Wall clock time and date at job start Tue Mar 31 2020 20:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46905 * 109.47028 * 184.99640 * 4 2 1 6 6 C 1.46897 * 111.00138 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46808 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00632 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99593 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00488 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00434 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99773 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47287 * 90.00145 * 14 12 10 16 16 H 1.48500 * 109.46907 * 210.00357 * 14 12 10 17 17 H 1.48503 * 109.47237 * 330.00048 * 14 12 10 18 18 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 19 19 C 1.46499 * 120.00401 * 59.99673 * 18 2 1 20 20 C 1.34779 * 119.99763 * 239.99831 * 18 2 1 21 21 O 1.21282 * 120.00170 * 0.02562 * 20 18 2 22 22 C 1.50701 * 120.00024 * 179.97438 * 20 18 2 23 23 C 1.50702 * 109.46981 * 180.02562 * 22 20 18 24 24 C 1.39871 * 125.89631 * 124.72069 * 23 22 20 25 25 C 1.35322 * 107.91533 * 179.86300 * 24 23 22 26 26 N 1.34941 * 107.74687 * 0.39030 * 25 24 23 27 27 C 1.46495 * 126.03664 * 179.75188 * 26 25 24 28 28 N 1.30829 * 125.89941 * 305.02345 * 23 22 20 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.00906 * 110.99658 * 56.04875 * 5 4 2 35 35 H 1.08996 * 109.47257 * 300.00577 * 6 5 4 36 36 H 1.09004 * 109.46984 * 60.00897 * 6 5 4 37 37 H 0.96999 * 120.00267 * 359.97438 * 9 7 6 38 38 H 0.96999 * 120.00291 * 179.97438 * 13 12 10 39 39 H 1.08993 * 109.47066 * 89.99858 * 19 18 2 40 40 H 1.09004 * 109.47229 * 210.00249 * 19 18 2 41 41 H 1.09000 * 109.47083 * 330.00074 * 19 18 2 42 42 H 1.09004 * 109.47134 * 299.99971 * 22 20 18 43 43 H 1.09001 * 109.46597 * 60.00090 * 22 20 18 44 44 H 1.08001 * 126.03783 * 359.97438 * 24 23 22 45 45 H 1.07998 * 126.12400 * 180.14521 * 25 24 23 46 46 H 1.09000 * 109.47576 * 269.97346 * 27 26 25 47 47 H 1.09000 * 109.47161 * 29.97999 * 27 26 25 48 48 H 1.09005 * 109.47203 * 149.97650 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6054 -2.2803 8 8 6.1065 -1.1412 -1.3186 9 7 6.2352 -2.2014 -3.2633 10 6 7.6009 -2.2833 -3.1757 11 1 8.1129 -1.8699 -2.3193 12 6 8.3265 -2.8981 -4.1887 13 7 9.6355 -2.9762 -4.1052 14 14 7.4408 -3.6138 -5.6697 15 1 7.3217 -2.5755 -6.7246 16 1 8.2112 -4.7688 -6.1966 17 1 6.0855 -4.0661 -5.2650 18 7 2.0184 -0.6907 1.1961 19 6 1.6645 -2.0932 1.4280 20 6 2.7933 -0.0357 2.0833 21 8 3.0859 1.1256 1.8916 22 6 3.2953 -0.7459 3.3140 23 6 4.1321 0.2015 4.1345 24 6 3.9282 0.5198 5.4812 25 6 4.8878 1.3993 5.8509 26 7 5.6659 1.6359 4.7741 27 6 6.8232 2.5329 4.7274 28 7 5.1714 0.8724 3.7088 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1584 -2.1370 34 1 3.7996 -1.2884 -0.3434 35 1 3.6093 -2.5200 -2.4295 36 1 3.7557 -0.9588 -3.2721 37 1 5.7754 -2.5730 -4.0322 38 1 10.1419 -3.4058 -4.8122 39 1 2.4157 -2.7377 0.9716 40 1 1.6239 -2.2853 2.5002 41 1 0.6905 -2.3003 0.9847 42 1 2.4472 -1.0881 3.9073 43 1 3.9006 -1.6025 3.0176 44 1 3.1445 0.1308 6.1144 45 1 5.0070 1.8368 6.8311 46 1 6.4965 3.5331 4.4428 47 1 7.2938 2.5702 5.7099 48 1 7.5404 2.1628 3.9948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715331929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:31 Heat of formation + Delta-G solvation = 27.197345 kcal Electronic energy + Delta-G solvation = -29372.622763 eV Core-core repulsion = 25272.329666 eV Total energy + Delta-G solvation = -4100.293096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19957 -39.92286 -38.37937 -36.83411 -34.60727 -33.91764 -33.73073 -32.04056 -31.57675 -30.29621 -29.47020 -27.69578 -26.99637 -25.86085 -24.90488 -23.07584 -21.90534 -21.14903 -19.89671 -19.29540 -18.78851 -18.26612 -17.30814 -16.91192 -16.33816 -16.06472 -15.66107 -15.35846 -15.18676 -14.82079 -14.37737 -14.23059 -14.00663 -13.81031 -13.57961 -13.28825 -13.20303 -13.04792 -12.91708 -12.69956 -12.62457 -12.50795 -12.30231 -12.23338 -12.19893 -11.96864 -11.79093 -11.68932 -11.45003 -11.13378 -10.91636 -10.55771 -10.45839 -9.92457 -9.64999 -9.51477 -9.18348 -8.72402 -8.54613 -8.45383 -8.12670 -8.01981 -6.25729 -3.76716 1.95081 2.53621 2.67824 2.79500 3.05407 3.10277 3.11146 3.17712 3.81588 4.12464 4.15746 4.40313 4.59891 4.69886 4.83764 4.87123 4.92096 4.94135 5.08032 5.11876 5.13871 5.17634 5.27550 5.31553 5.39274 5.40625 5.41010 5.47019 5.58443 5.60064 5.63054 5.70569 5.77097 5.85935 5.92035 5.98247 6.00091 6.11989 6.54259 6.63513 7.02679 7.19589 7.38688 7.64142 7.68421 7.81852 8.21022 8.33139 8.66352 9.01368 9.48510 9.90443 10.87682 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.002955 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.962948 B = 9472.056321 C =11648.014018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.110 0.890 4 C 0.051 3.949 5 N -0.663 5.663 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.558 6.558 9 N -0.593 5.593 10 C -0.303 4.303 11 H 0.119 0.881 12 C 0.040 3.960 13 N -0.883 5.883 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.616 5.616 19 C 0.072 3.928 20 C 0.521 3.479 21 O -0.510 6.510 22 C -0.057 4.057 23 C 0.077 3.923 24 C -0.269 4.269 25 C 0.046 3.954 26 N -0.376 5.376 27 C 0.101 3.899 28 N -0.248 5.248 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.350 0.650 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.370 0.630 38 H 0.272 0.728 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.145 0.855 45 H 0.171 0.829 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.835 3.037 16.382 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.128 0.872 4 C -0.080 4.080 5 N -0.296 5.296 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.439 6.439 9 N -0.233 5.233 10 C -0.431 4.431 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.524 5.524 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.196 1.196 18 N -0.352 5.352 19 C -0.071 4.071 20 C 0.308 3.692 21 O -0.383 6.383 22 C -0.098 4.098 23 C -0.091 4.091 24 C -0.299 4.299 25 C -0.100 4.100 26 N -0.158 5.158 27 C -0.040 4.040 28 N -0.070 5.070 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.170 0.830 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.202 0.798 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.163 0.837 45 H 0.188 0.812 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.037 4.925 15.611 24.358 hybrid contribution -1.274 -1.851 -0.432 2.288 sum -19.311 3.074 15.179 24.754 Atomic orbital electron populations 1.22100 0.94876 1.02099 1.02606 1.21117 0.93123 0.99025 0.83226 0.87250 1.22330 0.88908 0.98698 0.98038 1.59978 1.07627 1.57257 1.04712 1.21713 0.94851 0.96895 0.95002 1.19748 0.88067 0.83689 0.84957 1.90601 1.70943 1.49647 1.32714 1.42205 1.07825 1.53227 1.20072 1.19440 0.79591 1.35720 1.08391 0.86335 1.25029 0.95431 0.97774 0.97998 1.69622 1.05063 1.43660 1.34038 0.86665 0.79510 0.79738 0.83408 1.19645 1.20263 1.19573 1.47825 1.51938 1.12280 1.23146 1.21810 1.01193 0.81961 1.02141 1.20309 0.77808 0.87160 0.83928 1.90747 1.55262 1.16758 1.75570 1.20048 0.98875 0.97161 0.93744 1.21528 0.95599 0.98430 0.93503 1.21277 1.05070 1.07515 0.96006 1.22452 0.93810 1.00139 0.93611 1.48605 1.24478 1.35237 1.07482 1.21856 0.85767 0.92433 1.03968 1.77641 1.13017 1.07851 1.08454 0.92093 0.91290 0.92390 0.95441 0.90114 0.82969 0.94056 0.89519 0.79775 0.91698 0.92641 0.90816 0.90895 0.87334 0.87184 0.83748 0.81218 0.90771 0.89680 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.17 37.16 0.34 -0.97 16 2 C 0.14 1.63 2.95 -67.93 -0.20 1.43 16 3 H 0.11 1.65 6.90 -51.93 -0.36 1.29 16 4 C 0.05 0.62 5.03 -3.82 -0.02 0.60 16 5 N -0.66 -11.37 6.12 -115.06 -0.70 -12.07 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.45 10.81 7.82 -10.98 -0.09 10.72 16 8 O -0.56 -16.04 15.78 5.55 0.09 -15.95 16 9 N -0.59 -14.71 5.09 -10.96 -0.06 -14.76 16 10 C -0.30 -8.86 10.16 -14.93 -0.15 -9.01 16 11 H 0.12 3.98 7.39 -52.49 -0.39 3.59 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.43 13.96 55.50 0.77 -25.66 16 14 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 18 N -0.62 -7.09 1.83 -173.93 -0.32 -7.41 16 19 C 0.07 0.55 9.38 59.85 0.56 1.12 16 20 C 0.52 7.57 7.66 -10.98 -0.08 7.49 16 21 O -0.51 -9.87 14.89 5.56 0.08 -9.79 16 22 C -0.06 -0.66 4.83 -29.03 -0.14 -0.80 16 23 C 0.08 1.12 6.02 -82.41 -0.50 0.62 16 24 C -0.27 -3.10 10.72 -40.01 -0.43 -3.53 16 25 C 0.05 0.49 11.49 -17.22 -0.20 0.29 16 26 N -0.38 -5.06 4.01 -68.16 -0.27 -5.33 16 27 C 0.10 0.96 11.47 59.84 0.69 1.64 16 28 N -0.25 -4.33 11.92 33.67 0.40 -3.93 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.39 6.66 -51.93 -0.35 0.05 16 32 H 0.03 0.29 7.84 -51.93 -0.41 -0.12 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.35 6.42 7.54 -39.29 -0.30 6.12 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.37 8.01 5.76 -40.82 -0.24 7.77 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 40 H 0.07 0.40 6.44 -51.93 -0.33 0.06 16 41 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 42 H 0.11 0.81 7.38 -51.93 -0.38 0.43 16 43 H 0.11 1.21 8.11 -51.93 -0.42 0.79 16 44 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -41.15 398.58 -6.38 -47.52 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.32 Total: 14.80 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -0.34 Total: 11.46 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.18 Total: -69.17 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: 0.17 Total: -25.74 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -41.15 -6.38 -47.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715331929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.722 kcal (2) G-P(sol) polarization free energy of solvation -41.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds