Wall clock time and date at job start Tue Mar 31 2020 19:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.52997 * 109.47248 * 240.00012 * 2 1 3 5 5 C 1.53003 * 109.47310 * 175.00057 * 4 2 1 6 6 N 1.46491 * 109.47518 * 179.97438 * 5 4 2 7 7 C 1.36934 * 120.00544 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99717 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00557 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99839 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00127 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47259 * 60.00290 * 11 9 7 13 13 H 1.48502 * 109.47145 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47378 * 300.00101 * 11 9 7 15 15 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 16 16 C 1.34777 * 120.00271 * 274.99861 * 15 2 1 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 2 19 19 N 1.46505 * 109.47064 * 180.02562 * 18 16 15 20 20 N 1.40308 * 126.32353 * 269.68884 * 19 18 16 21 21 C 1.28871 * 108.11961 * 180.02562 * 20 19 18 22 22 N 1.38020 * 108.81240 * 1.12563 * 21 20 19 23 23 C 1.34300 * 108.33254 * 358.31559 * 22 21 20 24 24 O 1.21807 * 126.32242 * 181.53070 * 23 22 21 25 25 C 1.46721 * 124.15844 * 177.45272 * 22 21 20 26 26 C 1.53282 * 108.65321 * 19.60459 * 25 22 21 27 27 C 1.53223 * 109.37343 * 308.14553 * 26 25 22 28 28 C 1.51113 * 127.47334 * 181.73894 * 21 20 19 29 29 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 30 30 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 32 32 H 1.09004 * 109.47067 * 294.99832 * 4 2 1 33 33 H 1.09001 * 109.47475 * 54.99783 * 4 2 1 34 34 H 1.09004 * 109.46872 * 299.99894 * 5 4 2 35 35 H 1.09001 * 109.47075 * 59.99482 * 5 4 2 36 36 H 0.97007 * 119.99842 * 359.97438 * 6 5 4 37 37 H 0.96997 * 120.00146 * 180.02562 * 10 9 7 38 38 H 0.97005 * 120.00266 * 95.00444 * 15 2 1 39 39 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 40 40 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 41 41 H 1.08997 * 109.60670 * 139.36158 * 25 22 21 42 42 H 1.09011 * 109.60239 * 259.69092 * 25 22 21 43 43 H 1.09001 * 109.48669 * 68.11730 * 26 25 22 44 44 H 1.09007 * 109.48526 * 188.17837 * 26 25 22 45 45 H 1.09003 * 109.54719 * 190.53587 * 27 26 25 46 46 H 1.09004 * 109.54308 * 310.80241 * 27 26 25 47 47 H 1.08998 * 109.74673 * 78.00769 * 28 21 20 48 48 H 1.09005 * 109.79053 * 317.30329 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 7 4.0533 -1.3044 -2.5094 7 6 5.3953 -1.3404 -2.7793 8 1 6.0938 -0.8596 -2.1104 9 6 5.8582 -1.9957 -3.9121 10 7 5.0071 -2.5820 -4.7271 11 14 7.6889 -2.0454 -4.2798 12 1 8.4004 -2.7157 -3.1619 13 1 7.9208 -2.7997 -5.5378 14 1 8.2010 -0.6598 -4.4325 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8582 1.1584 2.4117 18 6 2.6499 -0.7284 3.5875 19 7 2.6985 0.2128 4.7091 20 7 3.7897 1.0161 5.0733 21 6 3.4517 1.7063 6.1078 22 7 2.1626 1.3680 6.4668 23 6 1.7024 0.4641 5.5866 24 8 0.5921 -0.0367 5.5805 25 6 1.4622 1.9148 7.6343 26 6 2.1573 3.2132 8.0593 27 6 3.6590 2.9562 8.2218 28 6 4.2821 2.7372 6.8366 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7517 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4370 -1.3573 35 1 3.9995 -1.0727 -0.4259 36 1 3.4260 -1.7365 -3.1101 37 1 5.3305 -3.0402 -5.5185 38 1 2.2491 -1.6317 1.1527 39 1 3.6492 -1.1202 3.3980 40 1 1.9777 -1.5508 3.8325 41 1 0.4247 2.1236 7.3737 42 1 1.4962 1.1943 8.4517 43 1 1.9993 3.9764 7.2973 44 1 1.7420 3.5543 9.0077 45 1 4.1267 3.8168 8.7001 46 1 3.8127 2.0683 8.8353 47 1 4.2788 3.6738 6.2790 48 1 5.3051 2.3771 6.9455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716184774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:49 Heat of formation + Delta-G solvation = -17.933034 kcal Electronic energy + Delta-G solvation = -29113.359673 eV Core-core repulsion = 25011.109577 eV Total energy + Delta-G solvation = -4102.250096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.66690 -40.97636 -38.84901 -38.09676 -37.64765 -36.12697 -34.54380 -33.79095 -33.46084 -32.20178 -29.93265 -29.46901 -28.83339 -25.94285 -25.39337 -23.66151 -23.54907 -22.97689 -22.04887 -21.59832 -20.69127 -19.28236 -18.68152 -18.45792 -17.69490 -17.34786 -17.01943 -16.77454 -16.63777 -16.13509 -15.67783 -15.51590 -15.26780 -15.21499 -15.18680 -15.07562 -14.76643 -14.39844 -14.24776 -13.99121 -13.84350 -13.30693 -13.13607 -13.12024 -12.93777 -12.90734 -12.86702 -12.39831 -12.31605 -12.08437 -12.01752 -11.97119 -11.89096 -11.85881 -11.67107 -11.48301 -11.35117 -10.94707 -10.77827 -10.18419 -9.67073 -9.01676 -7.96253 -5.25484 0.58109 0.92804 1.46031 1.46553 1.47068 1.50114 1.56367 1.92318 2.22068 2.55253 3.20070 3.37034 3.53018 3.56989 3.70012 3.74838 3.84036 3.91203 4.02773 4.08961 4.12824 4.33056 4.36559 4.37719 4.43930 4.52287 4.53810 4.61537 4.74857 4.77370 4.79756 4.87137 4.88542 4.93839 5.00299 5.06040 5.17036 5.17978 5.22391 5.30153 5.34501 5.47579 5.49241 5.58811 6.25976 6.43240 6.53794 6.85423 7.11727 7.32543 8.07499 8.31785 9.26735 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.002183 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.622707 B =12823.854093 C =14068.255862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.065 0.935 4 C -0.117 4.117 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.249 4.249 8 H 0.072 0.928 9 C -0.075 4.075 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.276 1.276 13 H -0.293 1.293 14 H -0.280 1.280 15 N -0.705 5.705 16 C 0.497 3.503 17 O -0.577 6.577 18 C 0.139 3.861 19 N -0.446 5.446 20 N -0.303 5.303 21 C 0.285 3.715 22 N -0.554 5.554 23 C 0.639 3.361 24 O -0.597 6.597 25 C 0.118 3.882 26 C -0.130 4.130 27 C -0.117 4.117 28 C -0.042 4.042 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.004 0.996 35 H 0.027 0.973 36 H 0.376 0.624 37 H 0.252 0.748 38 H 0.417 0.583 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 10.175 31.398 33.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.083 0.917 4 C -0.155 4.155 5 C 0.028 3.972 6 N -0.388 5.388 7 C -0.381 4.381 8 H 0.089 0.911 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.803 3.197 12 H -0.202 1.202 13 H -0.219 1.219 14 H -0.206 1.206 15 N -0.358 5.358 16 C 0.282 3.718 17 O -0.457 6.457 18 C 0.014 3.986 19 N -0.264 5.264 20 N -0.125 5.125 21 C 0.007 3.993 22 N -0.282 5.282 23 C 0.338 3.662 24 O -0.474 6.474 25 C -0.002 4.002 26 C -0.168 4.168 27 C -0.155 4.155 28 C -0.081 4.081 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.022 0.978 35 H 0.045 0.955 36 H 0.208 0.792 37 H 0.061 0.939 38 H 0.254 0.746 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.098 0.902 47 H 0.132 0.868 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.635 10.431 30.743 32.950 hybrid contribution -0.069 -0.723 -0.780 1.066 sum -5.704 9.709 29.963 32.009 Atomic orbital electron populations 1.22073 0.93874 1.03057 1.02057 1.20802 0.94611 0.96334 0.83330 0.91692 1.21885 0.94723 1.01872 0.97021 1.20752 0.93336 0.94113 0.89010 1.42549 1.04516 1.65226 1.26538 1.19561 0.85264 1.27775 1.05485 0.91054 1.25579 1.02127 1.01187 0.97803 1.69798 1.34682 1.41702 1.15577 0.85209 0.80000 0.77557 0.76979 1.20167 1.21936 1.20633 1.45954 1.66367 1.14825 1.08700 1.21321 0.77314 0.87377 0.85746 1.90684 1.51551 1.17900 1.85525 1.21470 1.07300 0.89242 0.80585 1.48470 1.10673 1.39707 1.27533 1.76792 1.10964 1.09272 1.15481 1.25333 0.84679 0.96890 0.92363 1.46324 1.15241 1.39123 1.27503 1.16793 0.84772 0.82665 0.81994 1.91011 1.19504 1.59479 1.77400 1.22201 0.96508 0.97598 0.83881 1.22027 0.96307 0.94098 1.04357 1.21756 0.94243 1.05030 0.94437 1.20885 0.98095 0.93811 0.95319 0.90392 0.90811 0.94054 0.89893 0.90131 0.97773 0.95514 0.79221 0.93903 0.74609 0.82929 0.83873 0.90248 0.88571 0.91002 0.85957 0.86397 0.90246 0.86791 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.48 71.98 0.68 -3.08 16 2 C 0.15 4.32 2.57 44.99 0.12 4.44 16 3 H 0.06 2.15 7.58 -2.38 -0.02 2.13 16 4 C -0.12 -3.55 4.87 30.59 0.15 -3.40 16 5 C 0.15 6.17 6.15 86.38 0.53 6.70 16 6 N -0.75 -38.02 5.60 -343.46 -1.92 -39.94 16 7 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 10 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 11 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 N -0.71 -17.87 4.53 -442.54 -2.00 -19.87 16 16 C 0.50 14.66 7.86 87.66 0.69 15.34 16 17 O -0.58 -22.38 16.09 -3.02 -0.05 -22.43 16 18 C 0.14 3.26 6.87 85.63 0.59 3.85 16 19 N -0.45 -12.69 3.12 -481.98 -1.50 -14.20 16 20 N -0.30 -7.89 12.51 -49.11 -0.61 -8.51 16 21 C 0.29 5.51 7.73 137.75 1.06 6.58 16 22 N -0.55 -12.06 3.13 -644.27 -2.02 -14.07 16 23 C 0.64 19.47 8.64 179.10 1.55 21.02 16 24 O -0.60 -21.81 17.82 -4.69 -0.08 -21.89 16 25 C 0.12 1.49 6.88 86.43 0.59 2.09 16 26 C -0.13 -0.58 5.94 30.76 0.18 -0.40 16 27 C -0.12 -0.25 5.96 30.82 0.18 -0.07 16 28 C -0.04 -0.32 6.32 30.13 0.19 -0.13 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 35 H 0.03 1.04 7.75 -2.39 -0.02 1.02 16 36 H 0.38 20.07 7.67 -92.70 -0.71 19.36 16 37 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.42 8.26 8.60 -92.70 -0.80 7.46 16 39 H 0.15 2.70 8.14 -2.39 -0.02 2.69 16 40 H 0.14 2.72 8.12 -2.39 -0.02 2.70 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.07 0.46 8.10 -2.39 -0.02 0.44 16 44 H 0.12 -0.10 8.14 -2.38 -0.02 -0.12 16 45 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.08 0.16 8.11 -2.38 -0.02 0.14 16 47 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -88.10 399.42 1.41 -86.69 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.53 Total: 28.87 kcal Atomic # 6 Polarization: 28.02 SS G_CDS: 7.83 Total: 35.84 kcal Atomic # 7 Polarization: -147.62 SS G_CDS: -7.78 Total: -155.40 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.13 Total: -44.32 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -88.10 1.41 -86.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716184774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.754 kcal (2) G-P(sol) polarization free energy of solvation -88.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds