Wall clock time and date at job start Tue Mar 31 2020 20:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.46992 * 269.72101 * 8 6 4 10 10 N 1.46896 * 109.47074 * 179.97438 * 9 8 6 11 11 C 1.46892 * 110.99931 * 66.04761 * 10 9 8 12 12 C 1.46903 * 110.99958 * 190.00106 * 10 9 8 13 13 C 1.50702 * 109.47331 * 169.99967 * 12 10 9 14 14 O 1.21291 * 119.99484 * 0.02562 * 13 12 10 15 15 N 1.34772 * 120.00010 * 179.97438 * 13 12 10 16 16 C 1.37099 * 119.99647 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00276 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99640 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99870 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00408 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46839 * 89.99930 * 20 18 16 22 22 H 1.48498 * 109.47041 * 210.00110 * 20 18 16 23 23 H 1.48498 * 109.46739 * 330.00323 * 20 18 16 24 24 N 1.46500 * 109.47277 * 120.00513 * 2 1 3 25 25 C 1.34940 * 126.03723 * 35.00037 * 24 2 1 26 26 C 1.35318 * 107.74670 * 179.97438 * 25 24 2 27 27 C 1.39878 * 107.91661 * 359.97438 * 26 25 24 28 28 N 1.30830 * 108.20404 * 359.74110 * 27 26 25 29 29 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 30 30 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 32 32 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 33 33 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 34 34 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 35 35 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 36 36 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 37 37 H 1.09000 * 109.47214 * 300.00285 * 9 8 6 38 38 H 1.09008 * 109.47142 * 59.99450 * 9 8 6 39 39 H 1.09000 * 109.47326 * 60.00194 * 11 10 9 40 40 H 1.09008 * 109.47417 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47317 * 299.99688 * 11 10 9 42 42 H 1.09000 * 109.47106 * 290.00152 * 12 10 9 43 43 H 1.08995 * 109.47131 * 49.99959 * 12 10 9 44 44 H 0.96995 * 120.00083 * 0.02562 * 15 13 12 45 45 H 0.97002 * 119.99989 * 179.97438 * 19 18 16 46 46 H 1.08001 * 126.12703 * 359.95401 * 25 24 2 47 47 H 1.07997 * 126.04431 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.89426 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5392 -0.3441 -4.0716 10 7 4.0286 -1.0372 -5.2708 11 6 3.1551 -0.7768 -6.4227 12 6 5.4171 -0.6599 -5.5670 13 6 5.9642 -1.5621 -6.6430 14 8 5.2659 -2.4334 -7.1168 15 7 7.2289 -1.4002 -7.0795 16 6 7.7264 -2.2207 -8.0588 17 1 7.1047 -2.9965 -8.4806 18 6 9.0305 -2.0541 -8.5084 19 7 9.5076 -2.8408 -9.4467 20 14 10.1057 -0.7117 -7.7793 21 1 10.8422 -1.2495 -6.6073 22 1 11.0759 -0.2445 -8.8019 23 1 9.2536 0.4258 -7.3491 24 7 2.0184 -0.6907 1.1961 25 6 1.4404 -1.7560 1.7893 26 6 2.1969 -2.0932 2.8593 27 6 3.2747 -1.2037 2.9218 28 7 3.1719 -0.3662 1.9219 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.1874 0.6358 -2.6194 33 1 1.0224 1.5985 -1.7375 34 1 1.1130 1.4628 -3.5100 35 1 2.3200 -2.0011 -3.4322 36 1 1.4741 -0.8191 -4.4598 37 1 3.4138 0.7164 -4.2902 38 1 4.2596 -0.4656 -3.2626 39 1 3.1290 0.2941 -6.6242 40 1 3.5406 -1.3014 -7.2970 41 1 2.1477 -1.1296 -6.2018 42 1 5.4473 0.3743 -5.9100 43 1 6.0214 -0.7615 -4.6657 44 1 7.7872 -0.7032 -6.7009 45 1 10.4179 -2.7243 -9.7609 46 1 0.5357 -2.2507 1.4678 47 1 2.0030 -2.9054 3.5441 48 1 4.0589 -1.2103 3.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715515874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:31 Heat of formation + Delta-G solvation = 48.062669 kcal Electronic energy + Delta-G solvation = -29048.021782 eV Core-core repulsion = 24948.633474 eV Total energy + Delta-G solvation = -4099.388308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62686 -40.21041 -38.77423 -36.95917 -35.81075 -34.90720 -33.87123 -31.66182 -30.75059 -30.22901 -29.33486 -27.93709 -27.32012 -25.84892 -24.82069 -23.73591 -21.75016 -21.26115 -20.80620 -19.62452 -19.31473 -18.23768 -17.68904 -17.67865 -16.65114 -16.06320 -15.76124 -15.33685 -15.21118 -14.96772 -14.80458 -14.42027 -14.14893 -13.98552 -13.92887 -13.74492 -13.52624 -13.25766 -13.09835 -13.01874 -12.90350 -12.80665 -12.44384 -12.30503 -12.22220 -12.04651 -11.90446 -11.44796 -11.37149 -11.02621 -10.92692 -10.90918 -10.57987 -10.35015 -9.95932 -9.60556 -9.52089 -9.15619 -8.80863 -8.54499 -8.16166 -7.97522 -6.29171 -3.80377 1.57186 2.01988 2.15531 2.63628 2.68400 3.04046 3.09232 3.16699 3.75571 3.80496 3.97428 4.06129 4.12436 4.23005 4.48167 4.56106 4.69561 4.73549 4.77189 4.82787 4.90202 4.96880 5.06704 5.10547 5.23209 5.27031 5.33376 5.37808 5.49883 5.56191 5.56752 5.70049 5.77456 5.80265 5.83451 5.89481 5.97775 6.11012 6.41766 6.45774 6.66951 6.90656 7.12039 7.28522 7.47851 7.60472 7.72566 8.16570 8.62362 8.97243 9.44562 9.85550 10.83953 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.002163 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.011614 B =12940.561543 C =13974.503096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.146 3.854 3 H 0.126 0.874 4 C 0.498 3.502 5 O -0.508 6.508 6 N -0.612 5.612 7 C 0.069 3.931 8 C 0.120 3.880 9 C 0.043 3.957 10 N -0.515 5.515 11 C 0.019 3.981 12 C 0.045 3.955 13 C 0.454 3.546 14 O -0.559 6.559 15 N -0.591 5.591 16 C -0.303 4.303 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.879 3.121 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 N -0.357 5.357 25 C 0.067 3.933 26 C -0.273 4.273 27 C 0.048 3.952 28 N -0.292 5.292 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.015 0.985 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.169 0.831 47 H 0.148 0.852 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.523 12.175 22.023 33.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.039 3.961 3 H 0.144 0.856 4 C 0.283 3.717 5 O -0.381 6.381 6 N -0.347 5.347 7 C -0.074 4.074 8 C -0.003 4.003 9 C -0.086 4.086 10 N -0.240 5.240 11 C -0.129 4.129 12 C -0.087 4.087 13 C 0.240 3.760 14 O -0.440 6.440 15 N -0.231 5.231 16 C -0.432 4.432 17 H 0.138 0.862 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 N -0.139 5.139 25 C -0.078 4.078 26 C -0.303 4.303 27 C -0.138 4.138 28 N -0.112 5.112 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.033 0.967 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.186 0.814 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -20.973 11.535 20.990 31.835 hybrid contribution 0.776 1.269 0.645 1.621 sum -20.197 12.805 21.635 32.248 Atomic orbital electron populations 1.22428 0.90633 1.04715 1.05347 1.21040 0.96138 0.97543 0.81376 0.85597 1.20773 0.81121 0.85290 0.84516 1.90824 1.36033 1.25413 1.85812 1.47784 1.51335 1.29797 1.05777 1.22084 0.94555 0.87148 1.03608 1.21521 0.94972 0.98507 0.85274 1.22429 0.97086 0.95230 0.93886 1.61437 1.01361 1.57421 1.03746 1.22620 0.96778 0.98244 0.95277 1.21890 0.90134 0.97110 0.99535 1.19603 0.82862 0.87580 0.85997 1.90522 1.57951 1.35714 1.59845 1.42211 1.11956 1.32183 1.36751 1.19424 0.97684 1.13060 1.13046 0.86245 1.25035 0.96786 0.97720 0.96647 1.69622 1.16750 1.37839 1.27971 0.86677 0.81194 0.81814 0.79734 1.19567 1.20195 1.19575 1.48176 1.19553 1.24745 1.21455 1.22400 0.99929 0.90627 0.94843 1.21480 0.99271 1.06153 1.03354 1.23893 0.99046 0.93987 0.96908 1.77365 1.01670 1.24786 1.07357 0.88341 0.90819 0.90085 0.91621 0.90851 0.90338 0.88523 0.89934 0.95117 0.90634 0.96688 0.88363 0.91985 0.93358 0.89276 0.79732 0.91638 0.81362 0.83469 0.79962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 8.47 37.16 0.31 -0.37 16 2 C 0.15 1.16 2.93 -69.08 -0.20 0.96 16 3 H 0.13 0.84 7.41 -51.93 -0.38 0.45 16 4 C 0.50 5.51 7.15 -10.98 -0.08 5.43 16 5 O -0.51 -8.29 15.99 5.56 0.09 -8.20 16 6 N -0.61 -5.33 2.87 -181.57 -0.52 -5.85 16 7 C 0.07 0.28 8.80 59.85 0.53 0.81 16 8 C 0.12 1.33 5.34 -4.04 -0.02 1.31 16 9 C 0.04 0.56 5.28 -3.83 -0.02 0.54 16 10 N -0.52 -8.50 4.50 -244.37 -1.10 -9.60 16 11 C 0.02 0.28 8.96 60.06 0.54 0.82 16 12 C 0.04 0.79 5.45 -4.97 -0.03 0.77 16 13 C 0.45 10.59 7.47 -10.99 -0.08 10.50 16 14 O -0.56 -15.10 13.91 5.55 0.08 -15.02 16 15 N -0.59 -14.45 5.09 -10.97 -0.06 -14.50 16 16 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 17 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 20 Si 0.88 19.76 27.74 -169.99 -4.71 15.05 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 24 N -0.36 -3.84 3.02 -55.99 -0.17 -4.01 16 25 C 0.07 0.64 10.57 -17.23 -0.18 0.45 16 26 C -0.27 -2.57 10.80 -40.01 -0.43 -3.00 16 27 C 0.05 0.50 12.03 -17.36 -0.21 0.30 16 28 N -0.29 -3.71 12.58 30.63 0.39 -3.32 16 29 H 0.10 0.19 4.51 -51.93 -0.23 -0.05 16 30 H 0.07 0.31 7.15 -51.93 -0.37 -0.06 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.15 6.95 -51.93 -0.36 -0.21 16 33 H 0.07 0.17 6.01 -51.93 -0.31 -0.14 16 34 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 35 H 0.10 1.36 7.41 -51.93 -0.38 0.97 16 36 H 0.08 0.76 6.48 -51.93 -0.34 0.42 16 37 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 38 H 0.08 1.10 7.93 -51.92 -0.41 0.69 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 1.87 5.82 -51.92 -0.30 1.57 16 41 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.09 1.46 7.93 -51.93 -0.41 1.04 16 44 H 0.37 7.98 5.76 -40.82 -0.24 7.75 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.17 1.08 7.26 -52.49 -0.38 0.70 16 47 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -38.87 388.81 -6.47 -45.35 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.97 Total: 8.88 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.12 Total: 10.68 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.69 Total: -62.60 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.22 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.87 -6.47 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715515874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.409 kcal (2) G-P(sol) polarization free energy of solvation -38.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds