Wall clock time and date at job start Tue Mar 31 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47466 * 2 1 4 4 N 1.28439 * 125.19364 * 270.91795 * 3 2 1 5 5 C 1.30865 * 110.93065 * 179.97438 * 4 3 2 6 6 C 1.39669 * 107.85752 * 359.77176 * 5 4 3 7 7 C 1.36603 * 125.18782 * 90.89048 * 3 2 1 8 8 C 1.47163 * 126.88676 * 359.97438 * 7 3 2 9 9 O 1.21632 * 119.99594 * 5.34179 * 8 7 3 10 10 N 1.34770 * 120.00321 * 185.34583 * 8 7 3 11 11 C 1.46494 * 120.00554 * 174.50460 * 10 8 7 12 12 C 1.53003 * 109.47750 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.46797 * 305.00234 * 12 11 10 14 14 C 1.52998 * 109.46823 * 64.99891 * 12 11 10 15 15 C 1.52996 * 109.47032 * 184.99908 * 12 11 10 16 16 N 1.46906 * 109.46515 * 174.99724 * 15 12 11 17 17 C 1.46906 * 110.99831 * 179.97438 * 16 15 12 18 18 C 1.50692 * 109.47273 * 180.02562 * 17 16 15 19 19 O 1.21293 * 119.99902 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00041 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99795 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00271 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99610 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00494 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99857 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47385 * 59.99886 * 25 23 21 27 27 H 1.48499 * 109.47495 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47238 * 299.99986 * 25 23 21 29 29 H 1.09000 * 109.46709 * 60.00039 * 1 2 3 30 30 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46766 * 299.99827 * 1 2 3 32 32 H 1.09003 * 109.47183 * 240.00031 * 2 1 3 33 33 H 1.09004 * 109.47155 * 120.00155 * 2 1 3 34 34 H 1.07998 * 126.06706 * 180.02562 * 5 4 3 35 35 H 1.08003 * 127.31563 * 180.23033 * 6 5 4 36 36 H 0.97012 * 119.99645 * 354.49658 * 10 8 7 37 37 H 1.09005 * 109.47048 * 59.99688 * 11 10 8 38 38 H 1.08998 * 109.47008 * 299.99989 * 11 10 8 39 39 H 1.08997 * 109.47411 * 60.00097 * 14 12 11 40 40 H 1.09003 * 109.46638 * 180.02562 * 14 12 11 41 41 H 1.09007 * 109.47189 * 300.00090 * 14 12 11 42 42 H 1.08997 * 109.47523 * 55.00416 * 15 12 11 43 43 H 1.08992 * 109.47151 * 294.99560 * 15 12 11 44 44 H 1.00906 * 110.99678 * 56.05144 * 16 15 12 45 45 H 1.08996 * 109.47547 * 300.00637 * 17 16 15 46 46 H 1.09001 * 109.46676 * 60.00430 * 17 16 15 47 47 H 0.96992 * 120.00032 * 0.02562 * 20 18 17 48 48 H 0.96994 * 120.00688 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2494 2.0846 -1.0495 5 6 2.6766 3.2788 -0.7271 6 6 2.7214 3.3559 0.6667 7 6 2.2972 2.1175 1.1163 8 6 2.1662 1.6834 2.5163 9 8 1.8669 0.5322 2.7705 10 7 2.3779 2.5613 3.5167 11 6 2.1310 2.1636 4.9048 12 6 2.4476 3.3361 5.8354 13 1 3.4671 3.6774 5.6559 14 6 1.4709 4.4817 5.5628 15 6 2.3099 2.8839 7.2905 16 7 2.7290 3.9727 8.1833 17 6 2.6094 3.5738 9.5921 18 6 3.0465 4.7135 10.4757 19 8 3.4204 5.7558 9.9807 20 7 3.0219 4.5748 11.8161 21 6 3.4201 5.6116 12.6200 22 1 3.7530 6.5396 12.1792 23 6 3.3942 5.4687 14.0019 24 7 2.9887 4.3397 14.5383 25 14 3.9360 6.8815 15.0972 26 1 3.0743 8.0639 14.8427 27 1 3.8157 6.4782 16.5213 28 1 5.3494 7.2256 14.7985 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.9428 4.0664 -1.4164 35 1 3.0249 4.2014 1.2663 36 1 2.6939 3.4566 3.3175 37 1 2.7680 1.3163 5.1589 38 1 1.0851 1.8795 5.0208 39 1 0.4514 4.1405 5.7422 40 1 1.6968 5.3172 6.2254 41 1 1.5690 4.8039 4.5260 42 1 2.9404 2.0112 7.4611 43 1 1.2705 2.6267 7.4942 44 1 2.2023 4.8136 8.0000 45 1 1.5720 3.3216 9.8116 46 1 3.2417 2.7058 9.7788 47 1 2.7233 3.7412 12.2120 48 1 2.9710 4.2398 15.5029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715225271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:49 Heat of formation + Delta-G solvation = -28.774915 kcal Electronic energy + Delta-G solvation = -27862.889207 eV Core-core repulsion = 23760.168972 eV Total energy + Delta-G solvation = -4102.720235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53756 -40.61599 -40.14074 -38.32250 -36.28279 -35.81681 -35.31187 -33.59025 -33.18646 -31.76213 -30.74179 -28.78833 -27.82559 -26.60055 -25.22522 -24.61299 -23.58734 -22.26360 -21.56579 -21.13854 -20.63086 -19.89664 -19.00045 -17.94703 -17.39673 -17.11481 -17.02049 -16.70154 -16.44462 -16.16208 -16.00800 -15.70841 -15.52770 -15.38828 -15.06584 -14.77661 -14.70971 -14.33028 -14.00854 -13.90533 -13.59969 -13.51392 -13.43386 -13.32832 -13.06803 -13.03374 -12.77959 -12.42380 -12.32684 -12.12634 -12.05318 -11.84113 -11.83093 -11.73827 -11.48878 -11.18763 -10.41305 -10.33246 -10.09207 -10.00712 -9.98766 -9.30332 -8.45546 -5.94513 0.20103 1.35425 1.40935 1.42959 1.53805 1.64617 2.06505 2.11933 2.14643 2.30646 2.96324 3.21822 3.52026 3.55067 3.56973 3.91548 3.94351 3.98432 4.00713 4.07661 4.19058 4.29341 4.34563 4.48941 4.54516 4.57832 4.59010 4.60125 4.67064 4.74987 4.82234 4.82323 4.87294 4.97259 5.03162 5.06833 5.22215 5.34799 5.41614 5.43089 5.55608 5.74121 5.90066 6.11567 6.35244 6.44826 6.61086 6.98780 7.09169 7.13389 7.57394 8.12454 8.71501 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.001487 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.741603 B =18826.506314 C =19384.308658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.105 3.895 3 N -0.264 5.264 4 N -0.302 5.302 5 C -0.008 4.008 6 C -0.179 4.179 7 C -0.061 4.061 8 C 0.590 3.410 9 O -0.570 6.570 10 N -0.697 5.697 11 C 0.134 3.866 12 C -0.089 4.089 13 H 0.088 0.912 14 C -0.152 4.152 15 C 0.066 3.934 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.215 0.785 35 H 0.191 0.809 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.345 0.655 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 -7.642 -28.296 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.014 4.014 3 N -0.053 5.053 4 N -0.134 5.134 5 C -0.183 4.183 6 C -0.208 4.208 7 C -0.190 4.190 8 C 0.376 3.624 9 O -0.451 6.451 10 N -0.349 5.349 11 C 0.011 3.989 12 C -0.108 4.108 13 H 0.106 0.894 14 C -0.209 4.209 15 C -0.064 4.064 16 N -0.315 5.315 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.232 0.768 35 H 0.208 0.792 36 H 0.254 0.746 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.165 0.835 45 H 0.084 0.916 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.634 -8.825 -29.157 30.814 hybrid contribution -0.489 1.073 1.698 2.068 sum -5.124 -7.752 -27.458 28.988 Atomic orbital electron populations 1.22019 0.92790 1.04548 1.01912 1.22331 0.96742 0.76204 1.06170 1.46061 1.44738 1.12887 1.01621 1.73198 1.18909 1.06979 1.14360 1.24181 1.03427 0.94893 0.95827 1.22704 1.05400 0.96740 0.95929 1.21548 1.12930 0.94991 0.89488 1.17035 0.76853 0.84868 0.83674 1.90769 1.50175 1.19141 1.84977 1.45548 1.67004 1.16568 1.05812 1.21330 1.01682 0.97138 0.78786 1.21214 1.01592 0.95024 0.92994 0.89393 1.21901 0.98778 0.97724 1.02520 1.21968 0.99264 0.93917 0.91223 1.60104 1.62550 1.07077 1.01747 1.21536 1.01046 0.95872 0.88435 1.20899 0.83384 0.90305 0.82958 1.90484 1.53657 1.31996 1.74803 1.41936 1.58342 1.15879 1.04903 1.19651 1.42612 0.95736 0.88557 0.90231 1.26038 0.96862 1.00355 0.97977 1.69662 1.47215 1.26098 1.13120 0.84985 0.78758 0.77656 0.76911 1.19640 1.19559 1.19758 0.92021 0.88072 0.93516 0.87017 0.87336 0.76819 0.79219 0.74585 0.91263 0.91126 0.92377 0.92818 0.90829 0.90149 0.93955 0.83474 0.91606 0.87825 0.76982 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.24 71.98 0.74 -1.29 16 2 C 0.10 1.59 6.60 86.38 0.57 2.16 16 3 N -0.26 -4.94 3.35 -334.68 -1.12 -6.06 16 4 N -0.30 -5.65 11.90 -57.14 -0.68 -6.33 16 5 C -0.01 -0.11 12.03 85.18 1.02 0.91 16 6 C -0.18 -2.26 10.50 22.66 0.24 -2.02 16 7 C -0.06 -1.09 6.96 40.79 0.28 -0.80 16 8 C 0.59 11.25 7.79 86.59 0.67 11.93 16 9 O -0.57 -14.10 14.66 -4.13 -0.06 -14.16 16 10 N -0.70 -9.73 5.27 -466.64 -2.46 -12.19 16 11 C 0.13 2.02 5.07 86.38 0.44 2.46 16 12 C -0.09 -1.40 2.63 -10.79 -0.03 -1.43 16 13 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 14 C -0.15 -2.24 8.84 71.98 0.64 -1.60 16 15 C 0.07 1.31 5.14 86.30 0.44 1.76 16 16 N -0.68 -19.82 6.13 -517.94 -3.17 -22.99 16 17 C 0.06 2.09 6.17 85.55 0.53 2.62 16 18 C 0.44 20.45 7.82 87.65 0.69 21.14 16 19 O -0.62 -33.94 15.78 -3.07 -0.05 -33.99 16 20 N -0.57 -29.17 5.29 -306.99 -1.62 -30.79 16 21 C -0.34 -18.98 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 24 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 25 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.11 1.88 6.16 -2.38 -0.01 1.86 16 34 H 0.22 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.19 1.06 7.58 -2.91 -0.02 1.04 16 36 H 0.42 3.81 6.69 -92.70 -0.62 3.19 16 37 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.99 6.68 -2.39 -0.02 0.97 16 41 H 0.07 0.80 7.18 -2.38 -0.02 0.78 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.35 10.51 6.68 -89.69 -0.60 9.91 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -74.13 401.36 -0.29 -74.43 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -0.95 Total: 39.09 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 7.51 Total: 17.47 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -8.77 Total: -127.45 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.11 Total: -48.15 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.13 -0.29 -74.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715225271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.650 kcal (2) G-P(sol) polarization free energy of solvation -74.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds