Wall clock time and date at job start Tue Mar 31 2020 20:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46902 * 109.46534 * 175.00072 * 4 2 1 6 6 C 1.46907 * 110.99776 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46914 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00563 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 5 10 10 C 1.37107 * 119.99906 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99254 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00293 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99998 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99599 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47280 * 90.00005 * 14 12 10 16 16 H 1.48505 * 109.47000 * 210.00048 * 14 12 10 17 17 H 1.48496 * 109.47304 * 329.99765 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 C 1.50700 * 109.47208 * 180.02562 * 22 21 19 24 24 C 1.39861 * 125.89850 * 124.71746 * 23 22 21 25 25 C 1.35319 * 107.92141 * 179.86203 * 24 23 22 26 26 N 1.34946 * 107.74376 * 0.39205 * 25 24 23 27 27 C 1.46500 * 126.03747 * 179.75027 * 26 25 24 28 28 N 1.30835 * 125.89510 * 305.02237 * 23 22 21 29 29 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 30 30 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 31 31 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 33 33 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 34 34 H 1.00896 * 111.00427 * 56.05228 * 5 4 2 35 35 H 1.08998 * 109.46749 * 299.99469 * 6 5 4 36 36 H 1.08998 * 109.47510 * 59.99863 * 6 5 4 37 37 H 0.96996 * 120.00640 * 0.02562 * 9 7 6 38 38 H 0.97004 * 119.99617 * 179.97438 * 13 12 10 39 39 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 41 41 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 42 42 H 1.09000 * 109.46887 * 300.00372 * 22 21 19 43 43 H 1.08998 * 109.46846 * 59.99549 * 22 21 19 44 44 H 1.08003 * 126.04099 * 359.97438 * 24 23 22 45 45 H 1.08001 * 126.12964 * 180.14418 * 25 24 23 46 46 H 1.09001 * 109.47046 * 269.97639 * 27 26 25 47 47 H 1.08996 * 109.47158 * 29.97787 * 27 26 25 48 48 H 1.08996 * 109.47122 * 149.97729 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.0302 -1.5157 2.3765 7 6 5.5315 -1.6052 2.2805 8 8 6.1066 -1.1404 1.3191 9 7 6.2351 -2.2011 3.2635 10 6 7.6010 -2.2831 3.1760 11 1 8.1129 -1.8698 2.3195 12 6 8.3264 -2.8978 4.1891 13 7 9.6355 -2.9759 4.1054 14 14 7.4408 -3.6131 5.6701 15 1 7.0905 -5.0308 5.4002 16 1 8.3268 -3.5400 6.8596 17 1 6.2011 -2.8373 5.9279 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 6 2.7122 0.2568 -4.7558 23 6 3.2198 -0.4523 -5.9848 24 6 2.5710 -0.5151 -7.2222 25 6 3.3470 -1.2374 -8.0632 26 7 4.4438 -1.6254 -7.3795 27 6 5.5472 -2.4325 -7.9064 28 7 4.3410 -1.1203 -6.0769 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -0.1581 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.9280 0.0826 1.0826 35 1 3.7556 -0.9585 3.2721 36 1 3.6094 -2.5197 2.4299 37 1 5.7754 -2.5726 4.0325 38 1 10.1420 -3.4047 4.8129 39 1 2.2491 -1.6319 -1.1524 40 1 3.6539 -1.1197 -3.3923 41 1 1.9842 -1.5494 -3.8349 42 1 1.7138 0.6491 -4.9494 43 1 3.3834 1.0788 -4.5068 44 1 1.6195 -0.0650 -7.4644 45 1 3.1261 -1.4660 -9.0954 46 1 5.3348 -3.4890 -7.7429 47 1 5.6567 -2.2449 -8.9745 48 1 6.4708 -2.1639 -7.3938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715979598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:39 Heat of formation + Delta-G solvation = 3.279205 kcal Electronic energy + Delta-G solvation = -27986.812056 eV Core-core repulsion = 23885.481791 eV Total energy + Delta-G solvation = -4101.330264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35685 -39.78672 -38.48321 -36.77333 -34.71059 -34.28427 -33.68904 -32.21269 -31.65810 -30.86202 -30.10900 -27.74846 -27.17970 -25.09134 -24.40891 -23.08758 -21.47422 -21.22959 -20.32468 -19.61475 -19.36638 -18.35006 -17.39291 -16.81230 -16.63768 -15.91275 -15.68115 -15.51221 -15.18697 -14.89236 -14.54203 -14.35503 -14.02682 -13.98493 -13.92043 -13.47793 -13.35004 -13.19271 -12.96194 -12.77806 -12.67278 -12.43044 -12.26859 -12.19518 -12.04121 -12.00919 -11.71235 -11.66380 -11.31191 -11.16234 -10.95129 -10.63773 -10.60008 -9.97542 -9.78603 -9.57207 -9.38059 -8.98455 -8.75795 -8.59808 -8.20833 -8.16009 -6.30863 -3.82311 1.69129 2.31459 2.59108 2.75944 3.01860 3.06273 3.14519 3.27168 3.74159 4.04049 4.10465 4.26154 4.51717 4.66102 4.75073 4.84042 4.86306 4.92999 4.95791 5.08285 5.11750 5.16522 5.20545 5.27333 5.39680 5.40938 5.53823 5.54860 5.58688 5.61228 5.61792 5.73984 5.79048 5.91697 5.91925 5.99728 6.01180 6.06244 6.48429 6.57298 6.79419 7.03877 7.52171 7.56017 7.58346 7.63160 8.14914 8.34085 8.59971 8.95383 9.42625 9.83041 10.82313 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009790 B = 0.002204 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.400636 B =12701.673909 C =15176.084744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.562 6.562 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.040 3.960 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.709 5.709 19 C 0.518 3.482 20 O -0.551 6.551 21 C -0.135 4.135 22 C -0.020 4.020 23 C 0.075 3.925 24 C -0.269 4.269 25 C 0.050 3.950 26 N -0.378 5.378 27 C 0.101 3.899 28 N -0.288 5.288 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.353 0.647 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.406 0.594 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.147 0.853 45 H 0.172 0.828 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.847 0.514 -18.106 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.444 6.444 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.360 5.360 19 C 0.305 3.695 20 O -0.430 6.430 21 C -0.175 4.175 22 C -0.060 4.060 23 C -0.091 4.091 24 C -0.299 4.299 25 C -0.096 4.096 26 N -0.160 5.160 27 C -0.041 4.041 28 N -0.110 5.110 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.172 0.828 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.241 0.759 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.165 0.835 45 H 0.189 0.811 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.255 0.548 -18.551 26.033 hybrid contribution -1.145 -0.357 1.501 1.921 sum -19.400 0.191 -17.051 25.829 Atomic orbital electron populations 1.22134 0.95082 1.02132 1.02578 1.20915 0.93514 0.97535 0.84130 0.89584 1.22317 0.89331 1.00696 0.95857 1.60044 1.03208 1.27071 1.39610 1.21711 0.95048 1.00023 0.91698 1.19713 0.87957 0.84106 0.84742 1.90581 1.70974 1.50320 1.32526 1.42210 1.07871 1.53166 1.19839 1.19435 0.79583 1.35920 1.08377 0.86295 1.25044 0.95449 0.97691 0.98051 1.69625 1.05072 1.43338 1.34116 0.86662 0.79605 0.79986 0.83050 1.19620 1.20205 1.19561 1.45841 1.66773 1.14462 1.08899 1.20590 0.76980 0.87196 0.84720 1.90676 1.50869 1.16047 1.85372 1.21596 1.04089 0.99340 0.92486 1.19727 1.02238 0.96311 0.87684 1.22369 0.92623 0.97722 0.96430 1.21425 1.04064 1.10729 0.93657 1.22521 0.88651 0.99448 0.99017 1.48558 1.17352 1.41549 1.08580 1.21862 0.88426 0.94500 0.99268 1.77420 1.20274 1.16672 0.96668 0.91745 0.91835 0.92397 0.93954 0.90487 0.82756 0.93748 0.89488 0.79726 0.91628 0.75944 0.87887 0.89117 0.89326 0.89322 0.83546 0.81086 0.90709 0.89610 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.14 1.56 2.81 -67.93 -0.19 1.37 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C 0.05 0.51 5.24 -3.82 -0.02 0.49 16 5 N -0.67 -9.81 5.85 -115.05 -0.67 -10.48 16 6 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 7 C 0.45 10.12 7.82 -10.99 -0.09 10.04 16 8 O -0.56 -15.15 15.78 5.55 0.09 -15.06 16 9 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 10 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 11 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 14 Si 0.88 19.36 27.74 -169.99 -4.71 14.64 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 18 N -0.71 -7.99 4.80 -53.80 -0.26 -8.25 16 19 C 0.52 6.60 7.79 -10.98 -0.09 6.51 16 20 O -0.55 -8.69 15.64 5.55 0.09 -8.60 16 21 C -0.13 -1.46 5.66 -27.88 -0.16 -1.62 16 22 C -0.02 -0.22 5.08 -27.88 -0.14 -0.36 16 23 C 0.08 0.88 6.49 -82.41 -0.53 0.34 16 24 C -0.27 -2.57 10.72 -40.01 -0.43 -3.00 16 25 C 0.05 0.41 11.49 -17.22 -0.20 0.21 16 26 N -0.38 -3.78 4.01 -68.16 -0.27 -4.05 16 27 C 0.10 0.60 11.47 59.85 0.69 1.29 16 28 N -0.29 -3.77 12.54 33.67 0.42 -3.35 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.35 5.76 8.43 -39.29 -0.33 5.42 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.41 4.17 8.60 -40.82 -0.35 3.82 16 40 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 44 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 45 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -37.21 408.11 -7.16 -44.37 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -7.63 Total: 16.69 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.08 Total: 7.14 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -0.06 Total: -65.33 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.17 Total: -23.66 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.21 -7.16 -44.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715979598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.650 kcal (2) G-P(sol) polarization free energy of solvation -37.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds