Wall clock time and date at job start Tue Mar 31 2020 20:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46583 * 2 1 4 4 C 1.50698 * 109.46851 * 120.00361 * 2 1 3 5 5 O 1.21280 * 119.99735 * 120.00355 * 4 2 1 6 6 N 1.34783 * 120.00020 * 299.99535 * 4 2 1 7 7 C 1.46500 * 119.99492 * 180.02562 * 6 4 2 8 8 H 1.08995 * 109.47158 * 324.99952 * 7 6 4 9 9 C 1.52993 * 109.47187 * 85.00558 * 7 6 4 10 10 C 1.53006 * 109.46616 * 205.00467 * 7 6 4 11 11 N 1.46898 * 109.47138 * 55.00041 * 10 7 6 12 12 C 1.46906 * 110.99888 * 180.02562 * 11 10 7 13 13 C 1.50699 * 109.47140 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99678 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99614 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99518 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00058 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00085 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00409 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46949 * 60.00154 * 20 18 16 22 22 H 1.48496 * 109.47431 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47561 * 300.00356 * 20 18 16 24 24 C 1.50694 * 109.47129 * 240.00390 * 2 1 3 25 25 C 1.39866 * 126.04021 * 299.69470 * 24 2 1 26 26 N 1.30846 * 108.20425 * 179.81898 * 25 24 2 27 27 N 1.40083 * 108.20091 * 0.43161 * 26 25 24 28 28 C 1.46501 * 126.03503 * 179.74145 * 27 26 25 29 29 C 1.34948 * 107.92539 * 359.72306 * 27 26 25 30 30 H 1.08998 * 109.47260 * 299.99960 * 1 2 3 31 31 H 1.09002 * 109.47235 * 59.99573 * 1 2 3 32 32 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 33 33 H 0.96993 * 119.99811 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.47314 * 299.99331 * 9 7 6 35 35 H 1.09004 * 109.47456 * 59.99384 * 9 7 6 36 36 H 1.09002 * 109.47076 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.46770 * 294.99988 * 10 7 6 38 38 H 1.08995 * 109.47019 * 175.00201 * 10 7 6 39 39 H 1.00904 * 110.99913 * 303.95145 * 11 10 7 40 40 H 1.09004 * 109.47040 * 299.99934 * 12 11 10 41 41 H 1.09000 * 109.47033 * 59.99886 * 12 11 10 42 42 H 0.96996 * 120.00269 * 359.97438 * 15 13 12 43 43 H 0.97002 * 120.00022 * 179.97438 * 19 18 16 44 44 H 1.08000 * 125.89994 * 359.97438 * 25 24 2 45 45 H 1.09000 * 109.47124 * 269.97712 * 28 27 26 46 46 H 1.08992 * 109.47088 * 29.97484 * 28 27 26 47 47 H 1.09001 * 109.47335 * 149.97865 * 28 27 26 48 48 H 1.08012 * 126.12465 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9405 3.6507 8 1 2.2325 -2.0132 3.4613 9 6 3.5979 -0.4345 3.9943 10 6 1.2514 -0.6616 4.8220 11 7 -0.1183 -1.0376 4.4472 12 6 -1.0546 -0.7825 5.5500 13 6 -2.4463 -1.1789 5.1292 14 8 -2.6390 -1.6300 4.0199 15 7 -3.4767 -1.0322 5.9855 16 6 -4.7427 -1.3933 5.6028 17 1 -4.9143 -1.7950 4.6151 18 6 -5.8050 -1.2426 6.4858 19 7 -5.5960 -0.7543 7.6878 20 14 -7.5300 -1.7339 5.9642 21 1 -7.5508 -3.1787 5.6214 22 1 -8.4764 -1.4767 7.0792 23 1 -7.9341 -0.9378 4.7776 24 6 2.0323 -0.7103 -1.2305 25 6 1.7784 -2.0424 -1.5730 26 7 2.3776 -2.2938 -2.7087 27 7 3.0409 -1.1306 -3.1203 28 6 3.8399 -0.9796 -4.3389 29 6 2.8134 -0.1737 -2.1964 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1488 0.5384 2.5436 34 1 4.2704 -0.6332 3.1598 35 1 3.5609 0.6383 4.1836 36 1 3.9614 -0.9480 4.8845 37 1 1.2823 0.3996 5.0687 38 1 1.5644 -1.2452 5.6877 39 1 -0.4084 -0.5574 3.6085 40 1 -0.7578 -1.3667 6.4212 41 1 -1.0397 0.2780 5.8014 42 1 -3.3225 -0.6718 6.8727 43 1 -6.3376 -0.6487 8.3041 44 1 1.1876 -2.7419 -1.0003 45 1 4.8774 -1.2386 -4.1275 46 1 3.4508 -1.6411 -5.1128 47 1 3.7862 0.0533 -4.6830 48 1 3.1875 0.8392 -2.2232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716010870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:13 Heat of formation + Delta-G solvation = 3.839084 kcal Electronic energy + Delta-G solvation = -28770.913753 eV Core-core repulsion = 24669.607766 eV Total energy + Delta-G solvation = -4101.305986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42461 -39.79299 -38.30050 -36.72636 -34.55002 -34.23537 -33.61581 -32.79696 -31.23156 -30.85691 -29.41934 -27.58722 -26.67201 -25.09049 -24.50350 -23.24895 -21.82713 -21.22749 -20.56546 -19.83808 -19.22670 -17.91196 -17.39084 -16.77554 -16.28345 -15.97636 -15.58013 -15.34218 -15.10440 -14.64827 -14.48138 -14.45600 -14.00923 -13.95022 -13.87653 -13.46123 -13.11567 -13.06100 -13.05269 -12.79055 -12.61535 -12.46423 -12.26063 -11.94876 -11.76642 -11.72402 -11.60297 -11.58637 -11.43999 -11.04076 -10.93352 -10.60029 -10.44092 -10.21214 -9.69641 -9.49823 -9.46274 -9.07184 -8.50617 -8.46069 -8.07761 -7.95920 -6.41642 -3.82422 1.75886 2.38525 2.67623 2.72964 3.20455 3.26195 3.28968 3.30824 3.90577 4.06368 4.27797 4.30390 4.59388 4.67196 4.81726 4.84379 4.87210 5.02358 5.05845 5.08479 5.12032 5.20444 5.24008 5.28996 5.31598 5.44963 5.58608 5.61287 5.64403 5.65854 5.77305 5.80255 5.94248 5.96181 6.00490 6.11797 6.19398 6.26196 6.51520 6.56958 6.84851 7.16262 7.51175 7.55170 7.61453 7.62140 8.06114 8.30494 8.61266 9.17920 9.54223 10.05710 10.75948 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.002199 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.691012 B =12731.481040 C =14294.698814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 H 0.097 0.903 4 C 0.522 3.478 5 O -0.531 6.531 6 N -0.724 5.724 7 C 0.145 3.855 8 H 0.097 0.903 9 C -0.160 4.160 10 C 0.051 3.949 11 N -0.666 5.666 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.581 6.581 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.214 4.214 25 C 0.084 3.916 26 N -0.302 5.302 27 N -0.382 5.382 28 C 0.104 3.896 29 C 0.056 3.944 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.348 0.652 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.180 0.820 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.699 8.148 -14.056 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.052 4.052 3 H 0.115 0.885 4 C 0.308 3.692 5 O -0.406 6.406 6 N -0.376 5.376 7 C 0.040 3.960 8 H 0.115 0.885 9 C -0.219 4.219 10 C -0.080 4.080 11 N -0.299 5.299 12 C -0.083 4.083 13 C 0.225 3.775 14 O -0.466 6.466 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.226 4.226 25 C -0.102 4.102 26 N -0.123 5.123 27 N -0.164 5.164 28 C -0.037 4.037 29 C -0.090 4.090 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.104 0.896 39 H 0.168 0.832 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.197 0.803 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 20.351 5.621 -15.616 26.260 hybrid contribution -1.222 2.053 1.182 2.666 sum 19.129 7.675 -14.434 25.162 Atomic orbital electron populations 1.21776 0.91787 1.03667 1.02580 1.19525 0.97372 0.98886 0.89389 0.88497 1.20544 0.79825 0.84536 0.84300 1.90697 1.37455 1.25859 1.86594 1.46024 1.53931 1.32042 1.05650 1.20997 0.92324 0.98921 0.83752 0.88497 1.22140 0.96588 1.01126 1.02081 1.22302 0.89449 0.98678 0.97522 1.60017 1.00024 1.63686 1.06178 1.21696 0.92643 0.99129 0.94824 1.19800 0.85627 0.85311 0.86749 1.90529 1.84622 1.49748 1.21654 1.41855 1.06703 1.56375 1.15080 1.19653 0.82771 1.39331 1.01130 0.87970 1.25261 1.00277 0.97267 0.95151 1.69606 1.33230 1.45305 1.06201 0.85916 0.81135 0.79266 0.77897 1.19873 1.21007 1.19923 1.19443 1.08518 0.95500 0.99104 1.23680 0.97920 0.95678 0.92936 1.77392 1.13791 1.05600 1.15539 1.48377 1.40450 1.08469 1.19070 1.21795 0.94594 1.03301 0.84041 1.22190 1.00012 0.95647 0.91121 0.91742 0.91526 0.91404 0.77007 0.91999 0.92658 0.91543 0.95084 0.89593 0.83234 0.89510 0.93919 0.77481 0.91841 0.80273 0.90963 0.89414 0.89694 0.81218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.98 37.16 0.33 -1.01 16 2 C -0.03 -0.28 3.09 -92.93 -0.29 -0.57 16 3 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 4 C 0.52 6.36 7.07 -10.98 -0.08 6.28 16 5 O -0.53 -8.53 15.02 5.56 0.08 -8.45 16 6 N -0.72 -7.55 4.25 -53.81 -0.23 -7.78 16 7 C 0.14 1.61 2.88 -67.93 -0.20 1.42 16 8 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 9 C -0.16 -1.49 9.48 37.15 0.35 -1.14 16 10 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 11 N -0.67 -10.25 6.12 -115.05 -0.70 -10.95 16 12 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 13 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 14 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 15 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 17 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 20 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.21 -2.41 4.37 -105.06 -0.46 -2.87 16 25 C 0.08 1.13 10.76 -17.36 -0.19 0.94 16 26 N -0.30 -4.14 12.58 30.63 0.39 -3.76 16 27 N -0.38 -3.97 4.01 -68.16 -0.27 -4.25 16 28 C 0.10 0.59 11.47 59.85 0.69 1.28 16 29 C 0.06 0.53 11.38 -17.22 -0.20 0.33 16 30 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 33 H 0.40 3.34 7.57 -40.82 -0.31 3.03 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.35 5.40 7.28 -39.29 -0.29 5.12 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -36.15 406.08 -6.84 -42.99 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -7.55 Total: 15.15 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.41 Total: 8.20 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.15 Total: -64.50 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.15 -6.84 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716010870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.833 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds