Wall clock time and date at job start Tue Mar 31 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47466 * 2 1 4 4 N 1.28439 * 125.19364 * 270.91795 * 3 2 1 5 5 C 1.30865 * 110.93065 * 179.97438 * 4 3 2 6 6 C 1.39669 * 107.85752 * 359.77176 * 5 4 3 7 7 C 1.36603 * 125.18782 * 90.89048 * 3 2 1 8 8 C 1.47163 * 126.88676 * 359.97438 * 7 3 2 9 9 O 1.21632 * 119.99594 * 5.34179 * 8 7 3 10 10 N 1.34770 * 120.00321 * 185.34583 * 8 7 3 11 11 C 1.46494 * 120.00554 * 174.50460 * 10 8 7 12 12 C 1.53003 * 109.47750 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.46797 * 305.00234 * 12 11 10 14 14 C 1.52998 * 109.46823 * 64.99891 * 12 11 10 15 15 C 1.52996 * 109.47032 * 184.99908 * 12 11 10 16 16 N 1.46906 * 109.46515 * 174.99724 * 15 12 11 17 17 C 1.46906 * 110.99831 * 179.97438 * 16 15 12 18 18 C 1.50692 * 109.47273 * 180.02562 * 17 16 15 19 19 O 1.21293 * 119.99902 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00041 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99795 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00271 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99610 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00494 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99857 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47385 * 59.99886 * 25 23 21 27 27 H 1.48499 * 109.47495 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47238 * 299.99986 * 25 23 21 29 29 H 1.09000 * 109.46709 * 60.00039 * 1 2 3 30 30 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46766 * 299.99827 * 1 2 3 32 32 H 1.09003 * 109.47183 * 240.00031 * 2 1 3 33 33 H 1.09004 * 109.47155 * 120.00155 * 2 1 3 34 34 H 1.07998 * 126.06706 * 180.02562 * 5 4 3 35 35 H 1.08003 * 127.31563 * 180.23033 * 6 5 4 36 36 H 0.97012 * 119.99645 * 354.49658 * 10 8 7 37 37 H 1.09005 * 109.47048 * 59.99688 * 11 10 8 38 38 H 1.08998 * 109.47008 * 299.99989 * 11 10 8 39 39 H 1.08997 * 109.47411 * 60.00097 * 14 12 11 40 40 H 1.09003 * 109.46638 * 180.02562 * 14 12 11 41 41 H 1.09007 * 109.47189 * 300.00090 * 14 12 11 42 42 H 1.08997 * 109.47523 * 55.00416 * 15 12 11 43 43 H 1.08992 * 109.47151 * 294.99560 * 15 12 11 44 44 H 1.00906 * 110.99678 * 56.05144 * 16 15 12 45 45 H 1.08996 * 109.47547 * 300.00637 * 17 16 15 46 46 H 1.09001 * 109.46676 * 60.00430 * 17 16 15 47 47 H 0.96992 * 120.00032 * 0.02562 * 20 18 17 48 48 H 0.96994 * 120.00688 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2494 2.0846 -1.0495 5 6 2.6766 3.2788 -0.7271 6 6 2.7214 3.3559 0.6667 7 6 2.2972 2.1175 1.1163 8 6 2.1662 1.6834 2.5163 9 8 1.8669 0.5322 2.7705 10 7 2.3779 2.5613 3.5167 11 6 2.1310 2.1636 4.9048 12 6 2.4476 3.3361 5.8354 13 1 3.4671 3.6774 5.6559 14 6 1.4709 4.4817 5.5628 15 6 2.3099 2.8839 7.2905 16 7 2.7290 3.9727 8.1833 17 6 2.6094 3.5738 9.5921 18 6 3.0465 4.7135 10.4757 19 8 3.4204 5.7558 9.9807 20 7 3.0219 4.5748 11.8161 21 6 3.4201 5.6116 12.6200 22 1 3.7530 6.5396 12.1792 23 6 3.3942 5.4687 14.0019 24 7 2.9887 4.3397 14.5383 25 14 3.9360 6.8815 15.0972 26 1 3.0743 8.0639 14.8427 27 1 3.8157 6.4782 16.5213 28 1 5.3494 7.2256 14.7985 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.9428 4.0664 -1.4164 35 1 3.0249 4.2014 1.2663 36 1 2.6939 3.4566 3.3175 37 1 2.7680 1.3163 5.1589 38 1 1.0851 1.8795 5.0208 39 1 0.4514 4.1405 5.7422 40 1 1.6968 5.3172 6.2254 41 1 1.5690 4.8039 4.5260 42 1 2.9404 2.0112 7.4611 43 1 1.2705 2.6267 7.4942 44 1 2.2023 4.8136 8.0000 45 1 1.5720 3.3216 9.8116 46 1 3.2417 2.7058 9.7788 47 1 2.7233 3.7412 12.2120 48 1 2.9710 4.2398 15.5029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715225271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:49 Heat of formation + Delta-G solvation = -2.875663 kcal Electronic energy + Delta-G solvation = -27861.766131 eV Core-core repulsion = 23760.168972 eV Total energy + Delta-G solvation = -4101.597160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.92268 -39.85840 -38.41119 -37.31743 -35.31433 -34.66455 -33.88444 -32.61232 -31.25394 -31.03275 -30.17048 -27.44867 -27.08604 -25.09382 -24.43017 -23.56816 -22.79450 -21.61138 -20.81812 -20.03142 -19.24832 -18.35547 -17.88101 -16.83345 -16.49648 -16.28324 -15.84451 -15.71031 -15.36929 -15.10843 -14.93170 -14.56824 -14.30500 -14.28523 -14.20940 -13.74870 -13.54282 -13.35911 -13.03782 -13.00865 -12.83648 -12.67535 -12.51036 -12.09114 -11.75092 -11.61187 -11.55576 -11.26419 -11.19934 -11.08502 -11.01335 -10.94278 -10.45067 -10.41898 -10.22202 -9.70169 -9.50988 -9.47872 -9.35423 -8.48315 -8.09019 -7.97057 -6.42474 -3.83528 0.86167 1.95383 2.23506 2.79086 2.83388 3.19503 3.25374 3.29652 3.89690 4.06045 4.09955 4.17294 4.27480 4.52668 4.59661 4.65005 4.68620 4.75572 4.82373 4.84572 5.11016 5.13678 5.17957 5.24220 5.29214 5.30326 5.36061 5.39212 5.47715 5.55167 5.61293 5.67187 5.76557 5.80542 5.93433 5.96838 6.05029 6.08701 6.14123 6.25681 6.33435 6.99758 7.17283 7.54101 7.62853 7.63347 7.74134 8.05105 8.60221 9.16757 9.53258 10.04603 10.75118 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.001487 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.741603 B =18826.506314 C =19384.308658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.253 5.253 4 N -0.278 5.278 5 C -0.004 4.004 6 C -0.189 4.189 7 C -0.039 4.039 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.709 5.709 11 C 0.127 3.873 12 C -0.102 4.102 13 H 0.091 0.909 14 C -0.154 4.154 15 C 0.066 3.934 16 N -0.668 5.668 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.187 0.813 35 H 0.161 0.839 36 H 0.405 0.595 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -7.862 -27.643 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.041 5.041 4 N -0.110 5.110 5 C -0.179 4.179 6 C -0.218 4.218 7 C -0.168 4.168 8 C 0.376 3.624 9 O -0.418 6.418 10 N -0.361 5.361 11 C 0.003 3.997 12 C -0.121 4.121 13 H 0.109 0.891 14 C -0.211 4.211 15 C -0.064 4.064 16 N -0.302 5.302 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.204 0.796 35 H 0.179 0.821 36 H 0.241 0.759 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.170 0.830 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.538 -9.036 -28.497 30.238 hybrid contribution -0.526 1.135 1.571 2.009 sum -5.064 -7.900 -26.926 28.514 Atomic orbital electron populations 1.22082 0.93392 1.03637 1.03017 1.22254 0.96252 0.76500 1.06076 1.45882 1.44284 1.12403 1.01572 1.73219 1.18010 1.05951 1.13836 1.23593 1.04404 0.94938 0.94990 1.22290 1.06974 0.96789 0.95760 1.21407 1.11614 0.93983 0.89762 1.16893 0.77261 0.85123 0.83112 1.90786 1.48609 1.17848 1.84523 1.45670 1.67745 1.16320 1.06388 1.21465 1.01864 0.97632 0.78721 1.21375 1.01595 0.94837 0.94324 0.89082 1.21917 0.98910 0.98570 1.01708 1.21873 0.98558 0.95072 0.90897 1.60104 1.61773 1.05892 1.02387 1.21672 0.99723 0.98401 0.88458 1.19804 0.85245 0.89310 0.83084 1.90517 1.52348 1.29829 1.74163 1.41858 1.57743 1.16195 1.04164 1.19661 1.40568 0.95420 0.87405 0.87958 1.25262 0.97392 0.97910 0.97327 1.69599 1.47234 1.24896 1.12554 0.85912 0.79337 0.80605 0.78319 1.19925 1.20979 1.19879 0.91838 0.89942 0.91736 0.88354 0.86270 0.79602 0.82134 0.75924 0.90715 0.91052 0.92593 0.91274 0.92689 0.90698 0.95136 0.83042 0.93849 0.89539 0.77444 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.11 0.82 6.60 -4.04 -0.03 0.80 16 3 N -0.25 -2.42 3.35 -57.14 -0.19 -2.61 16 4 N -0.28 -2.72 11.90 30.59 0.36 -2.36 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.39 10.50 -38.99 -0.41 -1.80 16 7 C -0.04 -0.36 6.96 -82.06 -0.57 -0.94 16 8 C 0.59 5.86 7.79 -12.64 -0.10 5.76 16 9 O -0.54 -6.67 14.66 5.25 0.08 -6.59 16 10 N -0.71 -5.52 5.27 -61.47 -0.32 -5.84 16 11 C 0.13 1.05 5.07 -4.04 -0.02 1.03 16 12 C -0.10 -0.89 2.63 -90.62 -0.24 -1.13 16 13 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 14 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 15 C 0.07 0.73 5.14 -3.82 -0.02 0.71 16 16 N -0.67 -10.14 6.13 -115.06 -0.70 -10.84 16 17 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 18 C 0.44 10.26 7.82 -10.99 -0.09 10.17 16 19 O -0.58 -15.65 15.78 5.55 0.09 -15.57 16 20 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 25 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.12 0.99 6.16 -51.93 -0.32 0.67 16 34 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.16 0.71 7.58 -52.48 -0.40 0.31 16 36 H 0.41 2.33 6.69 -40.81 -0.27 2.05 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.67 6.68 -51.93 -0.35 0.33 16 41 H 0.05 0.37 7.18 -51.92 -0.37 -0.01 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.35 5.44 6.68 -39.29 -0.26 5.17 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -33.97 401.36 -7.55 -41.52 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.30 Total: 12.67 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.24 Total: 5.56 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.19 Total: -59.53 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.97 -7.55 -41.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715225271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.643 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds