Wall clock time and date at job start Tue Mar 31 2020 19:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.52997 * 109.47248 * 240.00012 * 2 1 3 5 5 C 1.53003 * 109.47310 * 175.00057 * 4 2 1 6 6 N 1.46491 * 109.47518 * 179.97438 * 5 4 2 7 7 C 1.36934 * 120.00544 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99717 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00557 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99839 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00127 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47259 * 60.00290 * 11 9 7 13 13 H 1.48502 * 109.47145 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47378 * 300.00101 * 11 9 7 15 15 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 16 16 C 1.34777 * 120.00271 * 274.99861 * 15 2 1 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 2 19 19 N 1.46505 * 109.47064 * 180.02562 * 18 16 15 20 20 N 1.40308 * 126.32353 * 269.68884 * 19 18 16 21 21 C 1.28871 * 108.11961 * 180.02562 * 20 19 18 22 22 N 1.38020 * 108.81240 * 1.12563 * 21 20 19 23 23 C 1.34300 * 108.33254 * 358.31559 * 22 21 20 24 24 O 1.21807 * 126.32242 * 181.53070 * 23 22 21 25 25 C 1.46721 * 124.15844 * 177.45272 * 22 21 20 26 26 C 1.53282 * 108.65321 * 19.60459 * 25 22 21 27 27 C 1.53223 * 109.37343 * 308.14553 * 26 25 22 28 28 C 1.51113 * 127.47334 * 181.73894 * 21 20 19 29 29 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 30 30 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 32 32 H 1.09004 * 109.47067 * 294.99832 * 4 2 1 33 33 H 1.09001 * 109.47475 * 54.99783 * 4 2 1 34 34 H 1.09004 * 109.46872 * 299.99894 * 5 4 2 35 35 H 1.09001 * 109.47075 * 59.99482 * 5 4 2 36 36 H 0.97007 * 119.99842 * 359.97438 * 6 5 4 37 37 H 0.96997 * 120.00146 * 180.02562 * 10 9 7 38 38 H 0.97005 * 120.00266 * 95.00444 * 15 2 1 39 39 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 40 40 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 41 41 H 1.08997 * 109.60670 * 139.36158 * 25 22 21 42 42 H 1.09011 * 109.60239 * 259.69092 * 25 22 21 43 43 H 1.09001 * 109.48669 * 68.11730 * 26 25 22 44 44 H 1.09007 * 109.48526 * 188.17837 * 26 25 22 45 45 H 1.09003 * 109.54719 * 190.53587 * 27 26 25 46 46 H 1.09004 * 109.54308 * 310.80241 * 27 26 25 47 47 H 1.08998 * 109.74673 * 78.00769 * 28 21 20 48 48 H 1.09005 * 109.79053 * 317.30329 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 7 4.0533 -1.3044 -2.5094 7 6 5.3953 -1.3404 -2.7793 8 1 6.0938 -0.8596 -2.1104 9 6 5.8582 -1.9957 -3.9121 10 7 5.0071 -2.5820 -4.7271 11 14 7.6889 -2.0454 -4.2798 12 1 8.4004 -2.7157 -3.1619 13 1 7.9208 -2.7997 -5.5378 14 1 8.2010 -0.6598 -4.4325 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8582 1.1584 2.4117 18 6 2.6499 -0.7284 3.5875 19 7 2.6985 0.2128 4.7091 20 7 3.7897 1.0161 5.0733 21 6 3.4517 1.7063 6.1078 22 7 2.1626 1.3680 6.4668 23 6 1.7024 0.4641 5.5866 24 8 0.5921 -0.0367 5.5805 25 6 1.4622 1.9148 7.6343 26 6 2.1573 3.2132 8.0593 27 6 3.6590 2.9562 8.2218 28 6 4.2821 2.7372 6.8366 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7517 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4370 -1.3573 35 1 3.9995 -1.0727 -0.4259 36 1 3.4260 -1.7365 -3.1101 37 1 5.3305 -3.0402 -5.5185 38 1 2.2491 -1.6317 1.1527 39 1 3.6492 -1.1202 3.3980 40 1 1.9777 -1.5508 3.8325 41 1 0.4247 2.1236 7.3737 42 1 1.4962 1.1943 8.4517 43 1 1.9993 3.9764 7.2973 44 1 1.7420 3.5543 9.0077 45 1 4.1267 3.8168 8.7001 46 1 3.8127 2.0683 8.8353 47 1 4.2788 3.6738 6.2790 48 1 5.3051 2.3771 6.9455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716184774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:50 Heat of formation + Delta-G solvation = 10.275978 kcal Electronic energy + Delta-G solvation = -29112.136438 eV Core-core repulsion = 25011.109577 eV Total energy + Delta-G solvation = -4101.026862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.77974 -39.80574 -37.95738 -37.08719 -36.45975 -34.34074 -33.80901 -32.86362 -31.91016 -30.71486 -29.24624 -28.01614 -27.82500 -24.88299 -23.96345 -23.04250 -22.35145 -21.56660 -20.81106 -20.42974 -20.13921 -17.75521 -17.60408 -17.03211 -16.73741 -16.33676 -16.11281 -15.69513 -15.18386 -14.87727 -14.77823 -14.65700 -14.63184 -13.97854 -13.84304 -13.68789 -13.54498 -13.30557 -13.21686 -12.82309 -12.73894 -12.34489 -12.19761 -12.10938 -11.82146 -11.67845 -11.55098 -11.50842 -11.19259 -11.01311 -10.77186 -10.65420 -10.57368 -10.51809 -10.36848 -10.06201 -9.74742 -9.68397 -9.01654 -8.84701 -8.67108 -6.91813 -5.75841 -3.04629 1.45259 1.73810 2.50318 2.59504 2.70933 3.26698 3.44946 3.49079 3.50334 3.84649 4.05053 4.13572 4.23033 4.52697 4.57351 4.65794 4.73910 4.82294 4.93713 4.94775 5.00061 5.12090 5.15539 5.21184 5.27505 5.29125 5.37749 5.41300 5.56352 5.57717 5.66410 5.74450 5.78455 5.88670 5.95760 6.05914 6.24769 6.29791 6.31258 6.35543 6.54870 6.82550 6.87913 7.44780 7.50845 7.70524 7.87991 8.21693 8.43215 9.54096 10.11932 10.46646 11.46992 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.002183 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.622707 B =12823.854093 C =14068.255862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.088 0.912 4 C -0.134 4.134 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.715 5.715 16 C 0.499 3.501 17 O -0.530 6.530 18 C 0.142 3.858 19 N -0.437 5.437 20 N -0.265 5.265 21 C 0.275 3.725 22 N -0.556 5.556 23 C 0.657 3.343 24 O -0.556 6.556 25 C 0.131 3.869 26 C -0.138 4.138 27 C -0.124 4.124 28 C -0.040 4.040 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.403 0.597 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.650 9.601 29.385 31.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 N -0.368 5.368 16 C 0.283 3.717 17 O -0.406 6.406 18 C 0.016 3.984 19 N -0.256 5.256 20 N -0.086 5.086 21 C -0.003 4.003 22 N -0.286 5.286 23 C 0.357 3.643 24 O -0.429 6.429 25 C 0.010 3.990 26 C -0.175 4.175 27 C -0.162 4.162 28 C -0.080 4.080 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.238 0.762 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.122 0.878 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.786 9.845 28.680 31.073 hybrid contribution 0.297 -0.615 -0.222 0.719 sum -6.489 9.230 28.458 30.613 Atomic orbital electron populations 1.22159 0.95408 1.02086 1.02270 1.20981 0.93564 0.97656 0.83544 0.89440 1.22067 0.98066 1.00831 0.96304 1.20630 0.90339 0.95615 0.90747 1.42362 1.05377 1.64905 1.25173 1.19187 0.83842 1.28484 1.05546 0.91291 1.24749 0.97744 1.00917 0.97680 1.69648 1.32869 1.40610 1.15176 0.86252 0.85091 0.77493 0.77262 1.21260 1.21681 1.21264 1.46030 1.67082 1.14269 1.09396 1.20812 0.78219 0.87872 0.84845 1.90712 1.49372 1.15783 1.84746 1.21250 1.05584 0.89412 0.82150 1.48249 1.10505 1.39431 1.27442 1.76795 1.10757 1.07584 1.13461 1.24274 0.84928 0.97648 0.93493 1.46026 1.14784 1.40340 1.27424 1.16428 0.84926 0.81902 0.81035 1.91070 1.17984 1.57766 1.76124 1.21779 0.96816 0.95512 0.84924 1.21988 0.95783 0.96446 1.03325 1.21720 0.95094 1.03530 0.95872 1.20503 0.97936 0.95063 0.94472 0.91512 0.92415 0.92510 0.91261 0.90213 0.96462 0.96348 0.78316 0.93477 0.76218 0.85435 0.85816 0.89072 0.90039 0.90317 0.88878 0.89366 0.90698 0.87848 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 2 C 0.15 2.09 2.57 -67.93 -0.17 1.91 16 3 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.13 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.15 3.11 6.15 -4.05 -0.02 3.09 16 6 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 11 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 N -0.72 -9.24 4.53 -53.81 -0.24 -9.48 16 16 C 0.50 7.27 7.86 -10.98 -0.09 7.19 16 17 O -0.53 -9.94 16.09 5.56 0.09 -9.85 16 18 C 0.14 1.67 6.87 -5.19 -0.04 1.63 16 19 N -0.44 -6.12 3.12 -66.40 -0.21 -6.33 16 20 N -0.26 -3.45 12.51 33.13 0.41 -3.03 16 21 C 0.28 2.76 7.73 -153.75 -1.19 1.57 16 22 N -0.56 -6.07 3.13 -117.56 -0.37 -6.44 16 23 C 0.66 9.72 8.64 -87.06 -0.75 8.97 16 24 O -0.56 -9.73 17.82 5.09 0.09 -9.64 16 25 C 0.13 0.88 6.88 -3.78 -0.03 0.86 16 26 C -0.14 -0.48 5.94 -26.47 -0.16 -0.64 16 27 C -0.12 -0.34 5.96 -26.38 -0.16 -0.50 16 28 C -0.04 -0.20 6.32 -27.44 -0.17 -0.37 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 36 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 39 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.12 1.19 8.12 -51.93 -0.42 0.77 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 43 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 44 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 46 H 0.07 0.21 8.11 -51.93 -0.42 -0.22 16 47 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -39.62 399.42 -9.41 -49.03 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.77 Total: 6.63 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -2.80 Total: 12.29 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.02 Total: -72.06 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.18 Total: -19.49 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.62 -9.41 -49.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716184774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.301 kcal (2) G-P(sol) polarization free energy of solvation -39.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds