Wall clock time and date at job start Tue Mar 31 2020 20:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46905 * 109.47028 * 184.99640 * 4 2 1 6 6 C 1.46897 * 111.00138 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46808 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00632 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99593 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00488 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00434 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99773 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47287 * 90.00145 * 14 12 10 16 16 H 1.48500 * 109.46907 * 210.00357 * 14 12 10 17 17 H 1.48503 * 109.47237 * 330.00048 * 14 12 10 18 18 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 19 19 C 1.46499 * 120.00401 * 59.99673 * 18 2 1 20 20 C 1.34779 * 119.99763 * 239.99831 * 18 2 1 21 21 O 1.21282 * 120.00170 * 0.02562 * 20 18 2 22 22 C 1.50701 * 120.00024 * 179.97438 * 20 18 2 23 23 C 1.50702 * 109.46981 * 180.02562 * 22 20 18 24 24 C 1.39871 * 125.89631 * 124.72069 * 23 22 20 25 25 C 1.35322 * 107.91533 * 179.86300 * 24 23 22 26 26 N 1.34941 * 107.74687 * 0.39030 * 25 24 23 27 27 C 1.46495 * 126.03664 * 179.75188 * 26 25 24 28 28 N 1.30829 * 125.89941 * 305.02345 * 23 22 20 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.00906 * 110.99658 * 56.04875 * 5 4 2 35 35 H 1.08996 * 109.47257 * 300.00577 * 6 5 4 36 36 H 1.09004 * 109.46984 * 60.00897 * 6 5 4 37 37 H 0.96999 * 120.00267 * 359.97438 * 9 7 6 38 38 H 0.96999 * 120.00291 * 179.97438 * 13 12 10 39 39 H 1.08993 * 109.47066 * 89.99858 * 19 18 2 40 40 H 1.09004 * 109.47229 * 210.00249 * 19 18 2 41 41 H 1.09000 * 109.47083 * 330.00074 * 19 18 2 42 42 H 1.09004 * 109.47134 * 299.99971 * 22 20 18 43 43 H 1.09001 * 109.46597 * 60.00090 * 22 20 18 44 44 H 1.08001 * 126.03783 * 359.97438 * 24 23 22 45 45 H 1.07998 * 126.12400 * 180.14521 * 25 24 23 46 46 H 1.09000 * 109.47576 * 269.97346 * 27 26 25 47 47 H 1.09000 * 109.47161 * 29.97999 * 27 26 25 48 48 H 1.09005 * 109.47203 * 149.97650 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6054 -2.2803 8 8 6.1065 -1.1412 -1.3186 9 7 6.2352 -2.2014 -3.2633 10 6 7.6009 -2.2833 -3.1757 11 1 8.1129 -1.8699 -2.3193 12 6 8.3265 -2.8981 -4.1887 13 7 9.6355 -2.9762 -4.1052 14 14 7.4408 -3.6138 -5.6697 15 1 7.3217 -2.5755 -6.7246 16 1 8.2112 -4.7688 -6.1966 17 1 6.0855 -4.0661 -5.2650 18 7 2.0184 -0.6907 1.1961 19 6 1.6645 -2.0932 1.4280 20 6 2.7933 -0.0357 2.0833 21 8 3.0859 1.1256 1.8916 22 6 3.2953 -0.7459 3.3140 23 6 4.1321 0.2015 4.1345 24 6 3.9282 0.5198 5.4812 25 6 4.8878 1.3993 5.8509 26 7 5.6659 1.6359 4.7741 27 6 6.8232 2.5329 4.7274 28 7 5.1714 0.8724 3.7088 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1584 -2.1370 34 1 3.7996 -1.2884 -0.3434 35 1 3.6093 -2.5200 -2.4295 36 1 3.7557 -0.9588 -3.2721 37 1 5.7754 -2.5730 -4.0322 38 1 10.1419 -3.4058 -4.8122 39 1 2.4157 -2.7377 0.9716 40 1 1.6239 -2.2853 2.5002 41 1 0.6905 -2.3003 0.9847 42 1 2.4472 -1.0881 3.9073 43 1 3.9006 -1.6025 3.0176 44 1 3.1445 0.1308 6.1144 45 1 5.0070 1.8368 6.8311 46 1 6.4965 3.5331 4.4428 47 1 7.2938 2.5702 5.7099 48 1 7.5404 2.1628 3.9948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715331929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:30 Heat of formation + Delta-G solvation = -7.033541 kcal Electronic energy + Delta-G solvation = -29374.107125 eV Core-core repulsion = 25272.329666 eV Total energy + Delta-G solvation = -4101.777459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12507 -40.94031 -40.26942 -37.97849 -36.18199 -35.52943 -34.80518 -33.77992 -32.95892 -31.15962 -30.40766 -29.11325 -27.73475 -26.76151 -26.52583 -24.50478 -22.88466 -22.01239 -21.34905 -20.82470 -20.27133 -19.70298 -18.30144 -17.94458 -17.72555 -17.25191 -16.94481 -16.62730 -16.48492 -16.16747 -15.71315 -15.46205 -15.22579 -15.03933 -14.65289 -14.58234 -14.30033 -14.27575 -14.08867 -13.97178 -13.74540 -13.51124 -13.29734 -13.20621 -13.05337 -13.02160 -12.92759 -12.81534 -12.76246 -12.44102 -12.40817 -11.98627 -11.81208 -11.54259 -11.42777 -10.74727 -10.48864 -10.27622 -10.19479 -9.60528 -9.43849 -9.26494 -8.43421 -6.05074 1.04803 1.28137 1.34841 1.43626 1.71438 1.74243 1.79726 1.92976 2.21699 2.23526 2.71533 3.12322 3.37045 3.54948 3.77776 3.90072 4.00232 4.12248 4.15718 4.23336 4.29424 4.34530 4.37441 4.39449 4.41940 4.51971 4.52391 4.63212 4.70564 4.71605 4.72886 4.82684 4.86522 4.91362 4.99774 5.14068 5.18590 5.32551 5.50597 5.68598 5.74110 5.88572 6.07140 6.25036 6.33937 6.47468 6.57851 6.85666 6.87746 7.32266 7.36731 7.95131 8.74707 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.002955 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.962948 B = 9472.056321 C =11648.014018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.136 3.864 3 H 0.064 0.936 4 C 0.055 3.945 5 N -0.693 5.693 6 C 0.064 3.936 7 C 0.444 3.556 8 O -0.617 6.617 9 N -0.589 5.589 10 C -0.332 4.332 11 H 0.049 0.951 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.228 1.228 18 N -0.610 5.610 19 C 0.064 3.936 20 C 0.511 3.489 21 O -0.573 6.573 22 C -0.054 4.054 23 C 0.060 3.940 24 C -0.280 4.280 25 C 0.053 3.947 26 N -0.390 5.390 27 C 0.094 3.906 28 N -0.330 5.330 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.338 0.662 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.391 0.609 38 H 0.280 0.720 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.154 0.846 43 H 0.111 0.889 44 H 0.178 0.822 45 H 0.217 0.783 46 H 0.078 0.922 47 H 0.127 0.873 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.146 0.880 15.786 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.083 0.917 4 C -0.075 4.075 5 N -0.326 5.326 6 C -0.068 4.068 7 C 0.232 3.768 8 O -0.502 6.502 9 N -0.231 5.231 10 C -0.461 4.461 11 H 0.067 0.933 12 C -0.214 4.214 13 N -0.576 5.576 14 Si 0.789 3.211 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.152 1.152 18 N -0.344 5.344 19 C -0.078 4.078 20 C 0.299 3.701 21 O -0.452 6.452 22 C -0.095 4.095 23 C -0.107 4.107 24 C -0.309 4.309 25 C -0.092 4.092 26 N -0.173 5.173 27 C -0.046 4.046 28 N -0.153 5.153 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.227 0.773 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.172 0.828 43 H 0.129 0.871 44 H 0.195 0.805 45 H 0.234 0.766 46 H 0.096 0.904 47 H 0.145 0.855 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.407 2.729 14.998 27.101 hybrid contribution 0.154 -1.108 -0.124 1.125 sum -22.253 1.621 14.874 26.816 Atomic orbital electron populations 1.22003 0.91534 1.03828 1.02995 1.21111 0.95495 0.96789 0.83407 0.91734 1.22438 0.85832 1.00583 0.98615 1.59959 1.10962 1.57671 1.03996 1.21640 0.89172 0.99746 0.96257 1.21107 0.91013 0.81292 0.83355 1.90584 1.73015 1.51566 1.35000 1.41997 1.06079 1.53776 1.21230 1.18991 0.82010 1.37638 1.07466 0.93288 1.26180 0.96227 0.97195 1.01840 1.69812 1.07593 1.44351 1.35836 0.85307 0.79738 0.78803 0.77263 1.18211 1.19755 1.15163 1.47925 1.50631 1.13649 1.22180 1.22124 1.02200 0.79166 1.04276 1.20881 0.77505 0.86675 0.85006 1.90713 1.57749 1.19575 1.77133 1.20207 1.00022 0.96225 0.93024 1.22128 0.95093 0.98265 0.95194 1.21740 1.06254 1.07782 0.95108 1.23272 0.92457 0.99051 0.94446 1.48907 1.25482 1.35394 1.07510 1.22093 0.84808 0.91849 1.05843 1.77535 1.15555 1.10672 1.11540 0.92578 0.90139 0.89819 0.92173 0.88899 0.84265 0.90053 0.86768 0.77341 0.91064 0.93242 0.88282 0.88193 0.82817 0.87077 0.80482 0.76605 0.90383 0.85469 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.17 71.98 0.66 -1.33 16 2 C 0.14 3.08 2.95 44.99 0.13 3.21 16 3 H 0.06 2.06 6.90 -2.39 -0.02 2.05 16 4 C 0.05 1.20 5.03 86.30 0.43 1.64 16 5 N -0.69 -23.36 6.12 -517.94 -3.17 -26.53 16 6 C 0.06 2.11 6.17 85.56 0.53 2.64 16 7 C 0.44 21.69 7.82 87.66 0.69 22.37 16 8 O -0.62 -37.79 15.78 -3.05 -0.05 -37.84 16 9 N -0.59 -29.23 5.09 -306.98 -1.56 -30.79 16 10 C -0.33 -20.39 10.16 84.04 0.85 -19.53 16 11 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 12 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 13 N -0.94 -58.07 13.96 21.66 0.30 -57.77 16 14 Si 0.97 39.68 27.74 68.60 1.90 41.58 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 18 N -0.61 -13.59 1.83 -822.58 -1.51 -15.10 16 19 C 0.06 0.80 9.38 127.77 1.20 2.00 16 20 C 0.51 15.45 7.66 87.66 0.67 16.12 16 21 O -0.57 -24.08 14.89 -3.04 -0.05 -24.12 16 22 C -0.05 -1.26 4.83 29.10 0.14 -1.12 16 23 C 0.06 1.80 6.02 43.10 0.26 2.06 16 24 C -0.28 -6.19 10.72 21.99 0.24 -5.95 16 25 C 0.05 1.09 11.49 83.54 0.96 2.05 16 26 N -0.39 -10.97 4.01 -369.57 -1.48 -12.45 16 27 C 0.09 1.90 11.47 127.77 1.47 3.36 16 28 N -0.33 -12.47 11.92 -47.39 -0.56 -13.03 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.74 6.66 -2.39 -0.02 0.72 16 32 H 0.06 0.97 7.84 -2.39 -0.02 0.96 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.34 12.62 7.54 -89.69 -0.68 11.94 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 37 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 38 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 40 H 0.10 0.73 6.44 -2.39 -0.02 0.71 16 41 H 0.10 0.72 6.43 -2.39 -0.02 0.71 16 42 H 0.15 1.97 7.38 -2.39 -0.02 1.95 16 43 H 0.11 2.52 8.11 -2.39 -0.02 2.50 16 44 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.22 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -104.06 398.58 2.24 -101.82 By element: Atomic # 1 Polarization: 47.45 SS G_CDS: -0.28 Total: 47.17 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 8.69 Total: 27.06 kcal Atomic # 7 Polarization: -147.69 SS G_CDS: -7.99 Total: -155.68 kcal Atomic # 8 Polarization: -61.87 SS G_CDS: -0.09 Total: -61.96 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.90 Total: 41.58 kcal Total: -104.06 2.24 -101.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715331929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.787 kcal (2) G-P(sol) polarization free energy of solvation -104.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds