Wall clock time and date at job start Tue Mar 31 2020 20:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47123 * 2 1 4 4 C 1.35033 * 124.89083 * 124.97354 * 3 2 1 5 5 C 1.35363 * 107.23039 * 179.72714 * 4 3 2 6 6 C 1.41505 * 105.50488 * 0.40702 * 5 4 3 7 7 C 1.47702 * 126.51914 * 179.84617 * 6 5 4 8 8 O 1.21573 * 120.00196 * 359.71886 * 7 6 5 9 9 N 1.34778 * 119.99897 * 179.71827 * 7 6 5 10 10 C 1.46500 * 120.00010 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47515 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47160 * 54.99596 * 11 10 9 13 13 C 1.53006 * 109.46626 * 294.99964 * 11 10 9 14 14 C 1.52997 * 109.47592 * 174.99929 * 11 10 9 15 15 N 1.46900 * 109.47171 * 184.99707 * 14 11 10 16 16 C 1.46904 * 110.99705 * 179.97438 * 15 14 11 17 17 C 1.50704 * 109.46884 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99639 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99845 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99512 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00376 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99866 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00458 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46838 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47442 * 120.00122 * 24 22 20 27 27 H 1.48500 * 109.47546 * 240.00138 * 24 22 20 28 28 N 1.28471 * 124.88265 * 304.96817 * 3 2 1 29 29 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47361 * 300.00576 * 1 2 3 31 31 H 1.08994 * 109.46627 * 60.00896 * 1 2 3 32 32 H 1.08993 * 109.47361 * 239.99424 * 2 1 3 33 33 H 1.09008 * 109.46558 * 119.99217 * 2 1 3 34 34 H 1.07999 * 126.38154 * 359.97438 * 4 3 2 35 35 H 1.08007 * 127.24751 * 180.26292 * 5 4 3 36 36 H 0.96996 * 119.99957 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47421 * 59.99790 * 10 9 7 38 38 H 1.09000 * 109.47046 * 299.99771 * 10 9 7 39 39 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47050 * 299.99699 * 13 11 10 41 41 H 1.09001 * 109.46801 * 59.99811 * 13 11 10 42 42 H 1.09001 * 109.46992 * 305.00257 * 14 11 10 43 43 H 1.08998 * 109.47097 * 64.99445 * 14 11 10 44 44 H 1.00898 * 110.99685 * 56.04556 * 15 14 11 45 45 H 1.08998 * 109.47285 * 300.00060 * 16 15 14 46 46 H 1.09003 * 109.47029 * 60.00806 * 16 15 14 47 47 H 0.96993 * 119.99907 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8744 1.8978 0.9076 5 6 3.0872 3.1906 0.5676 6 6 2.3006 3.4123 -0.5877 7 6 2.1863 4.6758 -1.3440 8 8 2.8031 5.6589 -0.9820 9 7 1.3981 4.7389 -2.4355 10 6 1.2851 5.9919 -3.1860 11 6 0.3355 5.7940 -4.3692 12 1 -0.6209 5.4158 -4.0081 13 6 0.9443 4.7888 -5.3490 14 6 0.1197 7.1318 -5.0794 15 7 -0.8831 6.9670 -6.1401 16 6 -1.1171 8.2345 -6.8450 17 6 -2.1487 8.0264 -7.9237 18 8 -2.6408 6.9301 -8.0887 19 7 -2.5243 9.0583 -8.7050 20 6 -3.4631 8.8690 -9.6859 21 1 -3.9020 7.8931 -9.8324 22 6 -3.8508 9.9330 -10.4911 23 7 -3.3171 11.1207 -10.3126 24 14 -5.1305 9.6755 -11.8273 25 1 -5.5728 8.2578 -11.8223 26 1 -6.2970 10.5584 -11.5723 27 1 -4.5395 10.0055 -13.1490 28 7 1.6938 2.2752 -0.8636 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3113 1.3755 1.7459 35 1 3.7217 3.9036 1.0731 36 1 0.9063 3.9544 -2.7245 37 1 2.2684 6.2851 -3.5539 38 1 0.8939 6.7724 -2.5333 39 1 0.2676 4.6474 -6.1917 40 1 1.9007 5.1670 -5.7100 41 1 1.0980 3.8357 -4.8430 42 1 -0.2303 7.8726 -4.3604 43 1 1.0600 7.4666 -5.5172 44 1 -1.7446 6.5957 -5.7687 45 1 -1.4759 8.9825 -6.1380 46 1 -0.1854 8.5772 -7.2951 47 1 -2.1304 9.9348 -8.5732 48 1 -3.5875 11.8634 -10.8749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715259896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:52 Heat of formation + Delta-G solvation = -2.222623 kcal Electronic energy + Delta-G solvation = -27567.628827 eV Core-core repulsion = 23466.059985 eV Total energy + Delta-G solvation = -4101.568842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.02800 -39.65241 -38.33383 -37.12606 -35.05326 -34.84123 -33.83458 -32.36262 -31.18856 -31.03605 -30.41115 -27.38129 -26.98710 -25.29195 -24.48995 -23.17894 -22.27832 -21.77074 -20.68110 -20.02816 -19.16141 -18.24535 -17.83530 -17.01761 -16.49618 -16.26476 -15.84489 -15.69208 -15.30117 -14.94739 -14.72182 -14.56233 -14.28778 -14.13385 -14.00295 -13.61246 -13.56862 -13.27163 -13.16932 -12.90922 -12.71373 -12.53385 -12.33933 -12.02011 -11.88119 -11.64289 -11.49632 -11.25432 -11.12092 -11.00129 -10.95797 -10.81239 -10.33249 -10.32039 -10.20363 -9.66921 -9.49990 -9.46307 -9.18211 -8.43229 -8.01793 -7.93315 -6.39770 -3.80547 1.27100 1.78319 1.99323 2.97195 3.17801 3.21948 3.28207 3.35525 3.83029 3.93657 4.12035 4.26812 4.33230 4.36176 4.38195 4.52907 4.77324 4.78109 4.91565 4.99931 5.03025 5.15227 5.20678 5.28091 5.30023 5.39985 5.41215 5.51427 5.53181 5.65636 5.74324 5.80852 5.92320 5.97457 6.02206 6.02439 6.15025 6.28900 6.30502 6.34925 6.46184 7.23610 7.24608 7.57052 7.57272 7.69303 8.02544 8.08788 8.63570 9.20040 9.56848 10.08283 10.78075 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.001511 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.495154 B =18524.174143 C =19446.973319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.281 5.281 4 C -0.021 4.021 5 C -0.179 4.179 6 C -0.018 4.018 7 C 0.603 3.397 8 O -0.535 6.535 9 N -0.713 5.713 10 C 0.124 3.876 11 C -0.100 4.100 12 H 0.077 0.923 13 C -0.140 4.140 14 C 0.066 3.934 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 N -0.258 5.258 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.182 0.818 35 H 0.162 0.838 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.632 -19.573 24.152 33.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.070 5.070 4 C -0.163 4.163 5 C -0.207 4.207 6 C -0.178 4.178 7 C 0.388 3.612 8 O -0.410 6.410 9 N -0.365 5.365 10 C 0.000 4.000 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.198 4.198 14 C -0.064 4.064 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 N -0.095 5.095 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.199 0.801 35 H 0.180 0.820 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.369 -20.259 22.955 33.020 hybrid contribution -0.515 0.962 0.565 1.229 sum 11.853 -19.297 23.520 32.651 Atomic orbital electron populations 1.22087 0.92901 1.03579 1.04075 1.22043 0.96873 0.76612 1.04855 1.45649 1.32339 1.10420 1.18630 1.22892 0.99222 0.95551 0.98635 1.21794 1.04406 0.96140 0.98371 1.21951 1.02897 0.93161 0.99808 1.16876 0.79156 0.85444 0.79764 1.90803 1.46049 1.35720 1.68395 1.45847 1.47650 1.15057 1.27970 1.21447 1.00375 0.85615 0.92555 1.21339 0.98866 0.97156 0.94513 0.90489 1.21762 1.01358 0.97122 0.99534 1.21896 0.97178 0.94840 0.92495 1.60046 1.14517 1.26806 1.28447 1.21670 0.99586 0.90825 0.96134 1.19824 0.86310 0.85640 0.85531 1.90517 1.58738 1.24861 1.72659 1.41871 1.37536 1.10397 1.30324 1.19758 1.16307 0.97614 1.09164 0.87873 1.25265 0.98856 0.94769 0.99106 1.69624 1.43594 1.00627 1.40478 0.85799 0.79862 0.78616 0.80047 1.19239 1.20803 1.20754 1.73447 1.22113 0.98068 1.15837 0.90102 0.91816 0.90591 0.88729 0.87829 0.80110 0.82025 0.75729 0.90952 0.91242 0.90441 0.92774 0.93634 0.95227 0.90683 0.83258 0.93865 0.89573 0.77451 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.02 37.16 0.37 -0.19 16 2 C 0.12 0.35 7.12 -4.04 -0.03 0.32 16 3 N -0.28 -1.93 3.41 -61.33 -0.21 -2.14 16 4 C -0.02 -0.13 11.40 -17.17 -0.20 -0.32 16 5 C -0.18 -1.61 10.81 -39.36 -0.43 -2.04 16 6 C -0.02 -0.20 7.13 -82.77 -0.59 -0.79 16 7 C 0.60 7.55 7.82 -12.39 -0.10 7.45 16 8 O -0.53 -8.26 16.93 5.30 0.09 -8.17 16 9 N -0.71 -7.54 5.28 -61.29 -0.32 -7.86 16 10 C 0.12 1.30 5.06 -4.04 -0.02 1.27 16 11 C -0.10 -1.04 2.57 -90.62 -0.23 -1.27 16 12 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.14 -1.54 8.95 37.16 0.33 -1.21 16 14 C 0.07 0.80 5.07 -3.83 -0.02 0.78 16 15 N -0.67 -10.57 5.58 -115.05 -0.64 -11.21 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 18 O -0.58 -15.90 15.78 5.55 0.09 -15.82 16 19 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 24 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 N -0.26 -2.48 11.36 33.42 0.38 -2.10 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.10 0.02 8.04 -51.92 -0.42 -0.40 16 34 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 35 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.41 3.81 7.38 -40.82 -0.30 3.51 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.02 7.75 -51.93 -0.40 0.61 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 408.58 15.07 6.16 6.16 Total: -1.00 -35.32 408.58 -7.65 -42.97 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -7.57 Total: 13.31 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.26 Total: 7.21 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.13 Total: -61.83 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.18 Total: -23.99 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.32 -7.65 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715259896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.750 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds