Wall clock time and date at job start Tue Mar 31 2020 20:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47477 * 2 1 4 4 C 1.35852 * 126.13584 * 269.97822 * 3 2 1 5 5 N 1.30172 * 109.00101 * 179.76070 * 4 3 2 6 6 C 1.35761 * 108.86994 * 0.41251 * 5 4 3 7 7 C 1.47318 * 126.23594 * 179.85687 * 6 5 4 8 8 O 1.21633 * 119.99968 * 173.61689 * 7 6 5 9 9 N 1.34777 * 120.00239 * 353.34534 * 7 6 5 10 10 C 1.46495 * 119.99885 * 354.75510 * 9 7 6 11 11 C 1.46500 * 120.00116 * 174.76223 * 9 7 6 12 12 C 1.52999 * 109.47197 * 89.99400 * 11 9 7 13 13 N 1.46899 * 109.47059 * 179.97438 * 12 11 9 14 14 C 1.46901 * 111.00061 * 66.05089 * 13 12 11 15 15 C 1.46904 * 111.00316 * 190.00230 * 13 12 11 16 16 C 1.50694 * 109.47450 * 170.00441 * 15 13 12 17 17 O 1.21296 * 120.00187 * 359.97438 * 16 15 13 18 18 N 1.34773 * 120.00314 * 180.02562 * 16 15 13 19 19 C 1.37095 * 120.00505 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99620 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00343 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00007 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00052 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47105 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47483 * 119.99887 * 23 21 19 26 26 H 1.48503 * 109.47037 * 239.99792 * 23 21 19 27 27 C 1.35379 * 126.13360 * 89.99419 * 3 2 1 28 28 H 1.08998 * 109.46981 * 300.00018 * 1 2 3 29 29 H 1.09001 * 109.47387 * 59.99622 * 1 2 3 30 30 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46981 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.46898 * 120.00307 * 2 1 3 33 33 H 1.07994 * 125.49773 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47067 * 85.32079 * 10 9 7 35 35 H 1.08998 * 109.47705 * 205.32371 * 10 9 7 36 36 H 1.09004 * 109.47231 * 325.32721 * 10 9 7 37 37 H 1.08997 * 109.46686 * 209.99548 * 11 9 7 38 38 H 1.09004 * 109.47065 * 329.99520 * 11 9 7 39 39 H 1.08991 * 109.47323 * 300.00116 * 12 11 9 40 40 H 1.09004 * 109.47014 * 60.00090 * 12 11 9 41 41 H 1.09007 * 109.47152 * 59.99483 * 14 13 12 42 42 H 1.08994 * 109.47739 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.46954 * 300.00063 * 14 13 12 44 44 H 1.09005 * 109.46804 * 290.00435 * 15 13 12 45 45 H 1.08999 * 109.46699 * 49.99834 * 15 13 12 46 46 H 0.97006 * 119.99914 * 359.97438 * 18 16 15 47 47 H 0.97000 * 119.99773 * 179.97438 * 22 21 19 48 48 H 1.07997 * 126.56835 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2859 2.1363 -1.0972 5 7 2.6956 3.3108 -0.7137 6 6 2.7143 3.3479 0.6433 7 6 3.1187 4.4926 1.4777 8 8 2.9824 4.4432 2.6854 9 7 3.6449 5.5926 0.9035 10 6 3.9213 5.6068 -0.5351 11 6 3.9405 6.7739 1.7179 12 6 5.3713 6.6804 2.2516 13 7 5.6679 7.8652 3.0678 14 6 4.8426 7.8876 4.2828 15 6 7.0972 7.9307 3.4010 16 6 7.4077 9.2687 4.0209 17 8 6.5254 10.0875 4.1700 18 7 8.6661 9.5560 4.4087 19 6 8.9487 10.7734 4.9722 20 1 8.1630 11.5025 5.1049 21 6 10.2460 11.0693 5.3725 22 7 11.2019 10.1821 5.2114 23 14 10.6309 12.7279 6.1408 24 1 9.3902 13.5410 6.2106 25 1 11.1688 12.5262 7.5102 26 1 11.6398 13.4353 5.3119 27 6 2.2844 2.1338 1.0934 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1724 1.8155 -2.1221 34 1 3.0183 5.8901 -1.0758 35 1 4.7121 6.3267 -0.7461 36 1 4.2392 4.6140 -0.8538 37 1 3.8384 7.6709 1.1073 38 1 3.2432 6.8223 2.5543 39 1 5.4735 5.7833 2.8622 40 1 6.0687 6.6319 1.4152 41 1 5.0444 6.9954 4.8756 42 1 5.0819 8.7752 4.8684 43 1 3.7886 7.9090 4.0057 44 1 7.3422 7.1374 4.1073 45 1 7.6879 7.8046 2.4937 46 1 9.3718 8.9013 4.2892 47 1 12.1076 10.3889 5.4905 48 1 2.1776 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715537374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:30 Heat of formation + Delta-G solvation = 14.276098 kcal Electronic energy + Delta-G solvation = -28447.544469 eV Core-core repulsion = 24346.691065 eV Total energy + Delta-G solvation = -4100.853403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59515 -39.61989 -38.45964 -36.58810 -35.63277 -35.12156 -33.75844 -31.18814 -30.99087 -30.43500 -29.34427 -27.55975 -26.65520 -25.51068 -24.61945 -23.94591 -22.59488 -21.40010 -20.90031 -19.45063 -19.03105 -17.80797 -17.73948 -16.60048 -16.30779 -16.22129 -15.85632 -15.24702 -15.09515 -14.94889 -14.66443 -14.48298 -14.23249 -14.19238 -13.87462 -13.68483 -13.41583 -13.18518 -13.00903 -12.89591 -12.78243 -12.65932 -12.29941 -12.04924 -11.98302 -11.83300 -11.44198 -11.22044 -11.10264 -10.85306 -10.61925 -10.48035 -10.28827 -10.19173 -10.15959 -9.96769 -9.41573 -9.04011 -8.66005 -8.29644 -7.89795 -7.73729 -6.35037 -3.75446 1.29909 2.09517 2.16005 2.98542 3.21291 3.31335 3.38751 3.39183 3.94728 3.99401 4.04323 4.17548 4.23430 4.30561 4.40310 4.50371 4.68659 4.89895 4.94418 5.05222 5.13638 5.24140 5.27035 5.32795 5.35159 5.35471 5.63916 5.65799 5.67315 5.81012 5.85633 5.90108 5.96146 6.07765 6.10937 6.14092 6.19654 6.37706 6.51081 6.65127 6.71467 7.31042 7.39862 7.47136 7.52947 7.62055 8.14252 8.17673 8.69794 9.25494 9.62531 10.14876 10.82987 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034885 B = 0.001669 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.451407 B =16767.571179 C =16778.644245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.181 3.819 5 N -0.458 5.458 6 C -0.059 4.059 7 C 0.599 3.401 8 O -0.544 6.544 9 N -0.602 5.602 10 C 0.088 3.912 11 C 0.121 3.879 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.021 3.979 15 C 0.047 3.953 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.296 4.296 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.034 3.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.210 0.790 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.016 0.984 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.505 -24.641 -15.039 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.139 5.139 4 C -0.102 4.102 5 N -0.177 5.177 6 C -0.187 4.187 7 C 0.387 3.613 8 O -0.421 6.421 9 N -0.334 5.334 10 C -0.055 4.055 11 C -0.002 4.002 12 C -0.087 4.087 13 N -0.241 5.241 14 C -0.127 4.127 15 C -0.084 4.084 16 C 0.232 3.768 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.104 4.104 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.226 0.774 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.034 0.966 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.903 -23.119 -15.052 33.442 hybrid contribution 0.777 -1.143 1.075 1.751 sum -18.127 -24.261 -13.977 33.355 Atomic orbital electron populations 1.22182 0.93697 1.03504 1.03556 1.21975 0.95935 0.79308 1.05189 1.45554 1.48353 1.13172 1.06854 1.25278 1.03608 0.87695 0.93637 1.70842 1.17836 1.18710 1.10324 1.20551 1.12152 0.95511 0.90522 1.16992 0.77057 0.81152 0.86148 1.90811 1.56537 1.81107 1.13656 1.47631 1.61950 1.13961 1.09833 1.21970 1.00801 1.03713 0.78982 1.21491 0.96440 0.86463 0.95816 1.22434 0.96918 0.91854 0.97520 1.61533 1.04458 1.37910 1.20178 1.22572 0.97004 1.01767 0.91317 1.21852 0.89263 0.96961 1.00366 1.19748 0.83723 0.88923 0.84423 1.90482 1.46007 1.49887 1.59647 1.41874 1.07735 1.16525 1.54204 1.19757 0.94809 0.92684 1.35352 0.87857 1.25251 0.95301 0.99440 0.98056 1.69628 1.01747 1.34928 1.48181 0.85805 0.78561 0.81590 0.78408 1.19227 1.20849 1.20816 1.22588 1.02725 0.91868 0.93264 0.91599 0.91593 0.90240 0.88355 0.88631 0.77394 0.92511 0.91775 0.89395 0.89350 0.89728 0.94655 0.91004 0.96595 0.88686 0.92034 0.93509 0.89497 0.77520 0.92021 0.79671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.31 10.24 37.16 0.38 0.07 16 2 C 0.10 0.19 6.84 -4.04 -0.03 0.16 16 3 N -0.46 -2.63 2.73 -118.37 -0.32 -2.96 16 4 C 0.18 1.16 12.55 -89.90 -1.13 0.03 16 5 N -0.46 -4.53 8.05 -11.03 -0.09 -4.62 16 6 C -0.06 -0.68 6.58 -83.09 -0.55 -1.22 16 7 C 0.60 8.54 7.65 -12.57 -0.10 8.44 16 8 O -0.54 -9.29 16.53 5.25 0.09 -9.20 16 9 N -0.60 -7.88 2.87 -182.89 -0.53 -8.40 16 10 C 0.09 0.92 9.30 59.84 0.56 1.48 16 11 C 0.12 1.69 5.27 -4.04 -0.02 1.67 16 12 C 0.04 0.65 5.28 -3.82 -0.02 0.63 16 13 N -0.52 -9.50 4.50 -244.37 -1.10 -10.60 16 14 C 0.02 0.39 8.96 60.07 0.54 0.93 16 15 C 0.05 0.91 5.45 -4.98 -0.03 0.89 16 16 C 0.45 10.99 7.47 -10.99 -0.08 10.91 16 17 O -0.58 -16.01 13.91 5.54 0.08 -15.93 16 18 N -0.57 -14.84 5.29 -10.97 -0.06 -14.90 16 19 C -0.30 -8.47 9.68 -14.94 -0.14 -8.61 16 20 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.13 13.05 55.50 0.72 -24.41 16 23 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.03 0.30 11.27 -16.64 -0.19 0.11 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.10 0.00 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.21 0.51 8.06 -52.49 -0.42 0.08 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.09 0.92 5.86 -51.93 -0.30 0.62 16 37 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 38 H 0.08 1.30 5.92 -51.93 -0.31 0.99 16 39 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 41 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 2.03 5.83 -51.93 -0.30 1.73 16 43 H 0.06 1.02 6.47 -51.93 -0.34 0.69 16 44 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 45 H 0.09 1.52 7.93 -51.93 -0.41 1.11 16 46 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -36.21 398.58 -8.52 -44.73 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.39 Total: 7.84 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -0.90 Total: 15.96 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -1.37 Total: -65.89 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.16 Total: -25.14 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.21 -8.52 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715537374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.006 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds