Wall clock time and date at job start Tue Mar 31 2020 20:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47481 * 2 1 4 4 C 1.53003 * 109.46968 * 119.99696 * 2 1 3 5 5 N 1.46894 * 109.47297 * 174.99684 * 4 2 1 6 6 C 1.46904 * 111.00315 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47526 * 180.02562 * 6 5 4 8 8 O 1.21301 * 119.99586 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00037 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00124 * 359.97438 * 10 9 7 12 12 C 1.38948 * 120.00101 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99830 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47307 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47038 * 120.00162 * 14 12 10 17 17 H 1.48502 * 109.46809 * 239.99840 * 14 12 10 18 18 N 1.46496 * 109.47139 * 239.99535 * 2 1 3 19 19 C 1.46499 * 120.00201 * 300.00406 * 18 2 1 20 20 C 1.34774 * 120.00272 * 120.00506 * 18 2 1 21 21 O 1.21286 * 119.99519 * 0.02562 * 20 18 2 22 22 C 1.50694 * 120.00713 * 180.02562 * 20 18 2 23 23 C 1.50699 * 109.47843 * 179.97438 * 22 20 18 24 24 C 1.39869 * 125.90295 * 124.99796 * 23 22 20 25 25 C 1.35312 * 107.91889 * 180.22479 * 24 23 22 26 26 N 1.34951 * 107.74772 * 359.61173 * 25 24 23 27 27 C 1.46501 * 126.03602 * 180.15058 * 26 25 24 28 28 N 1.30837 * 125.89517 * 304.98057 * 23 22 20 29 29 H 1.09001 * 109.47589 * 300.00660 * 1 2 3 30 30 H 1.08997 * 109.47158 * 60.00069 * 1 2 3 31 31 H 1.08997 * 109.47481 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47433 * 295.00219 * 4 2 1 33 33 H 1.09008 * 109.47012 * 55.00085 * 4 2 1 34 34 H 1.00906 * 111.00268 * 303.95543 * 5 4 2 35 35 H 1.08996 * 109.46790 * 300.00383 * 6 5 4 36 36 H 1.08998 * 109.47198 * 60.00006 * 6 5 4 37 37 H 0.96997 * 120.00000 * 359.97438 * 9 7 6 38 38 H 0.97004 * 119.99600 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.47445 * 269.99925 * 19 18 2 40 40 H 1.08999 * 109.47468 * 29.99735 * 19 18 2 41 41 H 1.09005 * 109.47434 * 150.00300 * 19 18 2 42 42 H 1.09002 * 109.47210 * 59.99659 * 22 20 18 43 43 H 1.09007 * 109.47214 * 299.99761 * 22 20 18 44 44 H 1.08002 * 126.03560 * 359.95589 * 24 23 22 45 45 H 1.08008 * 126.12506 * 179.75891 * 25 24 23 46 46 H 1.08999 * 109.47098 * 270.25891 * 27 26 25 47 47 H 1.08998 * 109.47303 * 30.25669 * 27 26 25 48 48 H 1.08994 * 109.47129 * 150.25391 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8267 1.1905 6 6 4.0301 -1.5159 2.3763 7 6 5.5315 -1.6045 2.2810 8 8 6.1066 -1.1396 1.3194 9 7 6.2351 -2.2011 3.2635 10 6 7.6010 -2.2812 3.1770 11 1 8.1132 -1.8666 2.3213 12 6 8.3265 -2.8958 4.1902 13 7 7.7034 -3.3999 5.2316 14 14 10.1875 -3.0056 4.0719 15 1 10.6418 -2.3676 2.8103 16 1 10.7993 -2.3051 5.2297 17 1 10.6008 -4.4319 4.0816 18 7 2.0183 -0.6907 -1.1961 19 6 1.6643 -2.0932 -1.4279 20 6 2.7932 -0.0359 -2.0833 21 8 3.0866 1.1252 -1.8911 22 6 3.2951 -0.7461 -3.3139 23 6 4.1320 0.2011 -4.1346 24 6 5.4474 -0.0206 -4.5552 25 6 5.8468 1.0624 -5.2614 26 7 4.8176 1.9346 -5.2940 27 6 4.8155 3.2408 -5.9575 28 7 3.7535 1.3728 -4.5769 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7515 -0.1583 2.1370 33 1 1.6052 -1.7198 1.2952 34 1 3.7995 -1.2885 0.3434 35 1 3.7555 -0.9588 3.2720 36 1 3.6093 -2.5200 2.4297 37 1 5.7752 -2.5732 4.0322 38 1 8.2099 -3.8286 5.9391 39 1 2.4156 -2.7378 -0.9715 40 1 0.6903 -2.3003 -0.9846 41 1 1.6237 -2.2854 -2.5001 42 1 2.4471 -1.0883 -3.9072 43 1 3.9005 -1.6028 -3.0176 44 1 6.0410 -0.8989 -4.3487 45 1 6.8150 1.2024 -5.7191 46 1 5.1640 4.0029 -5.2605 47 1 5.4777 3.2098 -6.8228 48 1 3.8035 3.4814 -6.2829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715331931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:33 Heat of formation + Delta-G solvation = -11.307262 kcal Electronic energy + Delta-G solvation = -29265.564476 eV Core-core repulsion = 25163.601695 eV Total energy + Delta-G solvation = -4101.962781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13357 -40.93733 -40.10632 -37.96749 -36.13338 -35.48394 -34.80421 -33.30146 -32.92376 -31.18594 -30.38378 -28.96923 -27.74110 -26.77382 -26.57495 -24.60826 -22.88414 -22.04014 -21.17271 -20.73821 -19.92599 -19.70419 -18.32540 -17.97754 -17.73078 -17.12335 -16.93966 -16.55731 -16.37864 -16.16077 -15.95936 -15.40522 -15.23648 -15.01180 -14.65405 -14.52618 -14.37509 -14.12870 -14.03387 -13.66545 -13.53907 -13.47254 -13.27133 -13.17016 -13.06133 -13.00658 -12.94267 -12.81667 -12.74418 -12.45690 -12.38085 -12.11888 -11.82549 -11.53227 -11.52335 -10.76475 -10.37357 -10.15914 -10.02075 -9.60804 -9.45396 -9.25824 -8.47431 -5.96053 0.99070 1.35878 1.41030 1.55596 1.67520 1.74377 1.78980 2.04229 2.21234 2.29074 2.92249 3.19674 3.47872 3.52612 3.76436 3.91430 4.00603 4.16180 4.21794 4.26383 4.32543 4.36217 4.38836 4.41785 4.47765 4.48473 4.56184 4.65528 4.69564 4.72133 4.73392 4.81583 4.84428 4.91686 4.99056 5.11333 5.16183 5.30588 5.40463 5.66456 5.71709 5.90121 6.12703 6.21022 6.37969 6.47510 6.60055 6.80427 7.12367 7.31305 7.55329 8.11678 8.70268 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009561 B = 0.002866 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.973236 B = 9766.670087 C =12065.206765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 H 0.066 0.934 4 C 0.055 3.945 5 N -0.688 5.688 6 C 0.067 3.933 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.992 3.008 15 H -0.275 1.275 16 H -0.271 1.271 17 H -0.267 1.267 18 N -0.610 5.610 19 C 0.064 3.936 20 C 0.512 3.488 21 O -0.573 6.573 22 C -0.053 4.053 23 C 0.065 3.935 24 C -0.291 4.291 25 C 0.054 3.946 26 N -0.387 5.387 27 C 0.095 3.905 28 N -0.314 5.314 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.340 0.660 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.159 0.841 45 H 0.212 0.788 46 H 0.073 0.927 47 H 0.123 0.877 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.942 1.847 -18.360 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 H 0.084 0.916 4 C -0.075 4.075 5 N -0.321 5.321 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.511 6.511 9 N -0.209 5.209 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.816 3.184 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.192 1.192 18 N -0.344 5.344 19 C -0.078 4.078 20 C 0.300 3.700 21 O -0.451 6.451 22 C -0.094 4.094 23 C -0.102 4.102 24 C -0.320 4.320 25 C -0.092 4.092 26 N -0.169 5.169 27 C -0.045 4.045 28 N -0.137 5.137 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.177 0.823 45 H 0.229 0.771 46 H 0.091 0.909 47 H 0.141 0.859 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.182 4.303 -18.603 24.395 hybrid contribution 1.392 -1.452 0.564 2.089 sum -13.791 2.851 -18.039 22.885 Atomic orbital electron populations 1.22006 0.91792 1.03758 1.02919 1.21081 0.95354 0.96829 0.83368 0.91558 1.22417 0.86170 1.00401 0.98482 1.59966 1.10647 1.57489 1.03975 1.21536 0.90286 0.98970 0.95782 1.20940 0.90731 0.82163 0.83867 1.90516 1.72849 1.52666 1.35070 1.41917 1.06859 1.51566 1.20599 1.19674 0.83064 1.36785 1.06735 0.90645 1.26030 1.04908 0.95790 0.94467 1.69676 1.38205 1.38505 1.09677 0.84884 0.76868 0.78434 0.78223 1.19968 1.19642 1.19236 1.47916 1.50624 1.13653 1.22163 1.22120 1.02279 0.79253 1.04121 1.20865 0.77610 0.86596 0.84914 1.90712 1.58098 1.19348 1.76983 1.20175 1.00611 0.96489 0.92119 1.21989 0.95685 0.93664 0.98828 1.21734 0.96522 1.03493 1.10263 1.23125 0.95309 0.89923 1.00795 1.48888 1.09768 1.16917 1.41373 1.22137 1.05530 0.79060 0.97760 1.77257 1.12102 1.10569 1.13812 0.90141 0.92707 0.89916 0.89251 0.92465 0.84078 0.87957 0.91064 0.76904 0.91253 0.92750 0.88516 0.88490 0.84597 0.85240 0.82338 0.77116 0.90861 0.85900 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.17 71.98 0.66 -1.64 16 2 C 0.14 3.31 2.95 44.99 0.13 3.44 16 3 H 0.07 2.19 6.90 -2.39 -0.02 2.17 16 4 C 0.05 1.31 5.03 86.31 0.43 1.74 16 5 N -0.69 -23.88 6.12 -517.93 -3.17 -27.05 16 6 C 0.07 2.38 6.17 85.56 0.53 2.91 16 7 C 0.44 21.70 7.82 87.66 0.69 22.39 16 8 O -0.62 -36.82 15.78 -3.10 -0.05 -36.87 16 9 N -0.57 -30.17 5.29 -306.98 -1.62 -31.79 16 10 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 11 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 13 N -0.92 -50.09 13.05 21.66 0.28 -49.80 16 14 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 N -0.61 -14.16 1.83 -822.61 -1.51 -15.67 16 19 C 0.06 0.87 9.38 127.77 1.20 2.07 16 20 C 0.51 15.65 7.66 87.66 0.67 16.32 16 21 O -0.57 -24.09 14.89 -3.05 -0.05 -24.14 16 22 C -0.05 -1.25 4.83 29.10 0.14 -1.11 16 23 C 0.06 1.94 6.01 43.10 0.26 2.20 16 24 C -0.29 -7.72 10.72 21.99 0.24 -7.48 16 25 C 0.05 1.22 11.49 83.54 0.96 2.18 16 26 N -0.39 -9.82 4.01 -369.57 -1.48 -11.31 16 27 C 0.10 1.44 11.47 127.77 1.47 2.90 16 28 N -0.31 -10.27 11.92 -47.39 -0.56 -10.84 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.91 6.66 -2.39 -0.02 0.89 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.07 7.84 -2.38 -0.02 1.05 16 34 H 0.34 12.60 7.55 -89.69 -0.68 11.92 16 35 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 38 H 0.28 14.09 8.31 -92.71 -0.77 13.31 16 39 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 40 H 0.10 0.87 6.43 -2.39 -0.02 0.86 16 41 H 0.10 0.86 6.44 -2.38 -0.02 0.84 16 42 H 0.14 2.22 7.40 -2.39 -0.02 2.20 16 43 H 0.13 2.53 8.09 -2.38 -0.02 2.51 16 44 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 45 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 47 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -90.40 401.71 2.10 -88.29 By element: Atomic # 1 Polarization: 46.79 SS G_CDS: -0.42 Total: 46.37 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 8.65 Total: 27.13 kcal Atomic # 7 Polarization: -138.39 SS G_CDS: -8.06 Total: -146.45 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -0.09 Total: -61.01 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -90.40 2.10 -88.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715331931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.987 kcal (2) G-P(sol) polarization free energy of solvation -90.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds