180.15720 * 4 3 2 6 6 C 1.39673 * 107.86263 * 359.61405 * 5 4 3 7 7 C 1.36598 * 125.19227 * 94.23860 * 3 2 1 8 8 C 1.47167 * 126.87983 * 0.04358 * 7 3 2 9 9 O 1.21630 * 120.00285 * 354.36446 * 8 7 3 10 10 N 1.34783 * 119.99653 * 174.36781 * 8 7 3 11 11 C 1.46501 * 119.99573 * 185.10576 * 10 8 7 12 12 C 1.53002 * 109.46762 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47015 * 55.00424 * 12 11 10 14 14 C 1.52997 * 109.47354 * 295.00086 * 12 11 10 15 15 C 1.53003 * 109.47116 * 175.00272 * 12 11 10 16 16 N 1.46894 * 109.47354 * 185.00151 * 15 12 11 17 17 C 1.46903 * 111.00202 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47330 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99814 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00089 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99905 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99768 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99808 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99745 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00069 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46853 * 90.00330 * 25 23 21 27 27 H 1.48499 * 109.47033 * 209.99895 * 25 23 21 28 28 H 1.48501 * 109.47290 * 330.00335 * 25 23 21 29 29 H 1.09007 * 109.47481 * 60.00237 * 1 2 3 30 30 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47309 * 299.99859 * 1 2 3 32 32 H 1.08998 * 109.47309 * 240.00141 * 2 1 3 33 33 H 1.08996 * 109.47033 * 119.99982 * 2 1 3 34 34 H 1.07999 * 126.06872 * 179.87318 * 5 4 3 35 35 H 1.08004 * 127.32070 * 180.24941 * 6 5 4 36 36 H 0.96998 * 119.99843 * 5.10693 * 10 8 7 37 37 H 1.09000 * 109.47559 * 299.99959 * 11 10 8 38 38 H 1.08999 * 109.46846 * 60.00419 * 11 10 8 39 39 H 1.08997 * 109.47336 * 300.00142 * 14 12 11 40 40 H 1.09000 * 109.46925 * 60.00181 * 14 12 11 41 41 H 1.08996 * 109.47474 * 180.02562 * 14 12 11 42 42 H 1.09009 * 109.47108 * 305.00356 * 15 12 11 43 43 H 1.09003 * 109.46986 * 64.99642 * 15 12 11 44 44 H 1.00901 * 110.99749 * 56.04720 * 16 15 12 45 45 H 1.09002 * 109.47083 * 300.00299 * 17 16 15 46 46 H 1.09002 * 109.46844 * 60.00218 * 17 16 15 47 47 H 0.96993 * 120.00175 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00154 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1872 2.1066 -1.0465 5 6 2.6371 3.2928 -0.7253 6 6 2.7635 3.3411 0.6649 7 6 2.3585 2.0959 1.1133 8 6 2.3059 1.6340 2.5096 9 8 1.8324 0.5450 2.7725 10 7 2.7824 2.4179 3.4970 11 6 2.8332 1.9145 4.8719 12 6 3.4115 2.9939 5.7892 13 1 2.8307 3.9101 5.6830 14 6 4.8670 3.2650 5.4033 15 6 3.3494 2.5160 7.2413 16 7 3.7927 3.5969 8.1319 17 6 3.7456 3.1734 9.5378 18 6 4.2068 4.3053 10.4192 19 8 4.5413 5.3613 9.9248 20 7 4.2476 4.1444 11.7566 21 6 4.6677 5.1742 12.5585 22 1 4.9655 6.1143 12.1183 23 6 4.7102 5.0081 13.9373 24 7 5.1124 5.9952 14.7059 25 14 4.1943 3.3821 14.6986 26 1 5.3754 2.4881 14.8039 27 1 3.6350 3.6249 16.0526 28 1 3.1626 2.7408 13.8444 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.8656 4.0938 -1.4127 35 1 3.1045 4.1733 1.2629 36 1 3.0917 3.3153 3.2973 37 1 1.8268 1.6574 5.2022 38 1 3.4660 1.0278 4.9109 39 1 5.4477 2.3488 5.5095 40 1 4.9112 3.6054 4.3688 41 1 5.2791 4.0336 6.0571 42 1 2.3248 2.2383 7.4890 43 1 4.0008 1.6512 7.3674 44 1 3.2448 4.4318 7.9876 45 1 2.7236 2.9005 9.8010 46 1 4.3995 2.3130 9.6801 47 1 3.9797 3.3002 12.1520 48 1 5.1417 5.8795 15.6685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715225267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:46 Heat of formation + Delta-G solvation = -24.098058 kcal Electronic energy + Delta-G solvation = -27892.262584 eV Core-core repulsion = 23789.745153 eV Total energy + Delta-G solvation = -4102.517432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53791 -40.61200 -40.26605 -38.27033 -36.29762 -35.83907 -35.32129 -33.78201 -33.50547 -31.76679 -30.74552 -28.94474 -27.69432 -26.50083 -25.15310 -24.51645 -23.58022 -22.25973 -21.67871 -21.26397 -20.77688 -20.17904 -19.01528 -17.80602 -17.35358 -17.16213 -17.00810 -16.69004 -16.60827 -16.22073 -15.82360 -15.69400 -15.44915 -15.38148 -14.92961 -14.82624 -14.73646 -14.42292 -14.35702 -13.97858 -13.81460 -13.52678 -13.43200 -13.21183 -13.03837 -12.99074 -12.85759 -12.40234 -12.32017 -11.99782 -11.98865 -11.91881 -11.83606 -11.68474 -11.49963 -11.19095 -10.41665 -10.41109 -10.23411 -10.08887 -9.98776 -9.26657 -8.40325 -6.01150 0.20042 1.31082 1.35876 1.36685 1.45339 1.64041 1.97789 2.11072 2.15593 2.23914 2.77394 3.16288 3.43510 3.53044 3.56106 3.88875 3.98970 3.99131 4.07419 4.08536 4.18359 4.20768 4.28845 4.46467 4.52762 4.57091 4.58676 4.66199 4.67440 4.77276 4.82242 4.86336 4.87833 4.99645 5.07745 5.12057 5.23214 5.39644 5.53823 5.55375 5.57341 5.73973 5.92162 6.07185 6.34967 6.43901 6.61110 6.89491 6.98553 7.08947 7.41498 7.98166 8.77274 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.001548 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.444623 B =18080.871173 C =18749.672427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 N -0.265 5.265 4 N -0.302 5.302 5 C -0.008 4.008 6 C -0.179 4.179 7 C -0.061 4.061 8 C 0.590 3.410 9 O -0.570 6.570 10 N -0.698 5.698 11 C 0.134 3.866 12 C -0.089 4.089 13 H 0.084 0.916 14 C -0.138 4.138 15 C 0.067 3.933 16 N -0.682 5.682 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.215 0.785 35 H 0.190 0.810 36 H 0.416 0.584 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.345 0.655 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.771 -14.988 -29.234 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.053 5.053 4 N -0.134 5.134 5 C -0.184 4.184 6 C -0.208 4.208 7 C -0.190 4.190 8 C 0.376 3.624 9 O -0.450 6.450 10 N -0.350 5.350 11 C 0.010 3.990 12 C -0.108 4.108 13 H 0.102 0.898 14 C -0.196 4.196 15 C -0.062 4.062 16 N -0.314 5.314 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.231 0.769 35 H 0.207 0.793 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.163 0.837 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.512 -15.945 -30.139 35.143 hybrid contribution -0.558 0.695 1.708 1.927 sum -9.071 -15.249 -28.430 33.513 Atomic orbital electron populations 1.22010 0.92834 1.04511 1.01906 1.22308 0.96780 0.76131 1.06046 1.46069 1.44513 1.12836 1.01909 1.73198 1.19579 1.06215 1.14445 1.24180 1.03036 0.95239 0.95896 1.22700 1.05506 0.96680 0.95945 1.21566 1.12374 0.95344 0.89669 1.17027 0.77698 0.84112 0.83608 1.90773 1.47004 1.22839 1.84360 1.45566 1.63650 1.18445 1.07333 1.21357 1.01520 0.96876 0.79250 1.21220 0.97977 0.98362 0.93242 0.89771 1.21725 0.94794 1.02000 1.01059 1.21971 0.99307 0.93975 0.90966 1.60027 1.61333 1.07293 1.02757 1.21622 1.01831 0.95407 0.88185 1.21031 0.82373 0.90424 0.82542 1.90542 1.53495 1.31175 1.74567 1.42044 1.60923 1.14383 1.06040 1.19017 1.42837 0.94744 0.89250 0.92646 1.26110 0.96709 1.02780 0.95760 1.69806 1.47505 1.34462 1.05758 0.85367 0.80012 0.77364 0.78782 1.18228 1.20126 1.15391 0.92075 0.88094 0.93501 0.87095 0.87350 0.76872 0.79265 0.74625 0.91190 0.91076 0.92889 0.91802 0.92886 0.93656 0.89928 0.83670 0.90609 0.86882 0.77491 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.24 71.98 0.74 -1.25 16 2 C 0.11 1.56 6.58 86.38 0.57 2.13 16 3 N -0.26 -4.82 3.35 -334.70 -1.12 -5.94 16 4 N -0.30 -5.54 11.90 -57.14 -0.68 -6.22 16 5 C -0.01 -0.11 12.03 85.18 1.02 0.91 16 6 C -0.18 -2.21 10.50 22.66 0.24 -1.97 16 7 C -0.06 -1.05 6.96 40.79 0.28 -0.77 16 8 C 0.59 10.75 7.78 86.59 0.67 11.42 16 9 O -0.57 -13.48 14.68 -4.13 -0.06 -13.54 16 10 N -0.70 -9.08 5.27 -466.61 -2.46 -11.54 16 11 C 0.13 1.81 5.07 86.38 0.44 2.25 16 12 C -0.09 -1.25 2.57 -10.79 -0.03 -1.27 16 13 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 14 C -0.14 -2.18 8.95 71.98 0.64 -1.54 16 15 C 0.07 1.15 5.07 86.31 0.44 1.59 16 16 N -0.68 -17.69 5.58 -517.92 -2.89 -20.58 16 17 C 0.06 1.76 6.17 85.56 0.53 2.28 16 18 C 0.45 19.61 7.82 87.66 0.69 20.29 16 19 O -0.61 -33.14 15.78 -3.07 -0.05 -33.19 16 20 N -0.59 -27.39 5.09 -306.99 -1.56 -28.95 16 21 C -0.33 -19.13 10.16 84.04 0.85 -18.27 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.93 -56.07 13.96 21.66 0.30 -55.77 16 25 Si 0.96 38.32 27.74 68.60 1.90 40.23 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 29 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.77 6.20 -2.39 -0.01 1.76 16 34 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.19 1.01 7.59 -2.91 -0.02 0.99 16 36 H 0.42 3.53 6.69 -92.71 -0.62 2.91 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.76 7.18 -2.39 -0.02 0.74 16 41 H 0.05 1.15 7.75 -2.39 -0.02 1.13 16 42 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.34 9.61 8.43 -89.69 -0.76 8.85 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 48 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -82.01 400.54 -0.03 -82.05 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.97 Total: 38.02 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.55 Total: 15.44 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -8.41 Total: -129.00 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.11 Total: -46.73 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.23 kcal Total: -82.01 -0.03 -82.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715225267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.949 kcal (2) G-P(sol) polarization free energy of solvation -82.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds