Wall clock time and date at job start Tue Mar 31 2020 20:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47481 * 2 1 4 4 C 1.53003 * 109.46968 * 119.99696 * 2 1 3 5 5 N 1.46894 * 109.47297 * 174.99684 * 4 2 1 6 6 C 1.46904 * 111.00315 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47526 * 180.02562 * 6 5 4 8 8 O 1.21301 * 119.99586 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00037 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00124 * 359.97438 * 10 9 7 12 12 C 1.38948 * 120.00101 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99830 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47307 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47038 * 120.00162 * 14 12 10 17 17 H 1.48502 * 109.46809 * 239.99840 * 14 12 10 18 18 N 1.46496 * 109.47139 * 239.99535 * 2 1 3 19 19 C 1.46499 * 120.00201 * 300.00406 * 18 2 1 20 20 C 1.34774 * 120.00272 * 120.00506 * 18 2 1 21 21 O 1.21286 * 119.99519 * 0.02562 * 20 18 2 22 22 C 1.50694 * 120.00713 * 180.02562 * 20 18 2 23 23 C 1.50699 * 109.47843 * 179.97438 * 22 20 18 24 24 C 1.39869 * 125.90295 * 124.99796 * 23 22 20 25 25 C 1.35312 * 107.91889 * 180.22479 * 24 23 22 26 26 N 1.34951 * 107.74772 * 359.61173 * 25 24 23 27 27 C 1.46501 * 126.03602 * 180.15058 * 26 25 24 28 28 N 1.30837 * 125.89517 * 304.98057 * 23 22 20 29 29 H 1.09001 * 109.47589 * 300.00660 * 1 2 3 30 30 H 1.08997 * 109.47158 * 60.00069 * 1 2 3 31 31 H 1.08997 * 109.47481 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47433 * 295.00219 * 4 2 1 33 33 H 1.09008 * 109.47012 * 55.00085 * 4 2 1 34 34 H 1.00906 * 111.00268 * 303.95543 * 5 4 2 35 35 H 1.08996 * 109.46790 * 300.00383 * 6 5 4 36 36 H 1.08998 * 109.47198 * 60.00006 * 6 5 4 37 37 H 0.96997 * 120.00000 * 359.97438 * 9 7 6 38 38 H 0.97004 * 119.99600 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.47445 * 269.99925 * 19 18 2 40 40 H 1.08999 * 109.47468 * 29.99735 * 19 18 2 41 41 H 1.09005 * 109.47434 * 150.00300 * 19 18 2 42 42 H 1.09002 * 109.47210 * 59.99659 * 22 20 18 43 43 H 1.09007 * 109.47214 * 299.99761 * 22 20 18 44 44 H 1.08002 * 126.03560 * 359.95589 * 24 23 22 45 45 H 1.08008 * 126.12506 * 179.75891 * 25 24 23 46 46 H 1.08999 * 109.47098 * 270.25891 * 27 26 25 47 47 H 1.08998 * 109.47303 * 30.25669 * 27 26 25 48 48 H 1.08994 * 109.47129 * 150.25391 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8267 1.1905 6 6 4.0301 -1.5159 2.3763 7 6 5.5315 -1.6045 2.2810 8 8 6.1066 -1.1396 1.3194 9 7 6.2351 -2.2011 3.2635 10 6 7.6010 -2.2812 3.1770 11 1 8.1132 -1.8666 2.3213 12 6 8.3265 -2.8958 4.1902 13 7 7.7034 -3.3999 5.2316 14 14 10.1875 -3.0056 4.0719 15 1 10.6418 -2.3676 2.8103 16 1 10.7993 -2.3051 5.2297 17 1 10.6008 -4.4319 4.0816 18 7 2.0183 -0.6907 -1.1961 19 6 1.6643 -2.0932 -1.4279 20 6 2.7932 -0.0359 -2.0833 21 8 3.0866 1.1252 -1.8911 22 6 3.2951 -0.7461 -3.3139 23 6 4.1320 0.2011 -4.1346 24 6 5.4474 -0.0206 -4.5552 25 6 5.8468 1.0624 -5.2614 26 7 4.8176 1.9346 -5.2940 27 6 4.8155 3.2408 -5.9575 28 7 3.7535 1.3728 -4.5769 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7515 -0.1583 2.1370 33 1 1.6052 -1.7198 1.2952 34 1 3.7995 -1.2885 0.3434 35 1 3.7555 -0.9588 3.2720 36 1 3.6093 -2.5200 2.4297 37 1 5.7752 -2.5732 4.0322 38 1 8.2099 -3.8286 5.9391 39 1 2.4156 -2.7378 -0.9715 40 1 0.6903 -2.3003 -0.9846 41 1 1.6237 -2.2854 -2.5001 42 1 2.4471 -1.0883 -3.9072 43 1 3.9005 -1.6028 -3.0176 44 1 6.0410 -0.8989 -4.3487 45 1 6.8150 1.2024 -5.7191 46 1 5.1640 4.0029 -5.2605 47 1 5.4777 3.2098 -6.8228 48 1 3.8035 3.4814 -6.2829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715331931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:34 Heat of formation + Delta-G solvation = 19.071733 kcal Electronic energy + Delta-G solvation = -29264.247144 eV Core-core repulsion = 25163.601695 eV Total energy + Delta-G solvation = -4100.645449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20189 -39.89136 -38.20787 -36.77614 -34.54382 -33.93368 -33.69539 -31.99495 -31.14961 -30.30491 -29.46684 -27.53373 -26.95688 -25.89016 -24.91417 -23.19355 -21.87513 -21.14855 -19.87820 -19.17702 -18.73348 -17.84116 -17.29786 -16.95260 -16.32509 -15.95183 -15.72351 -15.33434 -15.18679 -14.48154 -14.40639 -14.18373 -13.87326 -13.81335 -13.71383 -13.42357 -13.25819 -13.08366 -12.76881 -12.69901 -12.60187 -12.45983 -12.30782 -12.20554 -11.98997 -11.78322 -11.55284 -11.54348 -11.34149 -11.04564 -10.85564 -10.55707 -10.31279 -10.18441 -9.63255 -9.47670 -9.18954 -8.67690 -8.52580 -8.34982 -7.96195 -7.89921 -6.37878 -3.78218 1.91420 2.49313 2.68168 2.84578 3.13109 3.19026 3.29189 3.37080 3.96361 4.13034 4.33317 4.36855 4.62102 4.72516 4.85232 4.95445 4.97499 4.99494 5.07822 5.15684 5.21161 5.23192 5.25626 5.27465 5.31118 5.40635 5.48221 5.51123 5.64174 5.69122 5.71340 5.81736 5.84066 5.95805 6.02882 6.03847 6.15499 6.32415 6.57749 6.64928 7.00712 7.30725 7.42012 7.59410 7.75798 7.76023 8.11403 8.35718 8.66447 9.22648 9.59263 10.11474 10.80164 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009561 B = 0.002866 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.973236 B = 9766.670087 C =12065.206765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 H 0.109 0.891 4 C 0.051 3.949 5 N -0.663 5.663 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.579 6.579 9 N -0.566 5.566 10 C -0.296 4.296 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.615 5.615 19 C 0.072 3.928 20 C 0.521 3.479 21 O -0.511 6.511 22 C -0.057 4.057 23 C 0.084 3.916 24 C -0.260 4.260 25 C 0.048 3.952 26 N -0.379 5.379 27 C 0.104 3.896 28 N -0.267 5.267 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.348 0.652 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.392 0.608 38 H 0.270 0.730 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.149 0.851 45 H 0.172 0.828 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 3.386 -18.238 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.127 0.873 4 C -0.080 4.080 5 N -0.296 5.296 6 C -0.082 4.082 7 C 0.227 3.773 8 O -0.463 6.463 9 N -0.203 5.203 10 C -0.426 4.426 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.351 5.351 19 C -0.071 4.071 20 C 0.308 3.692 21 O -0.384 6.384 22 C -0.098 4.098 23 C -0.083 4.083 24 C -0.290 4.290 25 C -0.097 4.097 26 N -0.162 5.162 27 C -0.037 4.037 28 N -0.089 5.089 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.168 0.832 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.167 0.833 45 H 0.190 0.810 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.370 5.885 -18.515 24.165 hybrid contribution 1.172 -1.964 0.533 2.349 sum -13.198 3.921 -17.982 22.648 Atomic orbital electron populations 1.22098 0.94901 1.02097 1.02600 1.21120 0.93140 0.98988 0.83224 0.87299 1.22327 0.89032 0.98686 0.97930 1.59986 1.07533 1.57313 1.04784 1.21679 0.95078 0.96780 0.94661 1.19840 0.88135 0.84082 0.85281 1.90547 1.71106 1.51155 1.33442 1.41867 1.07391 1.51070 1.19975 1.19754 0.81550 1.34751 1.06529 0.87916 1.25251 1.00625 0.96915 0.95251 1.69625 1.36526 1.38897 1.09460 0.85811 0.82352 0.77818 0.78438 1.19211 1.20773 1.20807 1.47815 1.51872 1.12278 1.23131 1.21812 1.01268 0.81958 1.02080 1.20281 0.77922 0.87086 0.83916 1.90749 1.55590 1.16639 1.75426 1.20060 0.99560 0.96945 0.93273 1.21499 0.94661 0.93458 0.98670 1.21389 0.96517 1.02119 1.08938 1.22471 0.94333 0.90874 1.02015 1.48486 1.10128 1.15726 1.41874 1.21796 1.04338 0.80836 0.96769 1.77356 1.09929 1.09549 1.12068 0.91275 0.92116 0.92391 0.90130 0.95451 0.83194 0.89657 0.94127 0.77518 0.92001 0.92559 0.90887 0.90890 0.87668 0.86839 0.83344 0.81044 0.90832 0.89689 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.17 37.15 0.34 -1.07 16 2 C 0.14 1.71 2.95 -67.93 -0.20 1.51 16 3 H 0.11 1.70 6.90 -51.93 -0.36 1.34 16 4 C 0.05 0.66 5.03 -3.83 -0.02 0.64 16 5 N -0.66 -11.68 6.12 -115.06 -0.70 -12.38 16 6 C 0.05 0.94 6.17 -4.97 -0.03 0.91 16 7 C 0.44 10.85 7.82 -10.99 -0.09 10.76 16 8 O -0.58 -16.49 15.78 5.54 0.09 -16.40 16 9 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 10 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 11 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 14 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 N -0.62 -7.34 1.83 -173.94 -0.32 -7.66 16 19 C 0.07 0.58 9.38 59.85 0.56 1.14 16 20 C 0.52 7.73 7.66 -10.99 -0.08 7.64 16 21 O -0.51 -10.04 14.89 5.55 0.08 -9.96 16 22 C -0.06 -0.67 4.83 -29.04 -0.14 -0.81 16 23 C 0.08 1.22 6.01 -82.41 -0.50 0.73 16 24 C -0.26 -3.40 10.72 -40.01 -0.43 -3.83 16 25 C 0.05 0.55 11.49 -17.22 -0.20 0.36 16 26 N -0.38 -4.79 4.01 -68.16 -0.27 -5.06 16 27 C 0.10 0.81 11.47 59.85 0.69 1.50 16 28 N -0.27 -4.19 11.92 33.67 0.40 -3.79 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.43 6.66 -51.93 -0.35 0.09 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.03 0.31 7.84 -51.92 -0.41 -0.10 16 34 H 0.35 6.43 7.55 -39.29 -0.30 6.13 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 40 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 41 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 42 H 0.11 0.92 7.40 -51.93 -0.38 0.53 16 43 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 44 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -39.17 401.71 -6.73 -45.90 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -7.36 Total: 14.57 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -0.34 Total: 11.35 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -0.23 Total: -67.91 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: 0.17 Total: -26.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.17 -6.73 -45.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715331931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.970 kcal (2) G-P(sol) polarization free energy of solvation -39.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds