Wall clock time and date at job start Tue Mar 31 2020 20:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47290 * 2 1 4 4 C 1.35031 * 124.88418 * 124.99598 * 3 2 1 5 5 C 1.35367 * 107.22543 * 179.76759 * 4 3 2 6 6 C 1.41494 * 105.50576 * 0.23337 * 5 4 3 7 7 C 1.47709 * 126.52007 * 179.97438 * 6 5 4 8 8 O 1.21576 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00121 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99818 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47310 * 304.99946 * 11 10 9 13 13 C 1.53001 * 109.47314 * 65.00089 * 11 10 9 14 14 C 1.53007 * 109.46870 * 184.99933 * 11 10 9 15 15 N 1.46899 * 109.46794 * 175.00348 * 14 11 10 16 16 C 1.46901 * 110.99498 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.46789 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00085 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99926 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00025 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99875 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99761 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00316 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99701 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47562 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.46941 * 120.00356 * 24 22 20 27 27 H 1.48502 * 109.47476 * 239.99905 * 24 22 20 28 28 N 1.28472 * 124.88401 * 305.18268 * 3 2 1 29 29 H 1.09007 * 109.46813 * 300.00146 * 1 2 3 30 30 H 1.08995 * 109.47189 * 59.99476 * 1 2 3 31 31 H 1.08998 * 109.47405 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47166 * 239.99694 * 2 1 3 33 33 H 1.09006 * 109.47050 * 119.99781 * 2 1 3 34 34 H 1.08002 * 126.38961 * 0.04238 * 4 3 2 35 35 H 1.08008 * 127.24664 * 180.24553 * 5 4 3 36 36 H 0.97003 * 119.99961 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.47028 * 299.99369 * 10 9 7 38 38 H 1.08996 * 109.47545 * 60.00205 * 10 9 7 39 39 H 1.09002 * 109.47161 * 299.99930 * 13 11 10 40 40 H 1.09001 * 109.47048 * 59.99697 * 13 11 10 41 41 H 1.08998 * 109.47072 * 179.97438 * 13 11 10 42 42 H 1.09006 * 109.46908 * 294.99985 * 14 11 10 43 43 H 1.08995 * 109.47123 * 55.00119 * 14 11 10 44 44 H 1.00906 * 110.99915 * 303.94801 * 15 14 11 45 45 H 1.09006 * 109.46849 * 299.99300 * 16 15 14 46 46 H 1.08996 * 109.47703 * 59.99712 * 16 15 14 47 47 H 0.97006 * 119.99899 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99892 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0868 3.1907 0.5680 6 6 2.3027 3.4116 -0.5889 7 6 2.1906 4.6744 -1.3469 8 8 2.8110 5.6562 -0.9874 9 7 1.4005 4.7382 -2.4369 10 6 1.2898 5.9906 -3.1890 11 6 0.3373 5.7936 -4.3701 12 1 0.6768 4.9523 -4.9743 13 6 -1.0721 5.5097 -3.8469 14 6 0.3177 7.0615 -5.2264 15 7 -0.5023 6.8313 -6.4233 16 6 -0.5436 8.0300 -7.2715 17 6 -1.3914 7.7562 -8.4869 18 8 -1.9097 6.6694 -8.6325 19 7 -1.5736 8.7191 -9.4122 20 6 -2.3445 8.4699 -10.5183 21 1 -2.8060 7.5021 -10.6479 22 6 -2.5319 9.4625 -11.4724 23 7 -1.9699 10.6399 -11.3150 24 14 -3.5816 9.1227 -12.9798 25 1 -4.0964 7.7310 -12.9211 26 1 -4.7236 10.0716 -13.0118 27 1 -2.7598 9.2957 -14.2046 28 7 1.6909 2.2764 -0.8614 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.3128 1.3749 1.7449 35 1 3.7212 3.9037 1.0737 36 1 0.9052 3.9549 -2.7235 37 1 0.9021 6.7730 -2.5367 38 1 2.2732 6.2803 -3.5593 39 1 -1.0582 4.6065 -3.2368 40 1 -1.4116 6.3510 -3.2426 41 1 -1.7507 5.3699 -4.6883 42 1 -0.1052 7.8835 -4.6487 43 1 1.3350 7.3135 -5.5258 44 1 -0.1685 6.0329 -6.9422 45 1 -0.9723 8.8590 -6.7082 46 1 0.4678 8.2883 -7.5851 47 1 -1.1588 9.5883 -9.2960 48 1 -2.1011 11.3328 -11.9809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715259897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:54 Heat of formation + Delta-G solvation = -29.586927 kcal Electronic energy + Delta-G solvation = -27571.060567 eV Core-core repulsion = 23468.305121 eV Total energy + Delta-G solvation = -4102.755447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.60952 -40.59801 -40.14072 -38.26166 -36.19466 -35.66098 -35.45896 -33.49439 -33.15909 -31.66208 -30.92472 -28.83717 -27.84303 -26.68351 -25.54024 -24.27681 -22.98398 -22.34116 -21.63986 -21.09127 -20.68958 -19.88734 -18.86645 -17.84806 -17.58329 -17.13277 -16.99075 -16.91833 -16.52173 -16.21936 -15.98299 -15.57234 -15.35634 -15.24181 -15.16839 -14.72022 -14.54271 -14.35786 -14.05744 -13.88918 -13.56522 -13.41565 -13.29080 -13.15276 -13.01184 -12.97024 -12.84158 -12.40293 -12.31254 -12.11448 -12.03098 -11.98947 -11.83642 -11.72869 -11.50802 -11.29882 -10.34760 -10.33784 -10.13255 -10.00987 -9.94751 -9.28984 -8.46390 -5.95203 0.52659 1.21410 1.37036 1.42176 1.55592 1.56589 2.05948 2.14212 2.30225 2.36186 2.95560 3.21016 3.34073 3.53285 3.84371 3.87146 3.98146 4.00141 4.06167 4.06182 4.28297 4.34072 4.37884 4.48528 4.50108 4.59093 4.63013 4.72660 4.74568 4.80070 4.82143 4.83236 4.88957 4.96480 5.07175 5.23551 5.23849 5.35324 5.41505 5.42385 5.50639 5.89265 5.91225 6.10946 6.39112 6.43558 6.60581 6.90711 7.13055 7.14027 7.56896 8.12074 8.71252 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.001508 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.063261 B =18565.103394 C =19481.275602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.277 5.277 4 C 0.000 4.000 5 C -0.207 4.207 6 C -0.050 4.050 7 C 0.600 3.400 8 O -0.574 6.574 9 N -0.705 5.705 10 C 0.130 3.870 11 C -0.087 4.087 12 H 0.081 0.919 13 C -0.135 4.135 14 C 0.068 3.932 15 N -0.677 5.677 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 N -0.273 5.273 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.227 0.773 35 H 0.162 0.838 36 H 0.413 0.587 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.344 0.656 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.649 -20.056 27.181 35.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.235 4.235 6 C -0.208 4.208 7 C 0.385 3.615 8 O -0.452 6.452 9 N -0.356 5.356 10 C 0.006 3.994 11 C -0.106 4.106 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.061 4.061 15 N -0.310 5.310 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.196 1.196 28 N -0.111 5.111 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.243 0.757 35 H 0.179 0.821 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.163 0.837 45 H 0.122 0.878 46 H 0.084 0.916 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.346 -20.370 26.757 34.903 hybrid contribution 0.848 0.728 -0.857 1.408 sum 10.194 -19.642 25.901 34.067 Atomic orbital electron populations 1.22066 0.93320 1.04517 1.02495 1.22472 0.96558 0.74824 1.07221 1.46121 1.31511 1.11087 1.17916 1.23502 0.97606 0.94502 0.98625 1.22012 1.05260 0.97814 0.98379 1.21867 1.04728 0.93205 1.01003 1.17186 0.78665 0.85722 0.79892 1.90765 1.47609 1.37239 1.69556 1.45797 1.46822 1.15339 1.27679 1.21357 0.99647 0.85773 0.92606 1.21199 0.95914 0.98490 0.95009 0.90081 1.21694 0.95554 1.01206 1.00821 1.21956 0.95444 0.97832 0.90916 1.60043 1.57102 1.05148 1.08667 1.21531 0.98371 0.94967 0.91913 1.20890 0.85697 0.84878 0.85966 1.90486 1.54767 1.26113 1.79542 1.41948 1.45426 1.14178 1.19585 1.19720 1.27411 1.00029 0.99227 0.90296 1.26047 0.98919 0.94499 1.01837 1.69680 1.44745 1.04223 1.37509 0.84859 0.77868 0.78257 0.77258 1.19788 1.19638 1.19578 1.73394 1.22369 0.98229 1.17087 0.92576 0.92940 0.87915 0.87883 0.83985 0.75674 0.82079 0.75008 0.91280 0.91343 0.92440 0.92819 0.92586 0.90085 0.93855 0.83739 0.87845 0.91585 0.76980 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.01 71.98 0.72 -0.10 16 2 C 0.11 0.34 7.12 86.38 0.61 0.95 16 3 N -0.28 -3.24 3.41 -347.95 -1.19 -4.43 16 4 C 0.00 0.00 11.40 83.54 0.95 0.96 16 5 C -0.21 -3.61 10.81 22.41 0.24 -3.37 16 6 C -0.05 -1.10 7.13 42.45 0.30 -0.79 16 7 C 0.60 15.43 7.82 86.75 0.68 16.11 16 8 O -0.57 -18.38 16.93 -3.95 -0.07 -18.45 16 9 N -0.71 -14.96 5.28 -466.09 -2.46 -17.42 16 10 C 0.13 2.67 5.07 86.38 0.44 3.10 16 11 C -0.09 -1.75 2.57 -10.79 -0.03 -1.78 16 12 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 13 C -0.14 -2.91 8.95 71.98 0.64 -2.26 16 14 C 0.07 1.55 5.07 86.31 0.44 1.99 16 15 N -0.68 -20.98 5.58 -517.91 -2.89 -23.87 16 16 C 0.06 2.22 6.17 85.56 0.53 2.75 16 17 C 0.44 21.04 7.82 87.66 0.69 21.72 16 18 O -0.62 -34.73 15.78 -3.06 -0.05 -34.78 16 19 N -0.57 -29.81 5.29 -306.98 -1.62 -31.44 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 24 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 N -0.27 -5.09 11.35 -48.18 -0.55 -5.64 16 29 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.14 -0.61 8.04 -2.38 -0.02 -0.62 16 34 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 35 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.41 7.70 7.38 -92.71 -0.68 7.01 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.08 7.18 -2.39 -0.02 1.06 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.47 7.75 -2.39 -0.02 1.45 16 42 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.34 11.16 8.43 -89.69 -0.76 10.40 16 45 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 46 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.40 19.55 7.90 -92.70 -0.73 18.82 16 48 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -78.81 408.57 -0.19 -79.01 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -1.18 Total: 40.89 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 7.50 Total: 20.64 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -8.42 Total: -132.63 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.12 Total: -53.23 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -78.81 -0.19 -79.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715259897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.420 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds