Wall clock time and date at job start Tue Mar 31 2020 20:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47314 * 60.00210 * 14 12 10 16 16 H 1.48495 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47022 * 299.99884 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21275 * 120.00678 * 0.02562 * 19 18 2 21 21 C 1.50701 * 119.99690 * 179.97438 * 19 18 2 22 22 H 1.08996 * 109.47353 * 300.00507 * 21 19 18 23 23 C 1.53006 * 109.46955 * 60.00305 * 21 19 18 24 24 C 1.50704 * 109.47153 * 179.97438 * 21 19 18 25 25 C 1.39863 * 126.04186 * 299.69563 * 24 21 19 26 26 N 1.30837 * 108.20259 * 179.81886 * 25 24 21 27 27 N 1.40083 * 108.20583 * 0.43745 * 26 25 24 28 28 C 1.46502 * 126.03981 * 179.74756 * 27 26 25 29 29 C 1.34951 * 107.92181 * 359.71814 * 27 26 25 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 36 36 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 37 37 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 38 38 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 40 40 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 41 41 H 1.08996 * 109.47443 * 59.99845 * 23 21 19 42 42 H 1.09004 * 109.47114 * 179.97438 * 23 21 19 43 43 H 1.09000 * 109.46977 * 299.99426 * 23 21 19 44 44 H 1.08003 * 125.89892 * 359.97438 * 25 24 21 45 45 H 1.09003 * 109.46359 * 269.97310 * 28 27 26 46 46 H 1.08993 * 109.47165 * 29.96670 * 28 27 26 47 47 H 1.09000 * 109.47286 * 149.97294 * 28 27 26 48 48 H 1.08006 * 126.12166 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7599 -1.6337 4.0011 16 1 10.7198 -3.6985 5.2725 17 1 10.5635 -3.7611 2.8537 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8592 1.1585 -2.4115 21 6 2.6501 -0.7285 -3.5873 22 1 3.6494 -1.1204 -3.3977 23 6 1.7065 -1.8828 -3.9314 24 6 2.7001 0.2396 -4.7412 25 6 1.6132 0.9376 -5.2775 26 7 2.0501 1.6806 -6.2618 27 7 3.4292 1.4711 -6.3896 28 6 4.3098 2.1047 -7.3742 29 6 3.8036 0.5828 -5.4451 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1583 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.7996 -1.2884 0.3435 36 1 3.7556 -0.9587 3.2721 37 1 3.6093 -2.5199 2.4296 38 1 5.7754 -2.5722 4.0326 39 1 8.2103 -3.8257 5.9405 40 1 2.2491 -1.6318 -1.1525 41 1 0.7072 -1.4911 -4.1210 42 1 2.0701 -2.3963 -4.8215 43 1 1.6700 -2.5832 -3.0970 44 1 0.5903 0.8759 -4.9363 45 1 4.3505 1.4903 -8.2736 46 1 3.9224 3.0919 -7.6258 47 1 5.3114 2.2032 -6.9557 48 1 4.8046 0.2120 -5.2809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716010869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:11 Heat of formation + Delta-G solvation = 3.319418 kcal Electronic energy + Delta-G solvation = -28676.957441 eV Core-core repulsion = 24575.628920 eV Total energy + Delta-G solvation = -4101.328521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42856 -39.79374 -38.31745 -36.73241 -34.57460 -34.24820 -33.62882 -32.79772 -31.24953 -30.85667 -29.45602 -27.59380 -26.69644 -25.09332 -24.55907 -23.26103 -21.85741 -21.22020 -20.56652 -19.85085 -19.23796 -17.92399 -17.38336 -16.80607 -16.27178 -15.94840 -15.52021 -15.41900 -15.15772 -14.59345 -14.54152 -14.46405 -14.19436 -13.94561 -13.72304 -13.55526 -13.11631 -13.05897 -13.01247 -12.82072 -12.66567 -12.56222 -12.25095 -11.93399 -11.89769 -11.75337 -11.62788 -11.61095 -11.45875 -11.05629 -10.94442 -10.62524 -10.45842 -10.23076 -9.70606 -9.51746 -9.46573 -9.07062 -8.50512 -8.47850 -8.08984 -7.97755 -6.43381 -3.84261 1.77261 2.39087 2.64090 2.75539 3.18614 3.24509 3.27646 3.28981 3.88850 4.05350 4.27767 4.31106 4.60233 4.68936 4.81346 4.87333 4.89773 4.97907 5.02371 5.11156 5.14313 5.19906 5.22060 5.25197 5.29217 5.45393 5.48763 5.53319 5.59480 5.65538 5.72746 5.76562 5.84485 5.94494 6.00246 6.04436 6.12039 6.24873 6.51748 6.53727 6.85810 7.15470 7.51468 7.53334 7.59681 7.60970 8.04305 8.30905 8.59513 9.16082 9.52451 10.03950 10.74247 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.002247 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.592020 B =12456.651373 C =14221.891713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.096 0.904 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.724 5.724 19 C 0.523 3.477 20 O -0.530 6.530 21 C -0.032 4.032 22 H 0.104 0.896 23 C -0.137 4.137 24 C -0.216 4.216 25 C 0.080 3.920 26 N -0.304 5.304 27 N -0.380 5.380 28 C 0.103 3.897 29 C 0.063 3.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.347 0.653 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.396 0.604 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.177 0.823 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 1.954 -17.552 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.114 0.886 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.376 5.376 19 C 0.309 3.691 20 O -0.406 6.406 21 C -0.055 4.055 22 H 0.122 0.878 23 C -0.195 4.195 24 C -0.228 4.228 25 C -0.106 4.106 26 N -0.125 5.125 27 N -0.162 5.162 28 C -0.038 4.038 29 C -0.084 4.084 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.167 0.833 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.194 0.806 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.816 4.596 -18.829 23.802 hybrid contribution 0.858 -2.285 1.169 2.706 sum -12.958 2.310 -17.660 22.026 Atomic orbital electron populations 1.22139 0.95175 1.01950 1.02652 1.20998 0.93300 0.98476 0.83224 0.88568 1.22304 0.88772 0.98937 0.97933 1.60014 1.07560 1.57483 1.04913 1.21692 0.95116 0.96935 0.94532 1.19803 0.88088 0.84268 0.85320 1.90526 1.71130 1.51490 1.33556 1.41855 1.07396 1.50841 1.19896 1.19648 0.81528 1.35176 1.06593 0.87994 1.25263 1.00692 0.96782 0.95196 1.69603 1.36803 1.38544 1.09356 0.85918 0.82133 0.78618 0.77551 1.19874 1.20972 1.19925 1.46021 1.67996 1.13810 1.09813 1.20512 0.77199 0.87244 0.84181 1.90696 1.49234 1.15793 1.84854 1.19534 1.01593 0.94330 0.90037 0.87844 1.21751 0.99168 0.96397 1.02177 1.19401 0.92982 1.07564 1.02817 1.23553 0.99808 0.94142 0.93107 1.77338 0.89175 1.24009 1.22010 1.48366 1.06629 1.34277 1.26883 1.21824 0.92405 0.98999 0.90576 1.22300 0.99948 0.94295 0.91828 0.91567 0.91920 0.92612 0.89598 0.95038 0.83267 0.89503 0.93873 0.77458 0.91812 0.77005 0.92116 0.91430 0.92005 0.80650 0.90916 0.89413 0.89486 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.62 2.88 -67.93 -0.20 1.42 16 3 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 4 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 5 N -0.67 -10.33 6.12 -115.06 -0.70 -11.03 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 8 O -0.58 -15.64 15.78 5.55 0.09 -15.56 16 9 N -0.56 -14.08 5.29 -10.97 -0.06 -14.14 16 10 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 14 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 N -0.72 -7.57 4.25 -53.80 -0.23 -7.80 16 19 C 0.52 6.39 7.07 -10.99 -0.08 6.31 16 20 O -0.53 -8.57 15.05 5.56 0.08 -8.48 16 21 C -0.03 -0.31 3.09 -92.92 -0.29 -0.60 16 22 H 0.10 0.90 8.11 -51.93 -0.42 0.47 16 23 C -0.14 -0.98 8.97 37.16 0.33 -0.64 16 24 C -0.22 -2.43 4.36 -105.06 -0.46 -2.89 16 25 C 0.08 0.99 10.78 -17.37 -0.19 0.80 16 26 N -0.30 -4.02 12.58 30.62 0.39 -3.64 16 27 N -0.38 -4.11 4.01 -68.16 -0.27 -4.38 16 28 C 0.10 0.66 11.47 59.85 0.69 1.35 16 29 C 0.06 0.65 11.38 -17.22 -0.20 0.45 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.35 5.45 7.28 -39.29 -0.29 5.16 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.40 3.34 7.57 -40.82 -0.31 3.03 16 41 H 0.06 0.44 8.02 -51.93 -0.42 0.03 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.36 7.56 -51.93 -0.39 -0.04 16 44 H 0.18 1.92 8.06 -52.48 -0.42 1.50 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.17 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -36.21 406.10 -6.84 -43.06 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.55 Total: 14.93 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -0.41 Total: 8.64 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.15 Total: -64.54 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.21 -6.84 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716010869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.375 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds