Wall clock time and date at job start Tue Mar 31 2020 20:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47151 * 90.00176 * 14 12 10 16 16 H 1.48498 * 109.47184 * 210.00131 * 14 12 10 17 17 H 1.48501 * 109.47470 * 330.00337 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.50706 * 109.46953 * 179.97438 * 22 20 18 24 24 C 1.39870 * 126.03765 * 269.69494 * 23 22 20 25 25 N 1.30839 * 108.20149 * 179.81646 * 24 23 22 26 26 N 1.40084 * 108.20172 * 0.43642 * 25 24 23 27 27 C 1.46506 * 126.03426 * 179.70217 * 26 25 24 28 28 C 1.34943 * 107.92992 * 359.71546 * 26 25 24 29 29 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 30 30 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 31 31 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 40 40 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 41 41 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 42 42 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 43 43 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 44 44 H 1.08000 * 125.89734 * 359.97438 * 24 23 22 45 45 H 1.09003 * 109.46763 * 270.02290 * 27 26 25 46 46 H 1.08996 * 109.47185 * 30.02138 * 27 26 25 47 47 H 1.08996 * 109.47030 * 150.02428 * 27 26 25 48 48 H 1.07994 * 126.13215 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 7.7040 -3.3993 -5.2313 14 14 10.1880 -3.0047 -4.0715 15 1 10.5668 -4.2616 -3.3773 16 1 10.7721 -2.9979 -5.4368 17 1 10.7048 -1.8416 -3.3063 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1328 0.2011 4.1341 24 6 5.5145 0.3867 4.0206 25 7 5.8788 1.2897 4.8945 26 7 4.7402 1.7006 5.5996 27 6 4.7046 2.6954 6.6746 28 6 3.6822 1.0181 5.1142 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 8.2105 -3.8280 -5.9387 39 1 2.4159 -2.7376 0.9716 40 1 1.6238 -2.2853 2.5001 41 1 0.6905 -2.3002 0.9846 42 1 2.4470 -1.0881 3.9073 43 1 3.9004 -1.6025 3.0177 44 1 6.1674 -0.1250 3.3290 45 1 4.8570 2.1999 7.6334 46 1 5.4937 3.4303 6.5158 47 1 3.7364 3.1961 6.6742 48 1 2.6591 1.1073 5.4484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715329941.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:41 Heat of formation + Delta-G solvation = 16.831029 kcal Electronic energy + Delta-G solvation = -29225.895103 eV Core-core repulsion = 25125.152490 eV Total energy + Delta-G solvation = -4100.742613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20531 -39.74426 -38.20524 -36.69219 -34.58434 -33.77782 -33.62490 -32.20362 -31.20467 -31.02130 -28.29484 -27.54542 -26.81054 -25.84502 -24.90617 -23.17463 -21.73133 -21.07574 -20.20546 -19.24538 -18.80112 -17.82217 -17.20387 -16.83237 -16.33739 -15.73478 -15.52438 -15.34444 -15.04132 -14.53431 -14.44459 -14.32500 -13.95130 -13.72383 -13.57353 -13.38317 -13.20602 -13.08423 -12.77820 -12.67801 -12.61093 -12.48230 -12.26342 -12.12213 -11.91471 -11.74491 -11.60677 -11.44225 -11.36805 -10.99788 -10.83228 -10.52482 -10.35658 -10.17389 -9.58459 -9.46020 -9.36008 -8.52349 -8.35548 -8.32246 -7.97508 -7.90183 -6.37445 -3.77837 1.90437 2.52032 2.76415 2.93437 3.21411 3.27565 3.29672 3.36348 3.96791 4.13488 4.35638 4.43943 4.73476 4.77445 4.94159 4.97807 5.02866 5.06187 5.13434 5.16038 5.18509 5.20311 5.25863 5.31116 5.35693 5.50022 5.51351 5.57433 5.62188 5.71133 5.80936 5.84139 5.86775 5.93120 6.02436 6.08009 6.13570 6.31704 6.65900 6.71632 6.99656 7.29233 7.57382 7.59666 7.73293 7.74822 8.11484 8.46141 8.66629 9.22961 9.59548 10.11621 10.80473 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.002835 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.861557 B = 9875.588740 C =12244.272064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.098 0.902 4 C 0.049 3.951 5 N -0.662 5.662 6 C 0.052 3.948 7 C 0.442 3.558 8 O -0.579 6.579 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.597 5.597 19 C 0.079 3.921 20 C 0.522 3.478 21 O -0.537 6.537 22 C -0.057 4.057 23 C -0.215 4.215 24 C 0.071 3.929 25 N -0.300 5.300 26 N -0.382 5.382 27 C 0.105 3.895 28 C 0.062 3.938 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.351 0.649 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.185 0.815 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 4.429 17.266 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.116 0.884 4 C -0.082 4.082 5 N -0.294 5.294 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.462 6.462 9 N -0.203 5.203 10 C -0.426 4.426 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 N -0.330 5.330 19 C -0.064 4.064 20 C 0.311 3.689 21 O -0.413 6.413 22 C -0.098 4.098 23 C -0.227 4.227 24 C -0.116 4.116 25 N -0.121 5.121 26 N -0.164 5.164 27 C -0.037 4.037 28 C -0.084 4.084 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.202 0.798 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.620 5.502 18.652 25.581 hybrid contribution -0.239 -0.293 -1.726 1.767 sum -16.860 5.209 16.926 24.451 Atomic orbital electron populations 1.22086 0.94931 1.02263 1.02374 1.21028 0.93243 0.98037 0.84302 0.88398 1.22346 0.89722 1.00359 0.95780 1.60007 1.03017 1.26920 1.39474 1.21663 0.95266 0.99715 0.91464 1.19831 0.88047 0.84442 0.84996 1.90542 1.71083 1.51513 1.33099 1.41866 1.07373 1.51189 1.19874 1.19702 0.81548 1.34930 1.06458 0.87957 1.25248 1.00625 0.96881 0.95255 1.69613 1.36631 1.38822 1.09462 0.85870 0.82278 0.78883 0.77348 1.20412 1.20989 1.19403 1.47549 1.51172 1.12133 1.22169 1.21735 1.01026 0.82248 1.01374 1.20573 0.77266 0.86894 0.84214 1.90672 1.56654 1.17341 1.76638 1.19910 0.99159 0.97553 0.93181 1.19451 0.94161 1.06236 1.02830 1.23865 0.95028 0.95712 0.96982 1.77376 1.07574 1.16754 1.10363 1.48376 1.05375 1.32964 1.29658 1.21780 1.04032 0.90399 0.87471 1.22136 0.93563 0.95254 0.97435 0.92203 0.91528 0.92159 0.94742 0.90963 0.82950 0.89830 0.94152 0.77544 0.91956 0.91745 0.91471 0.91550 0.89015 0.87828 0.79823 0.91035 0.89430 0.89789 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.17 37.16 0.34 -0.96 16 2 C 0.14 1.58 2.88 -67.93 -0.20 1.38 16 3 H 0.10 1.36 6.90 -51.93 -0.36 1.00 16 4 C 0.05 0.59 4.98 -3.82 -0.02 0.57 16 5 N -0.66 -10.98 5.85 -115.06 -0.67 -11.66 16 6 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 7 C 0.44 10.64 7.82 -10.98 -0.09 10.55 16 8 O -0.58 -16.13 15.78 5.54 0.09 -16.04 16 9 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 10 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 14 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 N -0.60 -6.91 2.49 -173.93 -0.43 -7.34 16 19 C 0.08 0.67 9.40 59.85 0.56 1.24 16 20 C 0.52 7.25 7.67 -10.98 -0.08 7.17 16 21 O -0.54 -9.71 15.36 5.56 0.09 -9.62 16 22 C -0.06 -0.63 4.74 -29.03 -0.14 -0.76 16 23 C -0.21 -2.80 4.59 -105.05 -0.48 -3.29 16 24 C 0.07 1.06 11.96 -17.36 -0.21 0.86 16 25 N -0.30 -4.64 12.58 30.62 0.39 -4.25 16 26 N -0.38 -4.65 4.01 -68.16 -0.27 -4.92 16 27 C 0.10 0.76 11.47 59.85 0.69 1.45 16 28 C 0.06 0.70 11.40 -17.23 -0.20 0.51 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.42 6.66 -51.93 -0.35 0.08 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 34 H 0.35 6.62 8.43 -39.29 -0.33 6.29 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.42 6.44 -51.93 -0.33 0.09 16 41 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 42 H 0.09 0.70 7.40 -51.93 -0.38 0.32 16 43 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 44 H 0.18 2.67 8.06 -52.49 -0.42 2.25 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -37.38 403.68 -6.58 -43.97 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -7.40 Total: 14.66 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -0.09 Total: 11.51 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.33 Total: -67.02 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.17 Total: -25.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.38 -6.58 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715329941.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.800 kcal (2) G-P(sol) polarization free energy of solvation -37.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds