Wall clock time and date at job start Tue Mar 31 2020 20:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46902 * 109.46534 * 175.00072 * 4 2 1 6 6 C 1.46907 * 110.99776 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46914 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00563 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 5 10 10 C 1.37107 * 119.99906 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99254 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00293 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99998 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99599 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47280 * 90.00005 * 14 12 10 16 16 H 1.48505 * 109.47000 * 210.00048 * 14 12 10 17 17 H 1.48496 * 109.47304 * 329.99765 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 C 1.50700 * 109.47208 * 180.02562 * 22 21 19 24 24 C 1.39861 * 125.89850 * 124.71746 * 23 22 21 25 25 C 1.35319 * 107.92141 * 179.86203 * 24 23 22 26 26 N 1.34946 * 107.74376 * 0.39205 * 25 24 23 27 27 C 1.46500 * 126.03747 * 179.75027 * 26 25 24 28 28 N 1.30835 * 125.89510 * 305.02237 * 23 22 21 29 29 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 30 30 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 31 31 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 33 33 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 34 34 H 1.00896 * 111.00427 * 56.05228 * 5 4 2 35 35 H 1.08998 * 109.46749 * 299.99469 * 6 5 4 36 36 H 1.08998 * 109.47510 * 59.99863 * 6 5 4 37 37 H 0.96996 * 120.00640 * 0.02562 * 9 7 6 38 38 H 0.97004 * 119.99617 * 179.97438 * 13 12 10 39 39 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 41 41 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 42 42 H 1.09000 * 109.46887 * 300.00372 * 22 21 19 43 43 H 1.08998 * 109.46846 * 59.99549 * 22 21 19 44 44 H 1.08003 * 126.04099 * 359.97438 * 24 23 22 45 45 H 1.08001 * 126.12964 * 180.14418 * 25 24 23 46 46 H 1.09001 * 109.47046 * 269.97639 * 27 26 25 47 47 H 1.08996 * 109.47158 * 29.97787 * 27 26 25 48 48 H 1.08996 * 109.47122 * 149.97729 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.0302 -1.5157 2.3765 7 6 5.5315 -1.6052 2.2805 8 8 6.1066 -1.1404 1.3191 9 7 6.2351 -2.2011 3.2635 10 6 7.6010 -2.2831 3.1760 11 1 8.1129 -1.8698 2.3195 12 6 8.3264 -2.8978 4.1891 13 7 9.6355 -2.9759 4.1054 14 14 7.4408 -3.6131 5.6701 15 1 7.0905 -5.0308 5.4002 16 1 8.3268 -3.5400 6.8596 17 1 6.2011 -2.8373 5.9279 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 6 2.7122 0.2568 -4.7558 23 6 3.2198 -0.4523 -5.9848 24 6 2.5710 -0.5151 -7.2222 25 6 3.3470 -1.2374 -8.0632 26 7 4.4438 -1.6254 -7.3795 27 6 5.5472 -2.4325 -7.9064 28 7 4.3410 -1.1203 -6.0769 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -0.1581 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.9280 0.0826 1.0826 35 1 3.7556 -0.9585 3.2721 36 1 3.6094 -2.5197 2.4299 37 1 5.7754 -2.5726 4.0325 38 1 10.1420 -3.4047 4.8129 39 1 2.2491 -1.6319 -1.1524 40 1 3.6539 -1.1197 -3.3923 41 1 1.9842 -1.5494 -3.8349 42 1 1.7138 0.6491 -4.9494 43 1 3.3834 1.0788 -4.5068 44 1 1.6195 -0.0650 -7.4644 45 1 3.1261 -1.4660 -9.0954 46 1 5.3348 -3.4890 -7.7429 47 1 5.6567 -2.2449 -8.9745 48 1 6.4708 -2.1639 -7.3938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715979598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:38 Heat of formation + Delta-G solvation = -27.578626 kcal Electronic energy + Delta-G solvation = -27988.150152 eV Core-core repulsion = 23885.481791 eV Total energy + Delta-G solvation = -4102.668360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.09107 -40.80745 -40.25722 -37.85701 -36.07676 -35.50277 -35.08341 -33.74348 -33.01479 -31.73502 -30.87066 -29.07890 -27.88642 -26.62394 -25.31532 -24.39663 -22.28882 -21.97900 -21.32476 -21.23578 -20.43252 -20.24387 -18.27052 -17.95196 -17.54655 -17.36877 -16.78059 -16.62236 -16.35587 -16.25108 -15.76871 -15.40357 -15.19365 -15.01842 -14.81070 -14.67216 -14.51668 -14.33556 -14.26878 -14.01493 -13.63536 -13.38294 -13.25001 -13.14375 -13.02249 -12.93944 -12.85443 -12.79183 -12.63350 -12.41307 -12.19215 -11.98178 -11.80535 -11.51264 -11.44511 -10.82962 -10.44459 -10.25000 -10.18740 -9.93837 -9.46505 -9.33422 -8.41494 -6.02686 0.98188 1.29973 1.36081 1.44876 1.70761 1.73443 1.82611 1.96748 2.23184 2.36377 2.72946 3.14836 3.40189 3.59495 3.81430 3.87395 3.97049 4.13383 4.17506 4.19410 4.27122 4.33902 4.41788 4.44049 4.48851 4.58469 4.64650 4.68216 4.70090 4.73310 4.78943 4.84595 4.87151 4.99642 5.10188 5.10814 5.21761 5.31886 5.52463 5.64449 5.72478 5.89878 6.04209 6.21210 6.30670 6.59724 6.67650 6.80011 6.88356 7.36386 7.40017 7.97684 8.76398 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009790 B = 0.002204 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.400636 B =12701.673909 C =15176.084744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.060 0.940 4 C 0.055 3.945 5 N -0.684 5.684 6 C 0.064 3.936 7 C 0.446 3.554 8 O -0.616 6.616 9 N -0.591 5.591 10 C -0.329 4.329 11 H 0.052 0.948 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.230 1.230 18 N -0.702 5.702 19 C 0.515 3.485 20 O -0.586 6.586 21 C -0.124 4.124 22 C -0.015 4.015 23 C 0.060 3.940 24 C -0.287 4.287 25 C 0.062 3.938 26 N -0.385 5.385 27 C 0.093 3.907 28 N -0.341 5.341 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.339 0.661 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.412 0.588 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.165 0.835 45 H 0.216 0.784 46 H 0.085 0.915 47 H 0.120 0.880 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.550 -1.322 -17.110 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.078 0.922 4 C -0.073 4.073 5 N -0.316 5.316 6 C -0.069 4.069 7 C 0.234 3.766 8 O -0.501 6.501 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.070 0.930 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.788 3.212 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.153 1.153 18 N -0.353 5.353 19 C 0.302 3.698 20 O -0.467 6.467 21 C -0.164 4.164 22 C -0.054 4.054 23 C -0.105 4.105 24 C -0.316 4.316 25 C -0.085 4.085 26 N -0.167 5.167 27 C -0.047 4.047 28 N -0.165 5.165 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.139 0.861 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.183 0.817 45 H 0.233 0.767 46 H 0.103 0.897 47 H 0.139 0.861 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.995 -1.311 -17.540 28.163 hybrid contribution 0.086 0.256 1.020 1.055 sum -21.909 -1.055 -16.520 27.459 Atomic orbital electron populations 1.22043 0.93084 1.03226 1.02582 1.20986 0.94952 0.96231 0.84099 0.92159 1.22384 0.86497 1.02287 0.96179 1.60052 1.05636 1.26387 1.39551 1.21643 0.89186 1.02597 0.93426 1.21104 0.90957 0.81470 0.83040 1.90564 1.73020 1.51899 1.34568 1.42027 1.06066 1.54022 1.21179 1.18994 0.82070 1.37434 1.07332 0.92998 1.26170 0.96224 0.97315 1.01922 1.69817 1.07580 1.44407 1.35869 0.85324 0.79414 0.79759 0.76736 1.18017 1.20150 1.15277 1.45864 1.66014 1.14698 1.08731 1.20873 0.76530 0.86814 0.85535 1.90655 1.52607 1.17507 1.85962 1.21506 1.03511 0.99647 0.91742 1.19635 1.02071 0.95696 0.88028 1.22489 0.92868 0.97882 0.97277 1.21749 1.05194 1.11637 0.93036 1.23219 0.87247 0.97550 1.00435 1.48896 1.18581 1.41459 1.07796 1.22161 0.86998 0.94592 1.00988 1.77327 1.21489 1.18498 0.99145 0.90076 0.93529 0.90673 0.91855 0.88132 0.84309 0.90473 0.86142 0.77395 0.91164 0.75199 0.89413 0.86939 0.88417 0.91657 0.81737 0.76742 0.89692 0.86133 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.48 71.98 0.68 -1.66 16 2 C 0.14 2.89 2.81 45.00 0.13 3.02 16 3 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 4 C 0.06 1.00 5.24 86.30 0.45 1.45 16 5 N -0.68 -18.90 5.85 -517.92 -3.03 -21.92 16 6 C 0.06 1.82 6.17 85.56 0.53 2.34 16 7 C 0.45 19.99 7.82 87.66 0.69 20.68 16 8 O -0.62 -34.64 15.78 -3.07 -0.05 -34.69 16 9 N -0.59 -27.74 5.09 -306.98 -1.56 -29.30 16 10 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 11 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 12 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 13 N -0.94 -56.99 13.96 21.66 0.30 -56.69 16 14 Si 0.97 38.63 27.74 68.60 1.90 40.53 16 15 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 16 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.23 -7.60 6.52 99.48 0.65 -6.96 16 18 N -0.70 -15.52 4.80 -442.52 -2.12 -17.64 16 19 C 0.51 13.52 7.79 87.66 0.68 14.20 16 20 O -0.59 -19.30 15.64 -3.04 -0.05 -19.35 16 21 C -0.12 -2.81 5.66 29.85 0.17 -2.64 16 22 C -0.01 -0.35 5.08 29.85 0.15 -0.20 16 23 C 0.06 1.45 6.49 43.10 0.28 1.73 16 24 C -0.29 -5.25 10.72 21.99 0.24 -5.02 16 25 C 0.06 0.90 11.49 83.54 0.96 1.86 16 26 N -0.39 -7.46 4.01 -369.57 -1.48 -8.94 16 27 C 0.09 1.02 11.47 127.77 1.47 2.49 16 28 N -0.34 -9.29 12.54 -47.39 -0.59 -9.89 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.34 11.01 8.43 -89.70 -0.76 10.25 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 38 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.41 8.03 8.60 -92.71 -0.80 7.23 16 40 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 43 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 44 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -90.03 408.11 -0.10 -90.13 By element: Atomic # 1 Polarization: 49.79 SS G_CDS: -1.15 Total: 48.64 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 7.74 Total: 19.12 kcal Atomic # 7 Polarization: -135.89 SS G_CDS: -8.49 Total: -144.38 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.90 Total: 40.53 kcal Total: -90.03 -0.10 -90.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715979598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.551 kcal (2) G-P(sol) polarization free energy of solvation -90.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds