Wall clock time and date at job start Tue Mar 31 2020 20:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 O 1.21278 * 120.00240 * 120.00385 * 4 2 1 6 6 N 1.34780 * 120.00249 * 300.00184 * 4 2 1 7 7 C 1.46502 * 119.99699 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00188 * 180.02562 * 6 4 2 9 9 C 1.52995 * 109.47101 * 89.99879 * 8 6 4 10 10 N 1.46896 * 109.47267 * 179.97438 * 9 8 6 11 11 C 1.46897 * 111.00112 * 66.04605 * 10 9 8 12 12 C 1.46900 * 111.00503 * 189.99992 * 10 9 8 13 13 C 1.50700 * 109.47440 * 169.99640 * 12 10 9 14 14 O 1.21287 * 120.00243 * 0.02562 * 13 12 10 15 15 N 1.34774 * 120.00100 * 179.97438 * 13 12 10 16 16 C 1.37092 * 120.00187 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00225 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00331 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99626 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00362 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47288 * 89.99808 * 20 18 16 22 22 H 1.48502 * 109.46983 * 210.00500 * 20 18 16 23 23 H 1.48499 * 109.46634 * 330.00007 * 20 18 16 24 24 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 25 25 C 1.34949 * 126.03579 * 325.00408 * 24 2 1 26 26 C 1.35318 * 107.74539 * 179.97438 * 25 24 2 27 27 C 1.39867 * 107.92181 * 359.97438 * 26 25 24 28 28 N 1.30841 * 108.20183 * 359.74201 * 27 26 25 29 29 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.08995 * 109.47386 * 90.00307 * 7 6 4 33 33 H 1.08998 * 109.47238 * 210.00186 * 7 6 4 34 34 H 1.09002 * 109.47312 * 329.99896 * 7 6 4 35 35 H 1.08999 * 109.46628 * 209.99856 * 8 6 4 36 36 H 1.08991 * 109.47048 * 329.99991 * 8 6 4 37 37 H 1.09001 * 109.47582 * 300.00277 * 9 8 6 38 38 H 1.09002 * 109.47604 * 59.99656 * 9 8 6 39 39 H 1.08998 * 109.47456 * 59.99849 * 11 10 9 40 40 H 1.09002 * 109.47598 * 180.02562 * 11 10 9 41 41 H 1.09004 * 109.46985 * 300.00004 * 11 10 9 42 42 H 1.08999 * 109.47174 * 290.00565 * 12 10 9 43 43 H 1.08999 * 109.47129 * 49.99607 * 12 10 9 44 44 H 0.97010 * 119.99726 * 0.02562 * 15 13 12 45 45 H 0.96999 * 119.99890 * 180.02562 * 19 18 16 46 46 H 1.07994 * 126.12773 * 359.97438 * 25 24 2 47 47 H 1.08000 * 126.03884 * 179.97438 * 26 25 24 48 48 H 1.07996 * 125.90295 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1954 -0.9403 3.6508 9 6 3.5430 -0.3473 4.0670 10 7 4.0328 -1.0390 5.2668 11 6 4.3449 -2.4442 4.9738 12 6 5.1986 -0.3481 5.8339 13 6 5.5211 -0.9329 7.1848 14 8 4.8465 -1.8367 7.6311 15 7 6.5597 -0.4524 7.8966 16 6 6.8534 -0.9847 9.1254 17 1 6.2528 -1.7895 9.5228 18 6 7.9239 -0.4890 9.8595 19 7 8.6545 0.4907 9.3761 20 14 8.3246 -1.2148 11.5334 21 1 9.2795 -2.3401 11.3693 22 1 8.9347 -0.1690 12.3933 23 1 7.0778 -1.7123 12.1684 24 7 2.0184 -0.6906 -1.1961 25 6 1.4403 -1.7559 -1.7894 26 6 2.1963 -2.0923 -2.8601 27 6 3.2730 -1.2018 -2.9236 28 7 3.1642 -0.3575 -1.9300 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.1832 0.6441 2.6221 33 1 1.1227 1.4667 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4775 -0.8150 4.4613 36 1 2.3169 -2.0014 3.4337 37 1 4.2610 -0.4724 3.2565 38 1 3.4216 0.7140 4.2840 39 1 5.1148 -2.4926 4.2037 40 1 4.7049 -2.9330 5.8791 41 1 3.4461 -2.9501 4.6211 42 1 6.0538 -0.4737 5.1699 43 1 4.9750 0.7133 5.9414 44 1 7.0995 0.2702 7.5395 45 1 9.4021 0.8365 9.8884 46 1 0.5362 -2.2511 -1.4674 47 1 2.0025 -2.9048 -3.5447 48 1 4.0566 -1.2075 -3.6668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715515875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:33 Heat of formation + Delta-G solvation = 39.736797 kcal Electronic energy + Delta-G solvation = -28976.965010 eV Core-core repulsion = 24877.215665 eV Total energy + Delta-G solvation = -4099.749345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62930 -40.19887 -38.59661 -36.82614 -35.77988 -34.87789 -33.82122 -31.24707 -30.69629 -30.22618 -29.27789 -27.67700 -27.34083 -25.77752 -24.80718 -23.81972 -21.75750 -21.26579 -20.78969 -19.59123 -19.11768 -17.84034 -17.68004 -17.64178 -16.60405 -16.05612 -15.68711 -15.40816 -15.02429 -14.75529 -14.63289 -14.48914 -14.12643 -13.97284 -13.91288 -13.75350 -13.44961 -13.34498 -13.10949 -13.00586 -12.86243 -12.76436 -12.30037 -12.13008 -12.08271 -11.97860 -11.50205 -11.30413 -11.22022 -10.92201 -10.92053 -10.81409 -10.38121 -10.35223 -10.20653 -9.61216 -9.46456 -9.11150 -8.81832 -8.42528 -7.96861 -7.85563 -6.40340 -3.81079 1.57221 2.01683 2.15828 2.66495 2.67906 3.18695 3.27162 3.33101 3.82860 3.92039 4.01003 4.09105 4.24456 4.29851 4.50122 4.60775 4.70242 4.81666 4.87100 4.89330 5.00388 5.11942 5.15272 5.17450 5.26983 5.28203 5.39530 5.45677 5.55504 5.67961 5.70821 5.78247 5.78989 5.85760 5.96717 6.06467 6.15058 6.29929 6.40979 6.59975 6.67093 6.93714 7.25915 7.37259 7.47161 7.56528 7.73069 8.07784 8.63358 9.19497 9.55955 10.07882 10.77457 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.001885 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.618195 B =14850.937495 C =15267.228206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.145 3.855 3 H 0.127 0.873 4 C 0.499 3.501 5 O -0.514 6.514 6 N -0.610 5.610 7 C 0.068 3.932 8 C 0.119 3.881 9 C 0.041 3.959 10 N -0.515 5.515 11 C 0.021 3.979 12 C 0.047 3.953 13 C 0.445 3.555 14 O -0.577 6.577 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 N -0.356 5.356 25 C 0.068 3.932 26 C -0.274 4.274 27 C 0.048 3.952 28 N -0.292 5.292 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.015 0.985 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.169 0.831 47 H 0.147 0.853 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.261 3.119 -22.805 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.039 3.961 3 H 0.145 0.855 4 C 0.284 3.716 5 O -0.388 6.388 6 N -0.345 5.345 7 C -0.075 4.075 8 C -0.003 4.003 9 C -0.089 4.089 10 N -0.240 5.240 11 C -0.127 4.127 12 C -0.085 4.085 13 C 0.230 3.770 14 O -0.461 6.461 15 N -0.201 5.201 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 N -0.139 5.139 25 C -0.078 4.078 26 C -0.303 4.303 27 C -0.139 4.139 28 N -0.112 5.112 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.186 0.814 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.082 3.156 -21.405 28.197 hybrid contribution 1.003 -0.457 -0.366 1.161 sum -17.079 2.699 -21.771 27.802 Atomic orbital electron populations 1.22431 0.90597 1.04679 1.05416 1.21045 0.96170 0.97593 0.81328 0.85526 1.20755 0.81014 0.85239 0.84567 1.90791 1.36390 1.25700 1.85931 1.47797 1.51319 1.29648 1.05700 1.22106 0.94624 0.86947 1.03808 1.21533 0.95760 0.97620 0.85401 1.22425 0.95973 0.98634 0.91826 1.61540 1.33110 1.02704 1.26605 1.22577 0.99457 0.88855 1.01788 1.21858 0.91924 0.98806 0.95870 1.19705 0.83602 0.86731 0.86924 1.90479 1.51942 1.32162 1.71545 1.41868 1.26841 1.33896 1.17533 1.19695 1.12434 1.17274 0.93342 0.87902 1.25271 0.96185 0.96469 1.00119 1.69618 1.19335 1.26239 1.39173 0.85851 0.78774 0.78332 0.81289 1.20443 1.20948 1.19414 1.48173 1.19952 1.24508 1.21217 1.22400 0.99849 0.90779 0.94775 1.21473 0.99195 1.06291 1.03382 1.23887 0.99046 0.93874 0.97075 1.77375 1.02097 1.24415 1.07287 0.90086 0.90869 0.88255 0.91587 0.89942 0.90914 0.89007 0.89457 0.94811 0.90889 0.96600 0.88516 0.92116 0.93465 0.89473 0.77501 0.91899 0.81376 0.83491 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 8.47 37.16 0.31 -0.41 16 2 C 0.15 1.19 2.93 -69.08 -0.20 0.99 16 3 H 0.13 0.88 7.40 -51.93 -0.38 0.50 16 4 C 0.50 5.60 7.15 -10.98 -0.08 5.52 16 5 O -0.51 -8.29 15.99 5.56 0.09 -8.21 16 6 N -0.61 -5.57 2.87 -181.58 -0.52 -6.10 16 7 C 0.07 0.32 8.80 59.85 0.53 0.84 16 8 C 0.12 1.38 5.33 -4.04 -0.02 1.36 16 9 C 0.04 0.56 5.28 -3.83 -0.02 0.54 16 10 N -0.52 -8.90 4.50 -244.38 -1.10 -10.00 16 11 C 0.02 0.37 8.96 60.06 0.54 0.91 16 12 C 0.05 0.87 5.45 -4.98 -0.03 0.84 16 13 C 0.45 10.67 7.48 -10.99 -0.08 10.59 16 14 O -0.58 -15.64 13.91 5.55 0.08 -15.57 16 15 N -0.56 -14.51 5.29 -10.97 -0.06 -14.57 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 19 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 20 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 N -0.36 -3.85 3.02 -56.00 -0.17 -4.02 16 25 C 0.07 0.63 10.57 -17.22 -0.18 0.45 16 26 C -0.27 -2.54 10.80 -40.01 -0.43 -2.97 16 27 C 0.05 0.50 12.03 -17.36 -0.21 0.29 16 28 N -0.29 -3.71 12.58 30.62 0.39 -3.32 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.32 7.16 -51.93 -0.37 -0.05 16 31 H 0.10 0.22 4.53 -51.93 -0.24 -0.01 16 32 H 0.07 0.19 6.95 -51.93 -0.36 -0.17 16 33 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.07 0.21 6.01 -51.93 -0.31 -0.10 16 35 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.09 1.19 5.83 -51.93 -0.30 0.88 16 37 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 2.01 5.82 -51.93 -0.30 1.71 16 41 H 0.06 0.96 6.47 -51.93 -0.34 0.63 16 42 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 43 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 44 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.17 1.07 7.26 -52.49 -0.38 0.69 16 47 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 48 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -37.14 391.95 -6.82 -43.96 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.02 Total: 8.87 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -0.12 Total: 10.91 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.74 Total: -62.07 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.14 -6.82 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715515875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.694 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds