Wall clock time and date at job start Tue Mar 31 2020 20:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.46992 * 269.72101 * 8 6 4 10 10 N 1.46896 * 109.47074 * 179.97438 * 9 8 6 11 11 C 1.46892 * 110.99931 * 66.04761 * 10 9 8 12 12 C 1.46903 * 110.99958 * 190.00106 * 10 9 8 13 13 C 1.50702 * 109.47331 * 169.99967 * 12 10 9 14 14 O 1.21291 * 119.99484 * 0.02562 * 13 12 10 15 15 N 1.34772 * 120.00010 * 179.97438 * 13 12 10 16 16 C 1.37099 * 119.99647 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00276 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99640 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99870 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00408 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46839 * 89.99930 * 20 18 16 22 22 H 1.48498 * 109.47041 * 210.00110 * 20 18 16 23 23 H 1.48498 * 109.46739 * 330.00323 * 20 18 16 24 24 N 1.46500 * 109.47277 * 120.00513 * 2 1 3 25 25 C 1.34940 * 126.03723 * 35.00037 * 24 2 1 26 26 C 1.35318 * 107.74670 * 179.97438 * 25 24 2 27 27 C 1.39878 * 107.91661 * 359.97438 * 26 25 24 28 28 N 1.30830 * 108.20404 * 359.74110 * 27 26 25 29 29 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 30 30 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 32 32 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 33 33 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 34 34 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 35 35 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 36 36 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 37 37 H 1.09000 * 109.47214 * 300.00285 * 9 8 6 38 38 H 1.09008 * 109.47142 * 59.99450 * 9 8 6 39 39 H 1.09000 * 109.47326 * 60.00194 * 11 10 9 40 40 H 1.09008 * 109.47417 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47317 * 299.99688 * 11 10 9 42 42 H 1.09000 * 109.47106 * 290.00152 * 12 10 9 43 43 H 1.08995 * 109.47131 * 49.99959 * 12 10 9 44 44 H 0.96995 * 120.00083 * 0.02562 * 15 13 12 45 45 H 0.97002 * 119.99989 * 179.97438 * 19 18 16 46 46 H 1.08001 * 126.12703 * 359.95401 * 25 24 2 47 47 H 1.07997 * 126.04431 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.89426 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5392 -0.3441 -4.0716 10 7 4.0286 -1.0372 -5.2708 11 6 3.1551 -0.7768 -6.4227 12 6 5.4171 -0.6599 -5.5670 13 6 5.9642 -1.5621 -6.6430 14 8 5.2659 -2.4334 -7.1168 15 7 7.2289 -1.4002 -7.0795 16 6 7.7264 -2.2207 -8.0588 17 1 7.1047 -2.9965 -8.4806 18 6 9.0305 -2.0541 -8.5084 19 7 9.5076 -2.8408 -9.4467 20 14 10.1057 -0.7117 -7.7793 21 1 10.8422 -1.2495 -6.6073 22 1 11.0759 -0.2445 -8.8019 23 1 9.2536 0.4258 -7.3491 24 7 2.0184 -0.6907 1.1961 25 6 1.4404 -1.7560 1.7893 26 6 2.1969 -2.0932 2.8593 27 6 3.2747 -1.2037 2.9218 28 7 3.1719 -0.3662 1.9219 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.1874 0.6358 -2.6194 33 1 1.0224 1.5985 -1.7375 34 1 1.1130 1.4628 -3.5100 35 1 2.3200 -2.0011 -3.4322 36 1 1.4741 -0.8191 -4.4598 37 1 3.4138 0.7164 -4.2902 38 1 4.2596 -0.4656 -3.2626 39 1 3.1290 0.2941 -6.6242 40 1 3.5406 -1.3014 -7.2970 41 1 2.1477 -1.1296 -6.2018 42 1 5.4473 0.3743 -5.9100 43 1 6.0214 -0.7615 -4.6657 44 1 7.7872 -0.7032 -6.7009 45 1 10.4179 -2.7243 -9.7609 46 1 0.5357 -2.2507 1.4678 47 1 2.0030 -2.9054 3.5441 48 1 4.0589 -1.2103 3.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715515874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:30 Heat of formation + Delta-G solvation = 16.452629 kcal Electronic energy + Delta-G solvation = -29049.392496 eV Core-core repulsion = 24948.633474 eV Total energy + Delta-G solvation = -4100.759022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32927 -41.02028 -40.48954 -38.25974 -36.71394 -35.97345 -35.51779 -33.78195 -31.63270 -30.96975 -30.13828 -29.21209 -27.88005 -27.13917 -26.00432 -24.87878 -22.78287 -22.00284 -21.65690 -21.29867 -20.36550 -20.14275 -18.38125 -18.37059 -17.92870 -17.29877 -16.90195 -16.59604 -16.48817 -16.23204 -15.67484 -15.42433 -15.34974 -15.25217 -14.84411 -14.60568 -14.46514 -14.42050 -14.26754 -14.12764 -13.74595 -13.65399 -13.54199 -13.43933 -13.13368 -13.08177 -12.73623 -12.66255 -12.56072 -12.44093 -12.42320 -11.99927 -11.91548 -11.66173 -11.50411 -11.16738 -10.45739 -10.36374 -10.26053 -9.82611 -9.52325 -9.25359 -8.43375 -6.04046 0.85199 1.27248 1.33298 1.36152 1.41317 1.42236 1.91661 1.93305 1.97014 2.20517 2.64448 3.11960 3.20130 3.29020 3.52104 3.75137 3.88027 3.95173 4.01049 4.05544 4.13266 4.23590 4.30295 4.36211 4.39349 4.52083 4.56461 4.57934 4.62771 4.67560 4.71200 4.76975 4.85321 4.90657 4.92975 5.12007 5.14931 5.19996 5.36103 5.50723 5.72819 5.84112 5.96419 6.01857 6.14261 6.25689 6.57298 6.74652 6.85811 6.97020 7.36834 7.93677 8.74207 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.002163 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.011614 B =12940.561543 C =13974.503096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 H 0.140 0.860 4 C 0.493 3.507 5 O -0.574 6.574 6 N -0.603 5.603 7 C 0.056 3.944 8 C 0.125 3.875 9 C 0.053 3.947 10 N -0.544 5.544 11 C 0.024 3.976 12 C 0.056 3.944 13 C 0.452 3.548 14 O -0.603 6.603 15 N -0.593 5.593 16 C -0.327 4.327 17 H 0.056 0.944 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.232 1.232 24 N -0.365 5.365 25 C 0.060 3.940 26 C -0.286 4.286 27 C 0.037 3.963 28 N -0.337 5.337 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.195 0.805 47 H 0.168 0.832 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.049 16.049 24.036 36.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.158 0.842 4 C 0.280 3.720 5 O -0.452 6.452 6 N -0.336 5.336 7 C -0.085 4.085 8 C 0.002 3.998 9 C -0.075 4.075 10 N -0.269 5.269 11 C -0.123 4.123 12 C -0.075 4.075 13 C 0.240 3.760 14 O -0.487 6.487 15 N -0.235 5.235 16 C -0.456 4.456 17 H 0.075 0.925 18 C -0.214 4.214 19 N -0.574 5.574 20 Si 0.784 3.216 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.155 1.155 24 N -0.148 5.148 25 C -0.085 4.085 26 C -0.315 4.315 27 C -0.148 4.148 28 N -0.158 5.158 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.212 0.788 47 H 0.185 0.815 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -22.557 15.469 23.009 35.743 hybrid contribution 1.118 -0.042 -0.036 1.120 sum -21.439 15.427 22.973 35.005 Atomic orbital electron populations 1.22481 0.87283 1.05211 1.07274 1.21341 0.98510 0.97196 0.79058 0.84241 1.21415 0.80117 0.84567 0.85912 1.90793 1.39143 1.28437 1.86818 1.47843 1.50914 1.30550 1.04285 1.22503 0.95066 0.85606 1.05277 1.21325 0.94985 0.96670 0.86836 1.22361 0.97153 0.96547 0.91475 1.61343 1.01034 1.59307 1.05262 1.22503 0.97306 0.99312 0.93190 1.21784 0.91054 0.96930 0.97710 1.20799 0.81993 0.87258 0.85994 1.90510 1.59037 1.37780 1.61367 1.42045 1.12774 1.32327 1.36307 1.18996 0.98021 1.13431 1.15149 0.92538 1.26098 0.97920 1.00749 0.96597 1.69800 1.17655 1.40236 1.29702 0.85383 0.78745 0.78611 0.78907 1.18480 1.19699 1.15533 1.48446 1.19130 1.25279 1.21940 1.22940 1.00665 0.90274 0.94628 1.21856 0.99039 1.06613 1.03969 1.24387 0.99826 0.93754 0.96871 1.77265 1.03327 1.26530 1.08714 0.85741 0.91057 0.88738 0.88991 0.88693 0.89160 0.92317 0.87484 0.92144 0.92691 0.94036 0.92911 0.89668 0.89943 0.87629 0.77617 0.91115 0.78838 0.81468 0.77933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 8.47 71.98 0.61 -0.14 16 2 C 0.14 2.03 2.93 44.25 0.13 2.16 16 3 H 0.14 1.51 7.41 -2.39 -0.02 1.49 16 4 C 0.49 10.38 7.15 87.66 0.63 11.00 16 5 O -0.57 -19.24 15.99 -3.03 -0.05 -19.29 16 6 N -0.60 -9.01 2.87 -846.74 -2.43 -11.45 16 7 C 0.06 0.20 8.80 127.77 1.12 1.32 16 8 C 0.13 2.57 5.34 86.38 0.46 3.03 16 9 C 0.05 1.26 5.28 86.30 0.46 1.72 16 10 N -0.54 -17.25 4.50 -927.06 -4.17 -21.42 16 11 C 0.02 0.70 8.96 127.69 1.14 1.85 16 12 C 0.06 1.89 5.45 85.56 0.47 2.36 16 13 C 0.45 21.34 7.47 87.66 0.66 22.00 16 14 O -0.60 -34.24 13.91 -3.06 -0.04 -34.28 16 15 N -0.59 -29.08 5.09 -306.99 -1.56 -30.64 16 16 C -0.33 -19.62 10.16 84.04 0.85 -18.77 16 17 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 18 C -0.01 -0.85 5.50 84.93 0.47 -0.38 16 19 N -0.93 -57.24 13.96 21.66 0.30 -56.94 16 20 Si 0.96 39.95 27.74 68.60 1.90 41.85 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 24 N -0.37 -7.57 3.02 -331.05 -1.00 -8.57 16 25 C 0.06 1.08 10.57 83.54 0.88 1.97 16 26 C -0.29 -5.17 10.80 21.99 0.24 -4.93 16 27 C 0.04 0.77 12.03 85.24 1.03 1.80 16 28 N -0.34 -8.55 12.58 -57.02 -0.72 -9.27 16 29 H 0.12 -0.12 4.51 -2.39 -0.01 -0.13 16 30 H 0.07 0.40 7.15 -2.39 -0.02 0.38 16 31 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.09 -0.08 6.95 -2.39 -0.02 -0.10 16 33 H 0.09 -0.02 6.01 -2.39 -0.01 -0.03 16 34 H 0.09 0.19 8.07 -2.38 -0.02 0.18 16 35 H 0.06 1.68 7.41 -2.39 -0.02 1.66 16 36 H 0.11 1.64 6.48 -2.39 -0.02 1.63 16 37 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 38 H 0.05 1.54 7.93 -2.38 -0.02 1.52 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 2.04 5.82 -2.38 -0.01 2.02 16 41 H 0.08 1.99 6.47 -2.39 -0.02 1.98 16 42 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 43 H 0.11 3.22 7.93 -2.39 -0.02 3.20 16 44 H 0.39 15.93 5.76 -92.71 -0.53 15.40 16 45 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.19 2.18 7.26 -2.91 -0.02 2.16 16 47 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 48 H 0.20 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -94.69 388.81 1.76 -92.93 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.39 Total: 32.10 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 9.14 Total: 24.98 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -9.58 Total: -138.29 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.09 Total: -53.57 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.90 Total: 41.85 kcal Total: -94.69 1.76 -92.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715515874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.382 kcal (2) G-P(sol) polarization free energy of solvation -94.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds