Wall clock time and date at job start Tue Mar 31 2020 20:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47212 * 2 1 4 4 C 1.53010 * 109.46821 * 119.99276 * 2 1 3 5 5 N 1.46903 * 109.46624 * 174.99811 * 4 2 1 6 6 C 1.46906 * 110.99528 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46930 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00085 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99864 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00046 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00136 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99985 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99831 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00369 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46662 * 90.00176 * 14 12 10 16 16 H 1.48497 * 109.47542 * 210.00604 * 14 12 10 17 17 H 1.48503 * 109.46708 * 330.00841 * 14 12 10 18 18 N 1.46494 * 109.47150 * 239.99205 * 2 1 3 19 19 C 1.46493 * 120.00444 * 300.27563 * 18 2 1 20 20 C 1.34784 * 119.99635 * 120.00274 * 18 2 1 21 21 O 1.21279 * 119.99925 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99961 * 180.02562 * 20 18 2 23 23 C 1.50697 * 109.47266 * 180.02562 * 22 20 18 24 24 C 1.39872 * 126.03482 * 269.69346 * 23 22 20 25 25 N 1.30843 * 108.19954 * 179.81986 * 24 23 22 26 26 N 1.40088 * 108.20272 * 0.43057 * 25 24 23 27 27 C 1.46498 * 126.03611 * 179.69824 * 26 25 24 28 28 C 1.34948 * 107.92670 * 359.72727 * 26 25 24 29 29 H 1.08998 * 109.46853 * 60.00323 * 1 2 3 30 30 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47135 * 300.00248 * 1 2 3 32 32 H 1.08990 * 109.47041 * 295.00089 * 4 2 1 33 33 H 1.08999 * 109.46790 * 55.00665 * 4 2 1 34 34 H 1.00904 * 110.99894 * 56.05437 * 5 4 2 35 35 H 1.09005 * 109.47077 * 300.00372 * 6 5 4 36 36 H 1.08999 * 109.47004 * 59.99755 * 6 5 4 37 37 H 0.97002 * 119.99960 * 0.02562 * 9 7 6 38 38 H 0.97001 * 120.00511 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47297 * 269.72722 * 19 18 2 40 40 H 1.09002 * 109.47192 * 29.72648 * 19 18 2 41 41 H 1.08996 * 109.47342 * 149.72358 * 19 18 2 42 42 H 1.09004 * 109.46932 * 300.00223 * 22 20 18 43 43 H 1.08997 * 109.47392 * 59.99562 * 22 20 18 44 44 H 1.07992 * 125.90322 * 359.97438 * 24 23 22 45 45 H 1.08998 * 109.47286 * 270.03094 * 27 26 25 46 46 H 1.09005 * 109.47310 * 30.03132 * 27 26 25 47 47 H 1.08995 * 109.47276 * 150.02844 * 27 26 25 48 48 H 1.07998 * 126.12455 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5157 2.3764 7 6 5.5317 -1.6042 2.2810 8 8 6.1067 -1.1395 1.3195 9 7 6.2354 -2.1999 3.2641 10 6 7.6012 -2.2809 3.1771 11 1 8.1132 -1.8678 2.3206 12 6 8.3266 -2.8954 4.1904 13 7 9.6358 -2.9726 4.1072 14 14 7.4411 -3.6106 5.6715 15 1 7.0910 -5.0284 5.4018 16 1 8.3270 -3.5371 6.8610 17 1 6.2013 -2.8349 5.9290 18 7 2.0184 -0.6907 -1.1960 19 6 1.6595 -2.0915 -1.4308 20 6 2.7933 -0.0358 -2.0832 21 8 3.0859 1.1255 -1.8916 22 6 3.2952 -0.7461 -3.3139 23 6 4.1331 0.2008 -4.1339 24 6 3.6682 1.0407 -5.1512 25 7 4.6869 1.7117 -5.6245 26 7 5.8354 1.3121 -4.9290 27 6 7.1945 1.8124 -5.1498 28 6 5.4688 0.3844 -4.0201 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -0.1581 2.1370 33 1 1.6054 -1.7197 1.2953 34 1 3.9280 0.0827 1.0825 35 1 3.7556 -0.9586 3.2722 36 1 3.6093 -2.5197 2.4298 37 1 5.7754 -2.5719 4.0329 38 1 10.1424 -3.4013 4.8147 39 1 2.4098 -2.7396 -0.9779 40 1 0.6859 -2.2967 -0.9858 41 1 1.6158 -2.2805 -2.5034 42 1 3.9005 -1.6028 -3.0175 43 1 2.4473 -1.0884 -3.9071 44 1 2.6449 1.1232 -5.4862 45 1 7.6922 1.1945 -5.8971 46 1 7.1496 2.8430 -5.5020 47 1 7.7529 1.7721 -4.2147 48 1 6.1243 -0.1211 -3.3264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715329945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:43 Heat of formation + Delta-G solvation = -7.348203 kcal Electronic energy + Delta-G solvation = -29347.272500 eV Core-core repulsion = 25245.481396 eV Total energy + Delta-G solvation = -4101.791103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16679 -40.75963 -40.22110 -37.83680 -36.15197 -35.50892 -34.55868 -33.74722 -33.15178 -32.00257 -29.18589 -29.02918 -27.59303 -26.76185 -26.49175 -24.43573 -22.69896 -22.02638 -21.33822 -21.09707 -20.29692 -19.75064 -18.18166 -17.86686 -17.67205 -17.15041 -16.74076 -16.45788 -16.38890 -16.13784 -15.67496 -15.35044 -15.27748 -15.01802 -14.79602 -14.58591 -14.34938 -14.15033 -14.00753 -13.89052 -13.71994 -13.46232 -13.33161 -13.15783 -13.08671 -12.96483 -12.83436 -12.74664 -12.58339 -12.42550 -12.38796 -11.98088 -11.69307 -11.56244 -11.50975 -10.67284 -10.43561 -10.35305 -10.24507 -9.41874 -9.31039 -9.23944 -8.41305 -6.02199 0.94427 1.30106 1.35758 1.44618 1.66425 1.77213 1.91911 1.96845 2.23122 2.38916 2.75216 3.15062 3.42228 3.64503 3.82560 3.98664 4.06878 4.15537 4.25827 4.28743 4.35221 4.38903 4.40461 4.44645 4.47962 4.51587 4.56493 4.62618 4.69754 4.75686 4.77280 4.88428 4.89860 4.93480 5.14216 5.19062 5.22207 5.35878 5.52848 5.72831 5.81006 5.91241 6.08520 6.10100 6.31637 6.60255 6.65383 6.73356 6.88572 7.40264 7.47123 7.97718 8.76489 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.002979 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.198455 B = 9396.831204 C =11731.117818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.064 0.936 4 C 0.053 3.947 5 N -0.677 5.677 6 C 0.064 3.936 7 C 0.448 3.552 8 O -0.614 6.614 9 N -0.591 5.591 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.016 4.016 13 N -0.936 5.936 14 Si 0.966 3.034 15 H -0.255 1.255 16 H -0.277 1.277 17 H -0.232 1.232 18 N -0.594 5.594 19 C 0.074 3.926 20 C 0.513 3.487 21 O -0.591 6.591 22 C -0.050 4.050 23 C -0.231 4.231 24 C 0.054 3.946 25 N -0.333 5.333 26 N -0.384 5.384 27 C 0.094 3.906 28 C 0.056 3.944 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.333 0.667 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.204 0.796 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.323 -0.076 -10.349 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.082 0.918 4 C -0.077 4.077 5 N -0.309 5.309 6 C -0.068 4.068 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.214 4.214 13 N -0.576 5.576 14 Si 0.786 3.214 15 H -0.179 1.179 16 H -0.202 1.202 17 H -0.155 1.155 18 N -0.326 5.326 19 C -0.068 4.068 20 C 0.302 3.698 21 O -0.471 6.471 22 C -0.090 4.090 23 C -0.242 4.242 24 C -0.131 4.131 25 N -0.155 5.155 26 N -0.166 5.166 27 C -0.046 4.046 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.149 0.851 44 H 0.220 0.780 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.047 1.135 -12.068 24.288 hybrid contribution 0.462 -0.076 2.182 2.232 sum -20.585 1.058 -9.886 22.860 Atomic orbital electron populations 1.22006 0.91957 1.03762 1.02842 1.21066 0.95394 0.96284 0.84188 0.91783 1.22464 0.86575 1.02031 0.96585 1.60037 1.05744 1.25977 1.39108 1.21635 0.89457 1.02396 0.93353 1.21039 0.90821 0.81454 0.83086 1.90553 1.72943 1.51772 1.34529 1.42028 1.06097 1.54042 1.21161 1.18991 0.81999 1.37408 1.07361 0.92885 1.26127 0.96188 0.97304 1.01797 1.69807 1.07518 1.44438 1.35861 0.85347 0.79364 0.79812 0.76865 1.17917 1.20186 1.15508 1.47680 1.50010 1.13373 1.21509 1.21966 1.01706 0.79843 1.03299 1.21101 0.77119 0.86450 0.85103 1.90650 1.58950 1.19651 1.77885 1.19946 1.00285 0.96497 0.92280 1.19737 0.93112 1.07390 1.03996 1.24104 0.99201 0.94224 0.95571 1.77197 0.92452 1.24381 1.21513 1.48688 1.08325 1.31633 1.27986 1.22117 0.76472 1.01683 1.04359 1.22639 0.97455 0.94196 0.94820 0.92608 0.89977 0.90372 0.93086 0.88518 0.84923 0.91093 0.86309 0.77478 0.91169 0.93050 0.88956 0.89159 0.87726 0.85094 0.77982 0.89022 0.88878 0.88488 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.17 71.98 0.66 -1.18 16 2 C 0.13 2.71 2.88 45.00 0.13 2.84 16 3 H 0.06 1.76 6.90 -2.39 -0.02 1.74 16 4 C 0.05 1.02 4.99 86.31 0.43 1.45 16 5 N -0.68 -19.95 5.85 -517.90 -3.03 -22.98 16 6 C 0.06 1.90 6.17 85.56 0.53 2.43 16 7 C 0.45 20.19 7.82 87.66 0.69 20.88 16 8 O -0.61 -34.42 15.78 -3.07 -0.05 -34.47 16 9 N -0.59 -27.74 5.09 -306.98 -1.56 -29.30 16 10 C -0.33 -19.27 10.16 84.04 0.85 -18.41 16 11 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 12 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 13 N -0.94 -56.42 13.96 21.66 0.30 -56.11 16 14 Si 0.97 38.41 27.74 68.60 1.90 40.32 16 15 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 16 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 17 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 18 N -0.59 -12.33 2.48 -822.59 -2.04 -14.37 16 19 C 0.07 0.95 9.41 127.77 1.20 2.15 16 20 C 0.51 13.96 7.67 87.66 0.67 14.63 16 21 O -0.59 -22.07 15.36 -3.03 -0.05 -22.12 16 22 C -0.05 -1.04 4.74 29.10 0.14 -0.90 16 23 C -0.23 -6.12 4.59 -20.15 -0.09 -6.21 16 24 C 0.05 1.42 11.96 85.24 1.02 2.44 16 25 N -0.33 -9.89 12.58 -57.02 -0.72 -10.61 16 26 N -0.38 -10.60 4.01 -369.58 -1.48 -12.08 16 27 C 0.09 1.79 11.47 127.77 1.47 3.25 16 28 C 0.06 1.59 11.40 83.54 0.95 2.54 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.68 6.65 -2.39 -0.02 0.67 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.45 7.84 -2.39 -0.02 1.43 16 34 H 0.33 11.99 8.43 -89.69 -0.76 11.23 16 35 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.39 14.99 5.76 -92.71 -0.53 14.46 16 38 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.73 6.41 -2.39 -0.02 0.71 16 41 H 0.09 0.77 6.44 -2.39 -0.02 0.75 16 42 H 0.10 2.10 8.11 -2.38 -0.02 2.08 16 43 H 0.13 1.72 7.39 -2.39 -0.02 1.70 16 44 H 0.20 3.82 8.06 -2.91 -0.02 3.79 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.18 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -90.51 400.55 2.03 -88.48 By element: Atomic # 1 Polarization: 48.10 SS G_CDS: -0.36 Total: 47.74 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 9.11 Total: 25.51 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -8.53 Total: -145.46 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -0.09 Total: -56.58 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.32 kcal Total: -90.51 2.03 -88.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715329945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.134 kcal (2) G-P(sol) polarization free energy of solvation -90.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds