Wall clock time and date at job start Tue Mar 31 2020 20:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47314 * 60.00210 * 14 12 10 16 16 H 1.48495 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47022 * 299.99884 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21275 * 120.00678 * 0.02562 * 19 18 2 21 21 C 1.50701 * 119.99690 * 179.97438 * 19 18 2 22 22 H 1.08996 * 109.47353 * 300.00507 * 21 19 18 23 23 C 1.53006 * 109.46955 * 60.00305 * 21 19 18 24 24 C 1.50704 * 109.47153 * 179.97438 * 21 19 18 25 25 C 1.39863 * 126.04186 * 299.69563 * 24 21 19 26 26 N 1.30837 * 108.20259 * 179.81886 * 25 24 21 27 27 N 1.40083 * 108.20583 * 0.43745 * 26 25 24 28 28 C 1.46502 * 126.03981 * 179.74756 * 27 26 25 29 29 C 1.34951 * 107.92181 * 359.71814 * 27 26 25 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 36 36 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 37 37 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 38 38 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 40 40 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 41 41 H 1.08996 * 109.47443 * 59.99845 * 23 21 19 42 42 H 1.09004 * 109.47114 * 179.97438 * 23 21 19 43 43 H 1.09000 * 109.46977 * 299.99426 * 23 21 19 44 44 H 1.08003 * 125.89892 * 359.97438 * 25 24 21 45 45 H 1.09003 * 109.46359 * 269.97310 * 28 27 26 46 46 H 1.08993 * 109.47165 * 29.96670 * 28 27 26 47 47 H 1.09000 * 109.47286 * 149.97294 * 28 27 26 48 48 H 1.08006 * 126.12166 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7599 -1.6337 4.0011 16 1 10.7198 -3.6985 5.2725 17 1 10.5635 -3.7611 2.8537 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8592 1.1585 -2.4115 21 6 2.6501 -0.7285 -3.5873 22 1 3.6494 -1.1204 -3.3977 23 6 1.7065 -1.8828 -3.9314 24 6 2.7001 0.2396 -4.7412 25 6 1.6132 0.9376 -5.2775 26 7 2.0501 1.6806 -6.2618 27 7 3.4292 1.4711 -6.3896 28 6 4.3098 2.1047 -7.3742 29 6 3.8036 0.5828 -5.4451 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1583 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.7996 -1.2884 0.3435 36 1 3.7556 -0.9587 3.2721 37 1 3.6093 -2.5199 2.4296 38 1 5.7754 -2.5722 4.0326 39 1 8.2103 -3.8257 5.9405 40 1 2.2491 -1.6318 -1.1525 41 1 0.7072 -1.4911 -4.1210 42 1 2.0701 -2.3963 -4.8215 43 1 1.6700 -2.5832 -3.0970 44 1 0.5903 0.8759 -4.9363 45 1 4.3505 1.4903 -8.2736 46 1 3.9224 3.0919 -7.6258 47 1 5.3114 2.2032 -6.9557 48 1 4.8046 0.2120 -5.2809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716010869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:10 Heat of formation + Delta-G solvation = -24.996904 kcal Electronic energy + Delta-G solvation = -28678.185328 eV Core-core repulsion = 24575.628920 eV Total energy + Delta-G solvation = -4102.556409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24443 -40.74889 -40.08429 -37.84167 -36.00271 -35.37341 -35.00191 -33.56959 -33.22872 -31.77635 -30.19693 -28.94169 -27.34202 -26.68512 -25.40356 -24.56273 -22.74667 -22.01329 -21.47628 -21.08379 -20.63621 -19.88291 -18.34986 -17.68536 -17.67596 -16.90881 -16.86635 -16.34557 -16.24997 -16.15410 -15.89521 -15.41436 -15.31417 -15.11246 -14.95682 -14.65749 -14.28731 -14.01292 -13.86780 -13.61289 -13.52691 -13.41998 -13.30802 -13.10270 -13.01770 -12.99873 -12.76712 -12.62031 -12.47413 -12.43072 -12.40819 -12.11742 -11.88688 -11.48462 -11.45115 -10.66203 -10.33806 -10.30915 -9.99724 -9.97778 -9.30558 -9.28161 -8.45042 -5.93499 0.96704 1.40813 1.42977 1.53514 1.70143 1.77437 1.83432 2.07795 2.30102 2.43228 2.93186 3.22599 3.54080 3.61644 3.81505 3.94883 4.02552 4.22806 4.24725 4.29700 4.31934 4.40225 4.42427 4.44451 4.51810 4.53462 4.62921 4.68096 4.72169 4.79402 4.84551 4.85521 4.87863 5.04337 5.14046 5.22200 5.32146 5.38043 5.42380 5.64010 5.69776 5.89854 6.11681 6.16057 6.43293 6.62257 6.67238 6.75064 7.14537 7.41506 7.58745 8.14169 8.71987 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.002247 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.592020 B =12456.651373 C =14221.891713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.057 3.943 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.270 1.270 18 N -0.714 5.714 19 C 0.519 3.481 20 O -0.577 6.577 21 C -0.026 4.026 22 H 0.116 0.884 23 C -0.131 4.131 24 C -0.233 4.233 25 C 0.066 3.934 26 N -0.341 5.341 27 N -0.383 5.383 28 C 0.094 3.906 29 C 0.060 3.940 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.345 0.655 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.408 0.592 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.177 0.823 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 0.394 -17.201 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.072 4.072 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.195 1.195 18 N -0.367 5.367 19 C 0.306 3.694 20 O -0.456 6.456 21 C -0.049 4.049 22 H 0.134 0.866 23 C -0.188 4.188 24 C -0.245 4.245 25 C -0.119 4.119 26 N -0.163 5.163 27 N -0.165 5.165 28 C -0.046 4.046 29 C -0.087 4.087 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.194 0.806 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.128 0.872 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.847 3.003 -18.460 23.271 hybrid contribution 0.847 -1.746 1.026 2.196 sum -12.999 1.257 -17.434 21.783 Atomic orbital electron populations 1.22045 0.93318 1.03147 1.02428 1.20911 0.94610 0.96701 0.83553 0.92137 1.22345 0.86185 1.00564 0.98107 1.59980 1.10274 1.57611 1.04204 1.21547 0.90178 0.99171 0.95823 1.20935 0.90742 0.82112 0.83817 1.90495 1.72859 1.52693 1.34973 1.41925 1.06816 1.51623 1.20671 1.19611 0.83136 1.36838 1.06714 0.90386 1.26016 1.04791 0.95901 0.94553 1.69661 1.38297 1.38470 1.09621 0.85016 0.76970 0.78520 0.78010 1.19959 1.19556 1.19517 1.45958 1.67214 1.14309 1.09204 1.21017 0.76413 0.86787 0.85162 1.90676 1.51407 1.17874 1.85613 1.19567 1.02641 0.94436 0.88235 0.86634 1.21731 0.98226 0.95640 1.03245 1.19680 0.92981 1.08242 1.03570 1.23696 1.00408 0.94494 0.93303 1.77246 0.90943 1.25138 1.22982 1.48731 1.06155 1.34189 1.27424 1.22159 0.92677 0.99067 0.90692 1.22832 1.00962 0.93687 0.91234 0.90404 0.93590 0.90596 0.88715 0.92123 0.83605 0.87861 0.90839 0.76925 0.91323 0.75539 0.92620 0.90547 0.90258 0.80602 0.89145 0.89527 0.87223 0.78031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.15 3.12 2.88 44.99 0.13 3.25 16 3 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 4 C 0.06 1.14 5.30 86.30 0.46 1.59 16 5 N -0.69 -20.06 6.12 -517.93 -3.17 -23.23 16 6 C 0.07 2.06 6.17 85.56 0.53 2.59 16 7 C 0.44 20.09 7.82 87.66 0.69 20.77 16 8 O -0.62 -33.83 15.78 -3.07 -0.05 -33.88 16 9 N -0.57 -28.65 5.29 -307.00 -1.62 -30.28 16 10 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 13 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 14 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 N -0.71 -14.13 4.25 -442.54 -1.88 -16.01 16 19 C 0.52 12.63 7.07 87.66 0.62 13.25 16 20 O -0.58 -19.32 15.05 -3.01 -0.05 -19.36 16 21 C -0.03 -0.49 3.09 -12.28 -0.04 -0.52 16 22 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 23 C -0.13 -1.67 8.97 71.98 0.65 -1.02 16 24 C -0.23 -5.23 4.36 -20.15 -0.09 -5.32 16 25 C 0.07 1.70 10.78 85.23 0.92 2.62 16 26 N -0.34 -9.29 12.58 -57.03 -0.72 -10.01 16 27 N -0.38 -8.16 4.01 -369.56 -1.48 -9.64 16 28 C 0.09 1.11 11.47 127.77 1.47 2.57 16 29 C 0.06 1.19 11.38 83.54 0.95 2.14 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.34 10.30 7.28 -89.69 -0.65 9.64 16 36 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 39 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.41 6.02 7.57 -92.71 -0.70 5.32 16 41 H 0.05 0.77 8.02 -2.39 -0.02 0.75 16 42 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.08 0.72 7.56 -2.39 -0.02 0.70 16 44 H 0.18 4.16 8.06 -2.91 -0.02 4.13 16 45 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -80.64 406.10 0.49 -80.15 By element: Atomic # 1 Polarization: 45.49 SS G_CDS: -1.09 Total: 44.39 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 8.24 Total: 22.08 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -8.59 Total: -137.69 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -0.09 Total: -53.24 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -80.64 0.49 -80.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716010869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.151 kcal (2) G-P(sol) polarization free energy of solvation -80.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds