Wall clock time and date at job start Tue Mar 31 2020 20:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46583 * 2 1 4 4 C 1.50698 * 109.46851 * 120.00361 * 2 1 3 5 5 O 1.21280 * 119.99735 * 120.00355 * 4 2 1 6 6 N 1.34783 * 120.00020 * 299.99535 * 4 2 1 7 7 C 1.46500 * 119.99492 * 180.02562 * 6 4 2 8 8 H 1.08995 * 109.47158 * 324.99952 * 7 6 4 9 9 C 1.52993 * 109.47187 * 85.00558 * 7 6 4 10 10 C 1.53006 * 109.46616 * 205.00467 * 7 6 4 11 11 N 1.46898 * 109.47138 * 55.00041 * 10 7 6 12 12 C 1.46906 * 110.99888 * 180.02562 * 11 10 7 13 13 C 1.50699 * 109.47140 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99678 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99614 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99518 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00058 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00085 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00409 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46949 * 60.00154 * 20 18 16 22 22 H 1.48496 * 109.47431 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47561 * 300.00356 * 20 18 16 24 24 C 1.50694 * 109.47129 * 240.00390 * 2 1 3 25 25 C 1.39866 * 126.04021 * 299.69470 * 24 2 1 26 26 N 1.30846 * 108.20425 * 179.81898 * 25 24 2 27 27 N 1.40083 * 108.20091 * 0.43161 * 26 25 24 28 28 C 1.46501 * 126.03503 * 179.74145 * 27 26 25 29 29 C 1.34948 * 107.92539 * 359.72306 * 27 26 25 30 30 H 1.08998 * 109.47260 * 299.99960 * 1 2 3 31 31 H 1.09002 * 109.47235 * 59.99573 * 1 2 3 32 32 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 33 33 H 0.96993 * 119.99811 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.47314 * 299.99331 * 9 7 6 35 35 H 1.09004 * 109.47456 * 59.99384 * 9 7 6 36 36 H 1.09002 * 109.47076 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.46770 * 294.99988 * 10 7 6 38 38 H 1.08995 * 109.47019 * 175.00201 * 10 7 6 39 39 H 1.00904 * 110.99913 * 303.95145 * 11 10 7 40 40 H 1.09004 * 109.47040 * 299.99934 * 12 11 10 41 41 H 1.09000 * 109.47033 * 59.99886 * 12 11 10 42 42 H 0.96996 * 120.00269 * 359.97438 * 15 13 12 43 43 H 0.97002 * 120.00022 * 179.97438 * 19 18 16 44 44 H 1.08000 * 125.89994 * 359.97438 * 25 24 2 45 45 H 1.09000 * 109.47124 * 269.97712 * 28 27 26 46 46 H 1.08992 * 109.47088 * 29.97484 * 28 27 26 47 47 H 1.09001 * 109.47335 * 149.97865 * 28 27 26 48 48 H 1.08012 * 126.12465 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9405 3.6507 8 1 2.2325 -2.0132 3.4613 9 6 3.5979 -0.4345 3.9943 10 6 1.2514 -0.6616 4.8220 11 7 -0.1183 -1.0376 4.4472 12 6 -1.0546 -0.7825 5.5500 13 6 -2.4463 -1.1789 5.1292 14 8 -2.6390 -1.6300 4.0199 15 7 -3.4767 -1.0322 5.9855 16 6 -4.7427 -1.3933 5.6028 17 1 -4.9143 -1.7950 4.6151 18 6 -5.8050 -1.2426 6.4858 19 7 -5.5960 -0.7543 7.6878 20 14 -7.5300 -1.7339 5.9642 21 1 -7.5508 -3.1787 5.6214 22 1 -8.4764 -1.4767 7.0792 23 1 -7.9341 -0.9378 4.7776 24 6 2.0323 -0.7103 -1.2305 25 6 1.7784 -2.0424 -1.5730 26 7 2.3776 -2.2938 -2.7087 27 7 3.0409 -1.1306 -3.1203 28 6 3.8399 -0.9796 -4.3389 29 6 2.8134 -0.1737 -2.1964 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1488 0.5384 2.5436 34 1 4.2704 -0.6332 3.1598 35 1 3.5609 0.6383 4.1836 36 1 3.9614 -0.9480 4.8845 37 1 1.2823 0.3996 5.0687 38 1 1.5644 -1.2452 5.6877 39 1 -0.4084 -0.5574 3.6085 40 1 -0.7578 -1.3667 6.4212 41 1 -1.0397 0.2780 5.8014 42 1 -3.3225 -0.6718 6.8727 43 1 -6.3376 -0.6487 8.3041 44 1 1.1876 -2.7419 -1.0003 45 1 4.8774 -1.2386 -4.1275 46 1 3.4508 -1.6411 -5.1128 47 1 3.7862 0.0533 -4.6830 48 1 3.1875 0.8392 -2.2232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716010870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:12 Heat of formation + Delta-G solvation = -24.845151 kcal Electronic energy + Delta-G solvation = -28772.157594 eV Core-core repulsion = 24669.607766 eV Total energy + Delta-G solvation = -4102.549828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23892 -40.74811 -40.07737 -37.83871 -35.99905 -35.37390 -35.00129 -33.57460 -33.22368 -31.77729 -30.18284 -28.93796 -27.32696 -26.68952 -25.43269 -24.55768 -22.72617 -22.00743 -21.46795 -21.07711 -20.62931 -19.88102 -18.36581 -17.67784 -17.63195 -16.98857 -16.83039 -16.34035 -16.29297 -16.07430 -15.87460 -15.38190 -15.32305 -15.17616 -14.89358 -14.68665 -14.28603 -14.00901 -13.86136 -13.63444 -13.51087 -13.40389 -13.27606 -13.10979 -13.04859 -12.99700 -12.76657 -12.62391 -12.50859 -12.42607 -12.39952 -12.11669 -11.88002 -11.48216 -11.43913 -10.65646 -10.32969 -10.30330 -9.99122 -9.97640 -9.30072 -9.27345 -8.44789 -5.93036 0.98791 1.40734 1.42883 1.53342 1.73453 1.77566 1.80165 2.08399 2.30310 2.44476 2.93393 3.22819 3.54053 3.62359 3.84037 3.93838 4.03509 4.24423 4.24982 4.27179 4.32729 4.38696 4.43558 4.45824 4.52014 4.53694 4.63165 4.70656 4.71632 4.79380 4.84077 4.85035 4.88071 5.02765 5.12645 5.21311 5.31403 5.39328 5.42696 5.63847 5.67065 5.90283 6.12166 6.21138 6.43886 6.62751 6.67302 6.75678 7.15057 7.41680 7.59272 8.14968 8.72178 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.002199 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.691012 B =12731.481040 C =14294.698814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.018 4.018 3 H 0.136 0.864 4 C 0.517 3.483 5 O -0.577 6.577 6 N -0.715 5.715 7 C 0.147 3.853 8 H 0.060 0.940 9 C -0.150 4.150 10 C 0.057 3.943 11 N -0.687 5.687 12 C 0.065 3.935 13 C 0.436 3.564 14 O -0.623 6.623 15 N -0.573 5.573 16 C -0.333 4.333 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.991 3.009 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.235 4.235 25 C 0.060 3.940 26 N -0.345 5.345 27 N -0.382 5.382 28 C 0.094 3.906 29 C 0.071 3.929 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.408 0.592 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.345 0.655 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.161 0.839 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.121 0.879 48 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.732 11.038 -13.824 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.040 4.040 3 H 0.154 0.846 4 C 0.305 3.695 5 O -0.456 6.456 6 N -0.367 5.367 7 C 0.042 3.958 8 H 0.078 0.922 9 C -0.209 4.209 10 C -0.072 4.072 11 N -0.321 5.321 12 C -0.067 4.067 13 C 0.224 3.776 14 O -0.509 6.509 15 N -0.210 5.210 16 C -0.463 4.463 17 H 0.095 0.905 18 C -0.213 4.213 19 N -0.560 5.560 20 Si 0.815 3.185 21 H -0.200 1.200 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.247 4.247 25 C -0.126 4.126 26 N -0.167 5.167 27 N -0.164 5.164 28 C -0.046 4.046 29 C -0.076 4.076 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.245 0.755 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.164 0.836 40 H 0.122 0.878 41 H 0.092 0.908 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.178 0.822 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.140 0.860 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 21.392 8.539 -15.353 27.682 hybrid contribution -1.457 1.142 1.051 2.129 sum 19.935 9.681 -14.302 26.376 Atomic orbital electron populations 1.21740 0.92033 1.01987 1.03624 1.19528 0.96905 1.00208 0.87400 0.84621 1.21074 0.79078 0.83993 0.85387 1.90679 1.39753 1.27913 1.87254 1.45962 1.53523 1.32105 1.05124 1.20913 0.93746 0.97151 0.84023 0.92154 1.22037 0.94538 1.02465 1.01825 1.22346 0.86772 1.00528 0.97563 1.59979 1.01570 1.64767 1.05755 1.21549 0.88675 1.01006 0.95477 1.20946 0.87596 0.83365 0.85723 1.90503 1.85790 1.51151 1.23476 1.41918 1.06530 1.56979 1.15608 1.19604 0.84708 1.41192 1.00753 0.90460 1.26003 1.03432 0.96758 0.95059 1.69661 1.34412 1.45269 1.06658 0.85021 0.76917 0.78647 0.77955 1.20041 1.19498 1.19584 1.19686 1.09768 0.94794 1.00480 1.23619 0.98630 0.96938 0.93368 1.77283 1.15325 1.07962 1.16124 1.48777 1.39786 1.07645 1.20186 1.22186 0.94337 1.05651 0.82417 1.22881 0.98137 0.96990 0.89617 0.90919 0.90156 0.94468 0.75531 0.93711 0.90540 0.90396 0.92105 0.88710 0.83593 0.87850 0.90844 0.76929 0.91339 0.82198 0.89997 0.89575 0.86023 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.98 71.98 0.65 -1.93 16 2 C -0.02 -0.33 3.09 -12.29 -0.04 -0.37 16 3 H 0.14 1.40 8.11 -2.39 -0.02 1.38 16 4 C 0.52 12.63 7.07 87.66 0.62 13.25 16 5 O -0.58 -19.46 15.02 -3.03 -0.05 -19.51 16 6 N -0.71 -14.21 4.25 -442.54 -1.88 -16.09 16 7 C 0.15 3.13 2.88 44.99 0.13 3.26 16 8 H 0.06 1.75 7.58 -2.39 -0.02 1.74 16 9 C -0.15 -2.50 9.48 71.98 0.68 -1.81 16 10 C 0.06 1.14 5.30 86.31 0.46 1.60 16 11 N -0.69 -20.28 6.12 -517.92 -3.17 -23.45 16 12 C 0.07 2.09 6.17 85.56 0.53 2.61 16 13 C 0.44 20.27 7.82 87.66 0.69 20.96 16 14 O -0.62 -34.16 15.78 -3.06 -0.05 -34.21 16 15 N -0.57 -28.89 5.29 -306.99 -1.62 -30.51 16 16 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 17 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 18 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 19 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 20 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 C -0.24 -5.23 4.37 -20.15 -0.09 -5.32 16 25 C 0.06 1.72 10.76 85.23 0.92 2.64 16 26 N -0.34 -9.89 12.58 -57.02 -0.72 -10.60 16 27 N -0.38 -7.55 4.01 -369.56 -1.48 -9.03 16 28 C 0.09 0.88 11.47 127.77 1.47 2.35 16 29 C 0.07 1.17 11.38 83.54 0.95 2.13 16 30 H 0.07 1.22 7.56 -2.39 -0.02 1.20 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 0.92 8.03 -2.39 -0.02 0.90 16 33 H 0.41 6.05 7.57 -92.71 -0.70 5.34 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.34 10.43 7.28 -89.69 -0.65 9.78 16 40 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 43 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.16 4.92 8.06 -2.91 -0.02 4.89 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.22 1.34 8.06 -2.90 -0.02 1.32 16 Total: -1.00 -83.00 406.08 0.49 -82.51 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: -1.09 Total: 43.64 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 8.24 Total: 21.18 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -8.59 Total: -138.50 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.09 Total: -53.72 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -83.00 0.49 -82.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716010870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.666 kcal (2) G-P(sol) polarization free energy of solvation -83.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds