Wall clock time and date at job start Tue Mar 31 2020 20:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47123 * 2 1 4 4 C 1.35033 * 124.89083 * 124.97354 * 3 2 1 5 5 C 1.35363 * 107.23039 * 179.72714 * 4 3 2 6 6 C 1.41505 * 105.50488 * 0.40702 * 5 4 3 7 7 C 1.47702 * 126.51914 * 179.84617 * 6 5 4 8 8 O 1.21573 * 120.00196 * 359.71886 * 7 6 5 9 9 N 1.34778 * 119.99897 * 179.71827 * 7 6 5 10 10 C 1.46500 * 120.00010 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47515 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47160 * 54.99596 * 11 10 9 13 13 C 1.53006 * 109.46626 * 294.99964 * 11 10 9 14 14 C 1.52997 * 109.47592 * 174.99929 * 11 10 9 15 15 N 1.46900 * 109.47171 * 184.99707 * 14 11 10 16 16 C 1.46904 * 110.99705 * 179.97438 * 15 14 11 17 17 C 1.50704 * 109.46884 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99639 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99845 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99512 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00376 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99866 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00458 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46838 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47442 * 120.00122 * 24 22 20 27 27 H 1.48500 * 109.47546 * 240.00138 * 24 22 20 28 28 N 1.28471 * 124.88265 * 304.96817 * 3 2 1 29 29 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47361 * 300.00576 * 1 2 3 31 31 H 1.08994 * 109.46627 * 60.00896 * 1 2 3 32 32 H 1.08993 * 109.47361 * 239.99424 * 2 1 3 33 33 H 1.09008 * 109.46558 * 119.99217 * 2 1 3 34 34 H 1.07999 * 126.38154 * 359.97438 * 4 3 2 35 35 H 1.08007 * 127.24751 * 180.26292 * 5 4 3 36 36 H 0.96996 * 119.99957 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47421 * 59.99790 * 10 9 7 38 38 H 1.09000 * 109.47046 * 299.99771 * 10 9 7 39 39 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47050 * 299.99699 * 13 11 10 41 41 H 1.09001 * 109.46801 * 59.99811 * 13 11 10 42 42 H 1.09001 * 109.46992 * 305.00257 * 14 11 10 43 43 H 1.08998 * 109.47097 * 64.99445 * 14 11 10 44 44 H 1.00898 * 110.99685 * 56.04556 * 15 14 11 45 45 H 1.08998 * 109.47285 * 300.00060 * 16 15 14 46 46 H 1.09003 * 109.47029 * 60.00806 * 16 15 14 47 47 H 0.96993 * 119.99907 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8744 1.8978 0.9076 5 6 3.0872 3.1906 0.5676 6 6 2.3006 3.4123 -0.5877 7 6 2.1863 4.6758 -1.3440 8 8 2.8031 5.6589 -0.9820 9 7 1.3981 4.7389 -2.4355 10 6 1.2851 5.9919 -3.1860 11 6 0.3355 5.7940 -4.3692 12 1 -0.6209 5.4158 -4.0081 13 6 0.9443 4.7888 -5.3490 14 6 0.1197 7.1318 -5.0794 15 7 -0.8831 6.9670 -6.1401 16 6 -1.1171 8.2345 -6.8450 17 6 -2.1487 8.0264 -7.9237 18 8 -2.6408 6.9301 -8.0887 19 7 -2.5243 9.0583 -8.7050 20 6 -3.4631 8.8690 -9.6859 21 1 -3.9020 7.8931 -9.8324 22 6 -3.8508 9.9330 -10.4911 23 7 -3.3171 11.1207 -10.3126 24 14 -5.1305 9.6755 -11.8273 25 1 -5.5728 8.2578 -11.8223 26 1 -6.2970 10.5584 -11.5723 27 1 -4.5395 10.0055 -13.1490 28 7 1.6938 2.2752 -0.8636 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3113 1.3755 1.7459 35 1 3.7217 3.9036 1.0731 36 1 0.9063 3.9544 -2.7245 37 1 2.2684 6.2851 -3.5539 38 1 0.8939 6.7724 -2.5333 39 1 0.2676 4.6474 -6.1917 40 1 1.9007 5.1670 -5.7100 41 1 1.0980 3.8357 -4.8430 42 1 -0.2303 7.8726 -4.3604 43 1 1.0600 7.4666 -5.5172 44 1 -1.7446 6.5957 -5.7687 45 1 -1.4759 8.9825 -6.1380 46 1 -0.1854 8.5772 -7.2951 47 1 -2.1304 9.9348 -8.5732 48 1 -3.5875 11.8634 -10.8749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715259896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:51 Heat of formation + Delta-G solvation = -29.569730 kcal Electronic energy + Delta-G solvation = -27568.814687 eV Core-core repulsion = 23466.059985 eV Total energy + Delta-G solvation = -4102.754701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.60934 -40.59886 -40.14157 -38.26239 -36.19495 -35.66128 -35.45953 -33.49444 -33.15867 -31.66202 -30.92612 -28.83721 -27.84319 -26.68369 -25.54033 -24.27767 -22.98546 -22.34075 -21.63976 -21.09179 -20.68991 -19.88811 -18.86486 -17.84524 -17.60771 -17.14630 -16.97597 -16.84979 -16.53946 -16.28934 -15.98475 -15.46638 -15.41026 -15.24226 -15.17944 -14.72339 -14.56557 -14.33737 -14.03952 -13.90920 -13.56616 -13.41517 -13.28745 -13.15477 -13.01952 -12.96314 -12.84112 -12.40294 -12.31660 -12.11441 -12.02797 -11.98818 -11.83820 -11.72839 -11.50808 -11.29912 -10.34774 -10.33767 -10.13273 -10.00960 -9.94745 -9.28992 -8.46380 -5.95213 0.52629 1.21419 1.37038 1.42178 1.55585 1.56584 2.05949 2.14205 2.30237 2.36198 2.95545 3.20991 3.34021 3.53266 3.84449 3.87103 3.98161 4.00159 4.05938 4.06302 4.28251 4.34085 4.37833 4.48496 4.50034 4.59117 4.63028 4.72661 4.74533 4.80043 4.82095 4.83285 4.88816 4.96451 5.07242 5.23541 5.23699 5.35322 5.41501 5.42373 5.50708 5.89261 5.91226 6.10934 6.39119 6.43567 6.60576 6.90715 7.13040 7.14029 7.56902 8.12080 8.71262 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.001511 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.495154 B =18524.174143 C =19446.973319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.277 5.277 4 C 0.000 4.000 5 C -0.206 4.206 6 C -0.050 4.050 7 C 0.600 3.400 8 O -0.573 6.573 9 N -0.705 5.705 10 C 0.130 3.870 11 C -0.087 4.087 12 H 0.081 0.919 13 C -0.135 4.135 14 C 0.068 3.932 15 N -0.677 5.677 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 N -0.273 5.273 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.227 0.773 35 H 0.162 0.838 36 H 0.413 0.587 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.344 0.656 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.077 -20.924 25.377 35.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.235 4.235 6 C -0.208 4.208 7 C 0.385 3.615 8 O -0.452 6.452 9 N -0.356 5.356 10 C 0.006 3.994 11 C -0.106 4.106 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.061 4.061 15 N -0.310 5.310 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.196 1.196 28 N -0.111 5.111 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.243 0.757 35 H 0.179 0.821 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.163 0.837 45 H 0.084 0.916 46 H 0.121 0.879 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.817 -21.611 24.177 34.869 hybrid contribution -0.640 1.260 0.251 1.435 sum 12.177 -20.351 24.428 34.046 Atomic orbital electron populations 1.22066 0.93346 1.04519 1.02476 1.22472 0.96532 0.74828 1.07236 1.46120 1.31593 1.11143 1.17779 1.23500 0.97534 0.94537 0.98664 1.22014 1.05174 0.97805 0.98471 1.21868 1.04798 0.93128 1.01011 1.17182 0.78650 0.85749 0.79879 1.90764 1.47711 1.37173 1.69515 1.45795 1.47116 1.15266 1.27461 1.21356 1.00089 0.85614 0.92326 1.21197 0.98990 0.96283 0.94140 0.90093 1.21696 1.00712 0.97944 0.98929 1.21954 0.96286 0.96009 0.91897 1.60040 1.14949 1.25974 1.29996 1.21532 0.98144 0.92315 0.94794 1.20888 0.86313 0.84485 0.85743 1.90486 1.60250 1.26337 1.73831 1.41942 1.37600 1.11064 1.30527 1.19719 1.18177 0.97218 1.11265 0.90294 1.26051 1.00355 0.94248 1.00660 1.69683 1.44228 1.01104 1.41152 0.84856 0.77617 0.78259 0.77499 1.19788 1.19589 1.19629 1.73392 1.22493 0.98210 1.16986 0.87908 0.92597 0.92955 0.87856 0.83981 0.75676 0.82078 0.75011 0.91261 0.91366 0.92592 0.92801 0.92436 0.93863 0.90080 0.83742 0.91577 0.87851 0.76980 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.02 71.98 0.72 -0.10 16 2 C 0.11 0.34 7.12 86.38 0.61 0.95 16 3 N -0.28 -3.24 3.41 -347.96 -1.19 -4.43 16 4 C 0.00 0.00 11.40 83.54 0.95 0.96 16 5 C -0.21 -3.61 10.81 22.41 0.24 -3.37 16 6 C -0.05 -1.10 7.13 42.46 0.30 -0.79 16 7 C 0.60 15.44 7.82 86.74 0.68 16.11 16 8 O -0.57 -18.38 16.93 -3.94 -0.07 -18.45 16 9 N -0.71 -14.96 5.28 -466.10 -2.46 -17.42 16 10 C 0.13 2.67 5.06 86.38 0.44 3.10 16 11 C -0.09 -1.75 2.57 -10.79 -0.03 -1.78 16 12 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 13 C -0.14 -2.91 8.95 71.98 0.64 -2.26 16 14 C 0.07 1.55 5.07 86.30 0.44 1.99 16 15 N -0.68 -20.98 5.58 -517.92 -2.89 -23.87 16 16 C 0.06 2.22 6.17 85.56 0.53 2.75 16 17 C 0.44 21.04 7.82 87.66 0.69 21.73 16 18 O -0.62 -34.73 15.78 -3.06 -0.05 -34.78 16 19 N -0.57 -29.81 5.29 -306.98 -1.62 -31.44 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 23 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 24 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 N -0.27 -5.09 11.36 -48.18 -0.55 -5.64 16 29 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 32 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.14 -0.61 8.04 -2.38 -0.02 -0.63 16 34 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 35 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.41 7.70 7.38 -92.71 -0.68 7.01 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.46 7.75 -2.39 -0.02 1.45 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.08 7.18 -2.39 -0.02 1.06 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.34 11.16 8.43 -89.70 -0.76 10.40 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 48 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -78.82 408.58 -0.19 -79.01 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: -1.18 Total: 40.89 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.50 Total: 20.63 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -8.42 Total: -132.64 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.12 Total: -53.23 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -78.82 -0.19 -79.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715259896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.443 kcal (2) G-P(sol) polarization free energy of solvation -78.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds