Wall clock time and date at job start Tue Mar 31 2020 20:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47212 * 2 1 4 4 C 1.53010 * 109.46821 * 119.99276 * 2 1 3 5 5 N 1.46903 * 109.46624 * 174.99811 * 4 2 1 6 6 C 1.46906 * 110.99528 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46930 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00085 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99864 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00046 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00136 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99985 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99831 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00369 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46662 * 90.00176 * 14 12 10 16 16 H 1.48497 * 109.47542 * 210.00604 * 14 12 10 17 17 H 1.48503 * 109.46708 * 330.00841 * 14 12 10 18 18 N 1.46494 * 109.47150 * 239.99205 * 2 1 3 19 19 C 1.46493 * 120.00444 * 300.27563 * 18 2 1 20 20 C 1.34784 * 119.99635 * 120.00274 * 18 2 1 21 21 O 1.21279 * 119.99925 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99961 * 180.02562 * 20 18 2 23 23 C 1.50697 * 109.47266 * 180.02562 * 22 20 18 24 24 C 1.39872 * 126.03482 * 269.69346 * 23 22 20 25 25 N 1.30843 * 108.19954 * 179.81986 * 24 23 22 26 26 N 1.40088 * 108.20272 * 0.43057 * 25 24 23 27 27 C 1.46498 * 126.03611 * 179.69824 * 26 25 24 28 28 C 1.34948 * 107.92670 * 359.72727 * 26 25 24 29 29 H 1.08998 * 109.46853 * 60.00323 * 1 2 3 30 30 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47135 * 300.00248 * 1 2 3 32 32 H 1.08990 * 109.47041 * 295.00089 * 4 2 1 33 33 H 1.08999 * 109.46790 * 55.00665 * 4 2 1 34 34 H 1.00904 * 110.99894 * 56.05437 * 5 4 2 35 35 H 1.09005 * 109.47077 * 300.00372 * 6 5 4 36 36 H 1.08999 * 109.47004 * 59.99755 * 6 5 4 37 37 H 0.97002 * 119.99960 * 0.02562 * 9 7 6 38 38 H 0.97001 * 120.00511 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47297 * 269.72722 * 19 18 2 40 40 H 1.09002 * 109.47192 * 29.72648 * 19 18 2 41 41 H 1.08996 * 109.47342 * 149.72358 * 19 18 2 42 42 H 1.09004 * 109.46932 * 300.00223 * 22 20 18 43 43 H 1.08997 * 109.47392 * 59.99562 * 22 20 18 44 44 H 1.07992 * 125.90322 * 359.97438 * 24 23 22 45 45 H 1.08998 * 109.47286 * 270.03094 * 27 26 25 46 46 H 1.09005 * 109.47310 * 30.03132 * 27 26 25 47 47 H 1.08995 * 109.47276 * 150.02844 * 27 26 25 48 48 H 1.07998 * 126.12455 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5157 2.3764 7 6 5.5317 -1.6042 2.2810 8 8 6.1067 -1.1395 1.3195 9 7 6.2354 -2.1999 3.2641 10 6 7.6012 -2.2809 3.1771 11 1 8.1132 -1.8678 2.3206 12 6 8.3266 -2.8954 4.1904 13 7 9.6358 -2.9726 4.1072 14 14 7.4411 -3.6106 5.6715 15 1 7.0910 -5.0284 5.4018 16 1 8.3270 -3.5371 6.8610 17 1 6.2013 -2.8349 5.9290 18 7 2.0184 -0.6907 -1.1960 19 6 1.6595 -2.0915 -1.4308 20 6 2.7933 -0.0358 -2.0832 21 8 3.0859 1.1255 -1.8916 22 6 3.2952 -0.7461 -3.3139 23 6 4.1331 0.2008 -4.1339 24 6 3.6682 1.0407 -5.1512 25 7 4.6869 1.7117 -5.6245 26 7 5.8354 1.3121 -4.9290 27 6 7.1945 1.8124 -5.1498 28 6 5.4688 0.3844 -4.0201 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -0.1581 2.1370 33 1 1.6054 -1.7197 1.2953 34 1 3.9280 0.0827 1.0825 35 1 3.7556 -0.9586 3.2722 36 1 3.6093 -2.5197 2.4298 37 1 5.7754 -2.5719 4.0329 38 1 10.1424 -3.4013 4.8147 39 1 2.4098 -2.7396 -0.9779 40 1 0.6859 -2.2967 -0.9858 41 1 1.6158 -2.2805 -2.5034 42 1 3.9005 -1.6028 -3.0175 43 1 2.4473 -1.0884 -3.9071 44 1 2.6449 1.1232 -5.4862 45 1 7.6922 1.1945 -5.8971 46 1 7.1496 2.8430 -5.5020 47 1 7.7529 1.7721 -4.2147 48 1 6.1243 -0.1211 -3.3264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715329945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:44 Heat of formation + Delta-G solvation = 22.660565 kcal Electronic energy + Delta-G solvation = -29345.971222 eV Core-core repulsion = 25245.481396 eV Total energy + Delta-G solvation = -4100.489826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18881 -39.77177 -38.43829 -36.75896 -34.67862 -33.85462 -33.61335 -32.22635 -31.65273 -31.07828 -28.25407 -27.73892 -26.84663 -25.83095 -24.93741 -23.09974 -21.76688 -21.05167 -20.20955 -19.38981 -18.92203 -18.27532 -17.22692 -16.76959 -16.37507 -15.75818 -15.55911 -15.34100 -15.14030 -14.86688 -14.43449 -14.26070 -14.05422 -13.81021 -13.57219 -13.23743 -13.21759 -13.00979 -12.83141 -12.75201 -12.61342 -12.46391 -12.27191 -12.24028 -12.15319 -12.01193 -11.74534 -11.66608 -11.47982 -11.16266 -10.88398 -10.60578 -10.56238 -9.98462 -9.59929 -9.57326 -9.34947 -8.62913 -8.44473 -8.31776 -8.18945 -8.09024 -6.31720 -3.82975 1.96084 2.55749 2.73190 2.91936 3.01492 3.05609 3.13895 3.24661 3.75067 4.08044 4.11697 4.51062 4.68933 4.86037 4.92999 4.94751 5.02326 5.07413 5.08125 5.11936 5.18507 5.21876 5.23677 5.32735 5.34559 5.41964 5.49069 5.52823 5.54079 5.64103 5.64955 5.81036 5.82158 5.84211 5.90224 5.93774 6.03528 6.16338 6.62185 6.68019 7.04561 7.13502 7.54730 7.57989 7.61304 7.73403 8.14178 8.44434 8.59870 8.94798 9.42267 9.83425 10.81536 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.002979 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.198455 B = 9396.831204 C =11731.117818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.098 0.902 4 C 0.049 3.951 5 N -0.661 5.661 6 C 0.049 3.951 7 C 0.451 3.549 8 O -0.562 6.562 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.598 5.598 19 C 0.080 3.920 20 C 0.522 3.478 21 O -0.536 6.536 22 C -0.056 4.056 23 C -0.223 4.223 24 C 0.060 3.940 25 N -0.305 5.305 26 N -0.377 5.377 27 C 0.102 3.898 28 C 0.078 3.922 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.352 0.648 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.177 0.823 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 1.970 -12.102 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.116 0.884 4 C -0.082 4.082 5 N -0.294 5.294 6 C -0.084 4.084 7 C 0.237 3.763 8 O -0.444 6.444 9 N -0.232 5.232 10 C -0.433 4.433 11 H 0.136 0.864 12 C -0.162 4.162 13 N -0.523 5.523 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.331 5.331 19 C -0.064 4.064 20 C 0.311 3.689 21 O -0.412 6.412 22 C -0.097 4.097 23 C -0.234 4.234 24 C -0.126 4.126 25 N -0.126 5.126 26 N -0.159 5.159 27 C -0.039 4.039 28 C -0.069 4.069 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.172 0.828 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.113 0.887 44 H 0.194 0.806 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.108 0.892 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.971 3.218 -13.826 22.125 hybrid contribution -0.847 -0.764 2.823 3.045 sum -17.818 2.454 -11.003 21.084 Atomic orbital electron populations 1.22091 0.94875 1.02268 1.02466 1.21018 0.93311 0.98036 0.84235 0.88354 1.22358 0.89456 1.00432 0.95951 1.60006 1.03244 1.27017 1.39142 1.21702 0.94963 0.99941 0.91816 1.19725 0.87986 0.83942 0.84687 1.90568 1.71009 1.50260 1.32551 1.42212 1.07840 1.53246 1.19895 1.19420 0.79611 1.35897 1.08348 0.86354 1.25033 0.95434 0.97696 0.98024 1.69620 1.05063 1.43432 1.34144 0.86667 0.79619 0.79985 0.83070 1.19619 1.20224 1.19561 1.47549 1.51175 1.12239 1.22158 1.21730 1.00911 0.82267 1.01466 1.20609 0.77305 0.86895 0.84137 1.90675 1.56758 1.17247 1.76549 1.19888 0.99322 0.97329 0.93137 1.19395 0.93061 1.07081 1.03900 1.23626 0.98300 0.94836 0.95853 1.77272 0.91615 1.23354 1.20406 1.48365 1.07478 1.31762 1.28252 1.21852 0.77772 1.00999 1.03301 1.22403 0.96662 0.93506 0.94301 0.92068 0.92166 0.91553 0.94686 0.90922 0.82830 0.94012 0.89674 0.79746 0.91641 0.91857 0.91557 0.91387 0.88188 0.88725 0.80559 0.90869 0.89495 0.89217 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.17 37.16 0.34 -0.91 16 2 C 0.14 1.51 2.88 -67.93 -0.20 1.31 16 3 H 0.10 1.32 6.90 -51.93 -0.36 0.97 16 4 C 0.05 0.55 4.99 -3.82 -0.02 0.53 16 5 N -0.66 -10.24 5.85 -115.05 -0.67 -10.91 16 6 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 7 C 0.45 10.19 7.82 -10.98 -0.09 10.11 16 8 O -0.56 -15.09 15.78 5.55 0.09 -15.00 16 9 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 10 C -0.30 -8.58 10.16 -14.94 -0.15 -8.74 16 11 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 14 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 N -0.60 -6.69 2.48 -173.94 -0.43 -7.12 16 19 C 0.08 0.64 9.41 59.84 0.56 1.21 16 20 C 0.52 7.13 7.67 -10.98 -0.08 7.05 16 21 O -0.54 -9.59 15.36 5.56 0.09 -9.50 16 22 C -0.06 -0.61 4.74 -29.04 -0.14 -0.75 16 23 C -0.22 -2.91 4.59 -105.06 -0.48 -3.39 16 24 C 0.06 0.78 11.96 -17.36 -0.21 0.57 16 25 N -0.31 -4.42 12.58 30.62 0.39 -4.04 16 26 N -0.38 -4.99 4.01 -68.17 -0.27 -5.26 16 27 C 0.10 0.93 11.47 59.85 0.69 1.62 16 28 C 0.08 1.05 11.40 -17.22 -0.20 0.85 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.40 6.65 -51.93 -0.35 0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 34 H 0.35 6.24 8.43 -39.29 -0.33 5.91 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.42 6.41 -51.93 -0.33 0.09 16 41 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 42 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 43 H 0.09 0.74 7.39 -51.93 -0.38 0.36 16 44 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -37.63 400.55 -6.23 -43.87 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -7.36 Total: 15.17 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -0.10 Total: 11.25 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.27 Total: -66.39 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.17 Total: -24.50 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.63 -6.23 -43.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715329945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.529 kcal (2) G-P(sol) polarization free energy of solvation -37.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds