Wall clock time and date at job start Tue Mar 31 2020 20:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47477 * 2 1 4 4 C 1.35852 * 126.13584 * 269.97822 * 3 2 1 5 5 N 1.30172 * 109.00101 * 179.76070 * 4 3 2 6 6 C 1.35761 * 108.86994 * 0.41251 * 5 4 3 7 7 C 1.47318 * 126.23594 * 179.85687 * 6 5 4 8 8 O 1.21633 * 119.99968 * 173.61689 * 7 6 5 9 9 N 1.34777 * 120.00239 * 353.34534 * 7 6 5 10 10 C 1.46495 * 119.99885 * 354.75510 * 9 7 6 11 11 C 1.46500 * 120.00116 * 174.76223 * 9 7 6 12 12 C 1.52999 * 109.47197 * 89.99400 * 11 9 7 13 13 N 1.46899 * 109.47059 * 179.97438 * 12 11 9 14 14 C 1.46901 * 111.00061 * 66.05089 * 13 12 11 15 15 C 1.46904 * 111.00316 * 190.00230 * 13 12 11 16 16 C 1.50694 * 109.47450 * 170.00441 * 15 13 12 17 17 O 1.21296 * 120.00187 * 359.97438 * 16 15 13 18 18 N 1.34773 * 120.00314 * 180.02562 * 16 15 13 19 19 C 1.37095 * 120.00505 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99620 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00343 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00007 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00052 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47105 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47483 * 119.99887 * 23 21 19 26 26 H 1.48503 * 109.47037 * 239.99792 * 23 21 19 27 27 C 1.35379 * 126.13360 * 89.99419 * 3 2 1 28 28 H 1.08998 * 109.46981 * 300.00018 * 1 2 3 29 29 H 1.09001 * 109.47387 * 59.99622 * 1 2 3 30 30 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46981 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.46898 * 120.00307 * 2 1 3 33 33 H 1.07994 * 125.49773 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47067 * 85.32079 * 10 9 7 35 35 H 1.08998 * 109.47705 * 205.32371 * 10 9 7 36 36 H 1.09004 * 109.47231 * 325.32721 * 10 9 7 37 37 H 1.08997 * 109.46686 * 209.99548 * 11 9 7 38 38 H 1.09004 * 109.47065 * 329.99520 * 11 9 7 39 39 H 1.08991 * 109.47323 * 300.00116 * 12 11 9 40 40 H 1.09004 * 109.47014 * 60.00090 * 12 11 9 41 41 H 1.09007 * 109.47152 * 59.99483 * 14 13 12 42 42 H 1.08994 * 109.47739 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.46954 * 300.00063 * 14 13 12 44 44 H 1.09005 * 109.46804 * 290.00435 * 15 13 12 45 45 H 1.08999 * 109.46699 * 49.99834 * 15 13 12 46 46 H 0.97006 * 119.99914 * 359.97438 * 18 16 15 47 47 H 0.97000 * 119.99773 * 179.97438 * 22 21 19 48 48 H 1.07997 * 126.56835 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2859 2.1363 -1.0972 5 7 2.6956 3.3108 -0.7137 6 6 2.7143 3.3479 0.6433 7 6 3.1187 4.4926 1.4777 8 8 2.9824 4.4432 2.6854 9 7 3.6449 5.5926 0.9035 10 6 3.9213 5.6068 -0.5351 11 6 3.9405 6.7739 1.7179 12 6 5.3713 6.6804 2.2516 13 7 5.6679 7.8652 3.0678 14 6 4.8426 7.8876 4.2828 15 6 7.0972 7.9307 3.4010 16 6 7.4077 9.2687 4.0209 17 8 6.5254 10.0875 4.1700 18 7 8.6661 9.5560 4.4087 19 6 8.9487 10.7734 4.9722 20 1 8.1630 11.5025 5.1049 21 6 10.2460 11.0693 5.3725 22 7 11.2019 10.1821 5.2114 23 14 10.6309 12.7279 6.1408 24 1 9.3902 13.5410 6.2106 25 1 11.1688 12.5262 7.5102 26 1 11.6398 13.4353 5.3119 27 6 2.2844 2.1338 1.0934 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1724 1.8155 -2.1221 34 1 3.0183 5.8901 -1.0758 35 1 4.7121 6.3267 -0.7461 36 1 4.2392 4.6140 -0.8538 37 1 3.8384 7.6709 1.1073 38 1 3.2432 6.8223 2.5543 39 1 5.4735 5.7833 2.8622 40 1 6.0687 6.6319 1.4152 41 1 5.0444 6.9954 4.8756 42 1 5.0819 8.7752 4.8684 43 1 3.7886 7.9090 4.0057 44 1 7.3422 7.1374 4.1073 45 1 7.6879 7.8046 2.4937 46 1 9.3718 8.9013 4.2892 47 1 12.1076 10.3889 5.4905 48 1 2.1776 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715537374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:29 Heat of formation + Delta-G solvation = -10.549892 kcal Electronic energy + Delta-G solvation = -28448.621004 eV Core-core repulsion = 24346.691065 eV Total energy + Delta-G solvation = -4101.929939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.17495 -40.73235 -40.24591 -38.09223 -36.51359 -35.93224 -35.71589 -33.27521 -31.66033 -31.20151 -30.25905 -29.13217 -27.65641 -27.00589 -25.94066 -24.63707 -23.55381 -22.25991 -21.77898 -21.00209 -20.26738 -19.83821 -18.44228 -17.89393 -17.55358 -17.14479 -16.85372 -16.56683 -16.48800 -16.13269 -15.84032 -15.60123 -15.49940 -15.11921 -14.98301 -14.85162 -14.62424 -14.29955 -14.07591 -13.88294 -13.74794 -13.55930 -13.44526 -13.22781 -13.05914 -12.98878 -12.86363 -12.60119 -12.53862 -12.38327 -12.18708 -12.10149 -11.85839 -11.45711 -11.34026 -10.88355 -10.66408 -10.32689 -9.99087 -9.84462 -9.49939 -9.28064 -8.45242 -5.93878 0.55611 1.37562 1.42491 1.47034 1.57112 1.68547 2.03451 2.05741 2.30976 2.49794 2.85617 3.21254 3.37919 3.43289 3.75139 3.88499 3.92134 4.05265 4.11369 4.16865 4.23546 4.35488 4.42230 4.43275 4.45546 4.48857 4.51346 4.59728 4.62047 4.70342 4.79974 4.82031 4.85299 4.95161 5.09411 5.15084 5.17211 5.23923 5.42622 5.43902 5.57544 5.84364 6.03599 6.12258 6.14435 6.40201 6.61931 6.81246 7.14275 7.18058 7.57226 8.13170 8.72560 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034885 B = 0.001669 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.451407 B =16767.571179 C =16778.644245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.195 3.805 5 N -0.485 5.485 6 C -0.095 4.095 7 C 0.591 3.409 8 O -0.585 6.585 9 N -0.602 5.602 10 C 0.093 3.907 11 C 0.126 3.874 12 C 0.053 3.947 13 N -0.528 5.528 14 C 0.029 3.971 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.039 3.961 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.089 0.911 41 H 0.020 0.980 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.113 0.887 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.465 -26.557 -16.931 36.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.089 4.089 5 N -0.204 5.204 6 C -0.223 4.223 7 C 0.380 3.620 8 O -0.466 6.466 9 N -0.333 5.333 10 C -0.049 4.049 11 C 0.003 3.997 12 C -0.076 4.076 13 N -0.252 5.252 14 C -0.119 4.119 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.498 6.498 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.103 4.103 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.266 0.734 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.131 0.869 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -18.859 -25.078 -16.987 35.681 hybrid contribution 0.682 -0.674 1.589 1.856 sum -18.177 -25.752 -15.398 35.081 Atomic orbital electron populations 1.22162 0.93579 1.04384 1.02473 1.22326 0.95915 0.77263 1.07175 1.45801 1.47173 1.14264 1.05731 1.26077 1.01084 0.86614 0.95164 1.70747 1.19504 1.20796 1.09387 1.20327 1.14967 0.95605 0.91404 1.17481 0.76468 0.81951 0.86051 1.90767 1.58392 1.82046 1.15426 1.47720 1.61540 1.13349 1.10709 1.22039 1.01319 1.04212 0.77315 1.21339 0.95179 0.87451 0.95711 1.22402 0.98088 0.89928 0.97190 1.61507 1.03760 1.39744 1.20232 1.22420 0.97916 1.00267 0.91299 1.21748 0.90408 0.93806 1.01379 1.20653 0.82691 0.90378 0.83205 1.90461 1.46881 1.51681 1.60764 1.41927 1.08493 1.16118 1.54634 1.19718 0.95059 0.93628 1.37722 0.90231 1.26049 0.94590 1.02907 0.97779 1.69688 1.02167 1.36337 1.48079 0.84851 0.78150 0.77194 0.78000 1.19786 1.19674 1.19533 1.22694 1.01686 0.91529 0.94359 0.93458 0.91867 0.88387 0.85422 0.87683 0.73362 0.92144 0.90620 0.89188 0.88369 0.91462 0.95689 0.89279 0.96158 0.91920 0.90642 0.92045 0.86920 0.77066 0.91341 0.79201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.21 10.24 71.98 0.74 0.52 16 2 C 0.09 0.07 6.84 86.38 0.59 0.66 16 3 N -0.45 -4.16 2.73 -528.40 -1.44 -5.60 16 4 C 0.19 1.97 12.55 180.10 2.26 4.23 16 5 N -0.49 -8.93 8.05 -188.82 -1.52 -10.45 16 6 C -0.10 -2.18 6.58 40.50 0.27 -1.92 16 7 C 0.59 17.21 7.65 86.63 0.66 17.87 16 8 O -0.59 -20.84 16.53 -4.14 -0.07 -20.90 16 9 N -0.60 -15.67 2.87 -850.78 -2.44 -18.12 16 10 C 0.09 1.84 9.30 127.77 1.19 3.03 16 11 C 0.13 3.54 5.27 86.38 0.46 3.99 16 12 C 0.05 1.58 5.28 86.30 0.46 2.03 16 13 N -0.53 -19.28 4.50 -927.05 -4.17 -23.45 16 14 C 0.03 1.09 8.96 127.69 1.14 2.24 16 15 C 0.06 2.21 5.45 85.55 0.47 2.67 16 16 C 0.44 22.21 7.47 87.66 0.66 22.87 16 17 O -0.61 -35.06 13.91 -3.08 -0.04 -35.10 16 18 N -0.57 -30.63 5.29 -306.99 -1.62 -32.25 16 19 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 20 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.87 13.05 21.66 0.28 -50.59 16 23 Si 0.99 43.97 29.55 68.60 2.03 46.00 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 C 0.04 0.65 11.27 83.72 0.94 1.60 16 28 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.25 0.14 8.06 -2.91 -0.02 0.11 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 36 H 0.09 1.79 5.86 -2.38 -0.01 1.78 16 37 H 0.10 2.53 8.07 -2.39 -0.02 2.51 16 38 H 0.07 2.12 5.92 -2.38 -0.01 2.11 16 39 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 40 H 0.09 2.36 7.93 -2.38 -0.02 2.34 16 41 H 0.02 0.72 8.14 -2.38 -0.02 0.71 16 42 H 0.06 2.78 5.83 -2.39 -0.01 2.77 16 43 H 0.07 2.58 6.47 -2.39 -0.02 2.56 16 44 H 0.06 2.19 8.12 -2.38 -0.02 2.18 16 45 H 0.11 3.74 7.93 -2.39 -0.02 3.72 16 46 H 0.40 20.08 7.90 -92.70 -0.73 19.34 16 47 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -80.80 398.58 2.35 -78.45 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.24 Total: 31.04 kcal Atomic # 6 Polarization: 29.86 SS G_CDS: 11.11 Total: 40.96 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -10.92 Total: -140.45 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -0.11 Total: -56.00 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -80.80 2.35 -78.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715537374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.905 kcal (2) G-P(sol) polarization free energy of solvation -80.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds