Wall clock time and date at job start Tue Mar 31 2020 20:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 O 1.21278 * 120.00240 * 120.00385 * 4 2 1 6 6 N 1.34780 * 120.00249 * 300.00184 * 4 2 1 7 7 C 1.46502 * 119.99699 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00188 * 180.02562 * 6 4 2 9 9 C 1.52995 * 109.47101 * 89.99879 * 8 6 4 10 10 N 1.46896 * 109.47267 * 179.97438 * 9 8 6 11 11 C 1.46897 * 111.00112 * 66.04605 * 10 9 8 12 12 C 1.46900 * 111.00503 * 189.99992 * 10 9 8 13 13 C 1.50700 * 109.47440 * 169.99640 * 12 10 9 14 14 O 1.21287 * 120.00243 * 0.02562 * 13 12 10 15 15 N 1.34774 * 120.00100 * 179.97438 * 13 12 10 16 16 C 1.37092 * 120.00187 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00225 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00331 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99626 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00362 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47288 * 89.99808 * 20 18 16 22 22 H 1.48502 * 109.46983 * 210.00500 * 20 18 16 23 23 H 1.48499 * 109.46634 * 330.00007 * 20 18 16 24 24 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 25 25 C 1.34949 * 126.03579 * 325.00408 * 24 2 1 26 26 C 1.35318 * 107.74539 * 179.97438 * 25 24 2 27 27 C 1.39867 * 107.92181 * 359.97438 * 26 25 24 28 28 N 1.30841 * 108.20183 * 359.74201 * 27 26 25 29 29 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.08995 * 109.47386 * 90.00307 * 7 6 4 33 33 H 1.08998 * 109.47238 * 210.00186 * 7 6 4 34 34 H 1.09002 * 109.47312 * 329.99896 * 7 6 4 35 35 H 1.08999 * 109.46628 * 209.99856 * 8 6 4 36 36 H 1.08991 * 109.47048 * 329.99991 * 8 6 4 37 37 H 1.09001 * 109.47582 * 300.00277 * 9 8 6 38 38 H 1.09002 * 109.47604 * 59.99656 * 9 8 6 39 39 H 1.08998 * 109.47456 * 59.99849 * 11 10 9 40 40 H 1.09002 * 109.47598 * 180.02562 * 11 10 9 41 41 H 1.09004 * 109.46985 * 300.00004 * 11 10 9 42 42 H 1.08999 * 109.47174 * 290.00565 * 12 10 9 43 43 H 1.08999 * 109.47129 * 49.99607 * 12 10 9 44 44 H 0.97010 * 119.99726 * 0.02562 * 15 13 12 45 45 H 0.96999 * 119.99890 * 180.02562 * 19 18 16 46 46 H 1.07994 * 126.12773 * 359.97438 * 25 24 2 47 47 H 1.08000 * 126.03884 * 179.97438 * 26 25 24 48 48 H 1.07996 * 125.90295 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1954 -0.9403 3.6508 9 6 3.5430 -0.3473 4.0670 10 7 4.0328 -1.0390 5.2668 11 6 4.3449 -2.4442 4.9738 12 6 5.1986 -0.3481 5.8339 13 6 5.5211 -0.9329 7.1848 14 8 4.8465 -1.8367 7.6311 15 7 6.5597 -0.4524 7.8966 16 6 6.8534 -0.9847 9.1254 17 1 6.2528 -1.7895 9.5228 18 6 7.9239 -0.4890 9.8595 19 7 8.6545 0.4907 9.3761 20 14 8.3246 -1.2148 11.5334 21 1 9.2795 -2.3401 11.3693 22 1 8.9347 -0.1690 12.3933 23 1 7.0778 -1.7123 12.1684 24 7 2.0184 -0.6906 -1.1961 25 6 1.4403 -1.7559 -1.7894 26 6 2.1963 -2.0923 -2.8601 27 6 3.2730 -1.2018 -2.9236 28 7 3.1642 -0.3575 -1.9300 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.1832 0.6441 2.6221 33 1 1.1227 1.4667 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4775 -0.8150 4.4613 36 1 2.3169 -2.0014 3.4337 37 1 4.2610 -0.4724 3.2565 38 1 3.4216 0.7140 4.2840 39 1 5.1148 -2.4926 4.2037 40 1 4.7049 -2.9330 5.8791 41 1 3.4461 -2.9501 4.6211 42 1 6.0538 -0.4737 5.1699 43 1 4.9750 0.7133 5.9414 44 1 7.0995 0.2702 7.5395 45 1 9.4021 0.8365 9.8884 46 1 0.5362 -2.2511 -1.4674 47 1 2.0025 -2.9048 -3.5447 48 1 4.0566 -1.2075 -3.6668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715515875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:32 Heat of formation + Delta-G solvation = 11.294934 kcal Electronic energy + Delta-G solvation = -28978.198342 eV Core-core repulsion = 24877.215665 eV Total energy + Delta-G solvation = -4100.982676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34041 -41.03058 -40.36226 -38.20682 -36.72639 -35.92603 -35.51486 -33.30016 -31.61390 -30.97330 -30.10434 -29.14874 -27.94481 -27.13633 -26.09726 -24.91479 -22.85279 -22.01452 -21.68584 -21.03406 -20.29807 -19.86731 -18.39082 -18.36838 -17.93302 -17.32317 -16.72574 -16.66982 -16.40961 -16.13404 -15.74463 -15.59226 -15.49995 -15.16080 -14.94916 -14.59714 -14.46731 -14.35911 -14.08539 -13.86143 -13.68189 -13.59479 -13.48169 -13.43335 -13.09895 -13.01898 -12.72114 -12.67372 -12.58949 -12.46147 -12.41520 -12.12320 -11.91737 -11.66838 -11.47506 -11.18436 -10.39061 -10.35735 -10.01821 -9.82539 -9.53390 -9.35926 -8.47322 -5.96097 0.84745 1.34217 1.37277 1.39770 1.41180 1.54039 1.92798 1.96489 2.02887 2.28377 2.77463 3.18887 3.23948 3.37823 3.51734 3.74469 3.85633 3.95755 4.03231 4.12407 4.17102 4.25360 4.29849 4.41114 4.46202 4.51336 4.52526 4.56836 4.58891 4.67740 4.70358 4.73981 4.85118 4.86776 4.91121 5.10643 5.11967 5.14365 5.33727 5.40395 5.71972 5.78318 5.98225 6.01940 6.08294 6.24314 6.59107 6.74004 6.94183 7.11712 7.54492 8.10061 8.70142 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.001885 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.618195 B =14850.937495 C =15267.228206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 H 0.138 0.862 4 C 0.495 3.505 5 O -0.574 6.574 6 N -0.602 5.602 7 C 0.056 3.944 8 C 0.126 3.874 9 C 0.049 3.951 10 N -0.524 5.524 11 C 0.030 3.970 12 C 0.057 3.943 13 C 0.443 3.557 14 O -0.612 6.612 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.080 0.920 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.994 3.006 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.272 1.272 24 N -0.365 5.365 25 C 0.061 3.939 26 C -0.285 4.285 27 C 0.037 3.963 28 N -0.339 5.339 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.015 0.985 38 H 0.096 0.904 39 H 0.014 0.986 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.116 0.884 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.195 0.805 47 H 0.169 0.831 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.015 4.511 -23.295 31.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.156 0.844 4 C 0.281 3.719 5 O -0.453 6.453 6 N -0.335 5.335 7 C -0.085 4.085 8 C 0.002 3.998 9 C -0.080 4.080 10 N -0.249 5.249 11 C -0.118 4.118 12 C -0.074 4.074 13 C 0.230 3.770 14 O -0.498 6.498 15 N -0.211 5.211 16 C -0.461 4.461 17 H 0.098 0.902 18 C -0.215 4.215 19 N -0.562 5.562 20 Si 0.818 3.182 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.196 1.196 24 N -0.148 5.148 25 C -0.084 4.084 26 C -0.314 4.314 27 C -0.148 4.148 28 N -0.160 5.160 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.114 0.886 39 H 0.032 0.968 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.212 0.788 47 H 0.186 0.814 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.864 4.607 -21.911 29.931 hybrid contribution 1.504 -0.888 -0.252 1.765 sum -18.360 3.718 -22.162 29.018 Atomic orbital electron populations 1.22479 0.87252 1.05261 1.07243 1.21323 0.98541 0.97172 0.79109 0.84408 1.21382 0.80063 0.84587 0.85833 1.90761 1.39208 1.28484 1.86851 1.47852 1.50953 1.30393 1.04295 1.22505 0.95241 0.85510 1.05247 1.21330 0.95146 0.96489 0.86813 1.22458 0.96360 0.99617 0.89562 1.61524 1.32335 1.02490 1.28519 1.22402 1.00060 0.89482 0.99857 1.21754 0.93062 0.99878 0.92689 1.20641 0.82283 0.85778 0.88310 1.90458 1.52857 1.33589 1.72873 1.41933 1.27613 1.34258 1.17337 1.19665 1.13474 1.17959 0.94991 0.90186 1.26071 0.95446 0.96581 1.03364 1.69680 1.19482 1.26644 1.40417 0.84907 0.78385 0.77950 0.76966 1.19802 1.19482 1.19635 1.48428 1.19592 1.25102 1.21671 1.22949 1.00581 0.90358 0.94550 1.21854 0.98885 1.06728 1.03967 1.24389 0.99833 0.93619 0.96993 1.77281 1.03783 1.26216 1.08707 0.88752 0.90920 0.85844 0.88900 0.89259 0.88705 0.87378 0.91902 0.96635 0.88595 0.96793 0.91927 0.90541 0.92448 0.86625 0.77081 0.91317 0.78782 0.81377 0.77940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.47 71.98 0.61 -0.25 16 2 C 0.14 2.12 2.93 44.25 0.13 2.25 16 3 H 0.14 1.64 7.40 -2.39 -0.02 1.63 16 4 C 0.49 10.62 7.15 87.66 0.63 11.25 16 5 O -0.57 -18.91 15.99 -3.02 -0.05 -18.96 16 6 N -0.60 -9.78 2.87 -846.78 -2.43 -12.21 16 7 C 0.06 0.31 8.80 127.77 1.12 1.44 16 8 C 0.13 2.75 5.33 86.38 0.46 3.21 16 9 C 0.05 1.27 5.28 86.30 0.46 1.73 16 10 N -0.52 -17.83 4.50 -927.07 -4.17 -22.00 16 11 C 0.03 1.09 8.96 127.69 1.14 2.24 16 12 C 0.06 2.10 5.45 85.56 0.47 2.56 16 13 C 0.44 21.57 7.48 87.66 0.66 22.22 16 14 O -0.61 -34.12 13.91 -3.05 -0.04 -34.17 16 15 N -0.57 -30.03 5.29 -306.99 -1.62 -31.66 16 16 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 17 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 18 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 19 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 20 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 N -0.37 -7.64 3.02 -331.07 -1.00 -8.64 16 25 C 0.06 1.08 10.57 83.54 0.88 1.96 16 26 C -0.29 -5.07 10.80 21.99 0.24 -4.83 16 27 C 0.04 0.77 12.03 85.23 1.02 1.80 16 28 N -0.34 -8.65 12.58 -57.03 -0.72 -9.37 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 0.42 7.16 -2.39 -0.02 0.41 16 31 H 0.12 0.01 4.53 -2.39 -0.01 0.00 16 32 H 0.09 0.09 6.95 -2.39 -0.02 0.07 16 33 H 0.09 0.45 8.07 -2.39 -0.02 0.43 16 34 H 0.09 0.15 6.01 -2.39 -0.01 0.14 16 35 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 36 H 0.06 1.71 5.83 -2.39 -0.01 1.70 16 37 H 0.02 0.47 8.12 -2.39 -0.02 0.45 16 38 H 0.10 2.06 7.93 -2.39 -0.02 2.05 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 2.71 5.82 -2.39 -0.01 2.70 16 41 H 0.08 2.48 6.47 -2.39 -0.02 2.47 16 42 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 43 H 0.12 3.58 7.93 -2.39 -0.02 3.56 16 44 H 0.40 19.72 7.90 -92.70 -0.73 18.98 16 45 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 46 H 0.20 2.12 7.26 -2.91 -0.02 2.10 16 47 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 48 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -84.17 391.95 1.63 -82.54 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.26 Total: 32.09 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 9.10 Total: 27.00 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -9.66 Total: -133.92 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.09 Total: -53.13 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -84.17 1.63 -82.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715515875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.831 kcal (2) G-P(sol) polarization free energy of solvation -84.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds