Wall clock time and date at job start Tue Mar 31 2020 19:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00180 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47586 * 89.99558 * 11 9 7 13 13 H 1.48505 * 109.47293 * 210.00502 * 11 9 7 14 14 H 1.48505 * 109.46772 * 329.99807 * 11 9 7 15 15 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 16 16 C 1.34773 * 120.00306 * 84.99801 * 15 2 1 17 17 O 1.21292 * 119.99815 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00409 * 179.97438 * 16 15 2 19 19 N 1.46506 * 109.47326 * 179.97438 * 18 16 15 20 20 N 1.40315 * 126.32494 * 269.68679 * 19 18 16 21 21 C 1.28878 * 108.11367 * 180.02562 * 20 19 18 22 22 N 1.38006 * 108.81702 * 1.12934 * 21 20 19 23 23 C 1.34305 * 108.33522 * 358.31499 * 22 21 20 24 24 O 1.21813 * 126.32397 * 181.52836 * 23 22 21 25 25 C 1.46724 * 124.16089 * 177.44854 * 22 21 20 26 26 C 1.53291 * 108.64891 * 19.61259 * 25 22 21 27 27 C 1.53229 * 109.36752 * 308.13885 * 26 25 22 28 28 C 1.51107 * 127.46268 * 181.74065 * 21 20 19 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 0.97010 * 119.99864 * 180.02562 * 10 9 7 38 38 H 0.97003 * 120.00235 * 265.00555 * 15 2 1 39 39 H 1.08997 * 109.47334 * 300.00478 * 18 16 15 40 40 H 1.09008 * 109.47061 * 60.00564 * 18 16 15 41 41 H 1.08998 * 109.60519 * 139.35618 * 25 22 21 42 42 H 1.08998 * 109.60908 * 259.69256 * 25 22 21 43 43 H 1.08994 * 109.49042 * 68.11131 * 26 25 22 44 44 H 1.09001 * 109.48312 * 188.17344 * 26 25 22 45 45 H 1.08999 * 109.54445 * 190.53744 * 27 26 25 46 46 H 1.09005 * 109.54652 * 310.81143 * 27 26 25 47 47 H 1.09005 * 109.75217 * 78.01631 * 28 21 20 48 48 H 1.09000 * 109.79827 * 317.30375 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3952 -1.3405 2.7793 8 1 6.0937 -0.8603 2.1100 9 6 5.8579 -1.9949 3.9126 10 7 7.1479 -2.0298 4.1718 11 14 4.6499 -2.8261 5.0699 12 1 4.4448 -4.2338 4.6438 13 1 5.1916 -2.8012 6.4524 14 1 3.3528 -2.1040 5.0335 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1589 -2.4114 18 6 2.6498 -0.7281 -3.5876 19 7 2.6983 0.2132 -4.7092 20 7 1.6664 0.4689 -5.6249 21 6 2.0846 1.3542 -6.4629 22 7 3.3872 1.6844 -6.1486 23 6 3.7466 0.9918 -5.0555 24 8 4.8196 1.0541 -4.4822 25 6 4.2084 2.6237 -6.9208 26 6 3.2816 3.5040 -7.7669 27 6 2.3262 2.6131 -8.5679 28 6 1.3154 1.9725 -7.6071 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.4258 -1.7353 3.1108 37 1 7.4713 -2.4876 4.9637 38 1 2.2489 -1.6317 -1.1529 39 1 3.6491 -1.1200 -3.3981 40 1 1.9775 -1.5504 -3.8328 41 1 4.7862 3.2492 -6.2404 42 1 4.8846 2.0690 -7.5713 43 1 2.7059 4.1593 -7.1134 44 1 3.8781 4.1061 -8.4524 45 1 1.7967 3.2166 -9.3051 46 1 2.8938 1.8320 -9.0738 47 1 0.6363 2.7349 -7.2251 48 1 0.7479 1.2023 -8.1294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716184775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:53 Heat of formation + Delta-G solvation = 15.142230 kcal Electronic energy + Delta-G solvation = -29199.902829 eV Core-core repulsion = 25099.086984 eV Total energy + Delta-G solvation = -4100.815845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76219 -39.84971 -37.93911 -37.07408 -36.55708 -34.49066 -33.80746 -32.86423 -31.94869 -30.94788 -29.25621 -28.30493 -27.96707 -24.89299 -23.90258 -23.03525 -22.28891 -21.40503 -20.93427 -20.48975 -20.13447 -17.85576 -17.60338 -17.38090 -16.77513 -16.36357 -16.04855 -15.79676 -15.11372 -14.96033 -14.77739 -14.67551 -14.51638 -14.10077 -13.95663 -13.82484 -13.60562 -13.31763 -13.20107 -12.89733 -12.60177 -12.42773 -12.18101 -12.13612 -12.03737 -11.67423 -11.55969 -11.51412 -11.50632 -11.21463 -10.89872 -10.73606 -10.54410 -10.50251 -10.33518 -10.13191 -9.76312 -9.56990 -9.07918 -8.86615 -8.65467 -7.21566 -5.74218 -3.10241 1.45942 1.71950 2.53093 2.57466 2.71570 3.22284 3.38005 3.40112 3.45867 3.85395 4.04216 4.13951 4.23382 4.52048 4.59005 4.60566 4.75369 4.80840 4.83504 4.93286 4.96604 5.10573 5.15877 5.17533 5.22221 5.26351 5.27993 5.40154 5.52019 5.57815 5.63310 5.63701 5.68266 5.79954 5.89736 5.94151 5.96479 6.15733 6.22867 6.30929 6.47940 6.73651 6.77820 7.44909 7.45818 7.92531 8.02584 8.17644 8.44574 9.23579 9.95522 10.15308 11.44208 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.002193 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.861794 B =12764.508035 C =13742.152765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.089 0.911 4 C -0.138 4.138 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.090 0.910 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.716 5.716 16 C 0.499 3.501 17 O -0.529 6.529 18 C 0.142 3.858 19 N -0.439 5.439 20 N -0.270 5.270 21 C 0.277 3.723 22 N -0.556 5.556 23 C 0.656 3.344 24 O -0.547 6.547 25 C 0.130 3.870 26 C -0.137 4.137 27 C -0.124 4.124 28 C -0.039 4.039 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.403 0.597 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.462 7.216 -29.647 34.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.107 0.893 4 C -0.177 4.177 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.194 4.194 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.369 5.369 16 C 0.283 3.717 17 O -0.405 6.405 18 C 0.017 3.983 19 N -0.258 5.258 20 N -0.092 5.092 21 C -0.002 4.002 22 N -0.286 5.286 23 C 0.356 3.644 24 O -0.419 6.419 25 C 0.009 3.991 26 C -0.175 4.175 27 C -0.162 4.162 28 C -0.079 4.079 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.238 0.762 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.121 0.879 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.370 7.523 -28.923 34.075 hybrid contribution 0.032 -0.713 1.015 1.241 sum -16.339 6.810 -27.907 33.047 Atomic orbital electron populations 1.22154 0.95322 1.02002 1.02346 1.20953 0.93575 0.97785 0.83452 0.89290 1.22113 0.98112 1.00812 0.96634 1.20622 0.90107 0.96071 0.90203 1.42715 1.05294 1.66300 1.25960 1.19078 0.82181 1.29268 1.06831 0.89255 1.24698 0.95640 1.00789 0.98229 1.69715 1.11716 1.48205 1.28594 0.86510 0.80906 0.79738 0.81131 1.21106 1.21739 1.20379 1.46016 1.67259 1.14272 1.09376 1.20840 0.78136 0.87876 0.84855 1.90719 1.49310 1.15678 1.84761 1.21233 1.05600 0.89857 0.81627 1.48232 1.10881 1.40040 1.26682 1.76708 1.12727 1.17739 1.02026 1.24232 0.84314 0.94140 0.97546 1.46030 1.13393 1.41839 1.27310 1.16467 0.85106 0.81282 0.81569 1.91126 1.22597 1.69817 1.58400 1.21795 0.92739 0.90364 0.94228 1.21987 0.98389 0.98028 0.99119 1.21724 0.97196 0.99700 0.97617 1.20490 0.96600 1.00534 0.90270 0.92375 0.92463 0.91562 0.91301 0.90262 0.95589 0.95434 0.80730 0.93080 0.76223 0.85503 0.85763 0.88935 0.89970 0.90339 0.88842 0.89405 0.90678 0.87940 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 2 C 0.15 1.97 2.57 -67.93 -0.17 1.79 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.14 -2.02 4.87 -26.74 -0.13 -2.15 16 5 C 0.16 3.10 6.15 -4.04 -0.02 3.08 16 6 N -0.76 -18.39 5.41 -59.91 -0.32 -18.71 16 7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 9 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 10 N -0.93 -30.04 13.97 55.49 0.78 -29.26 16 11 Si 0.89 22.39 27.74 -169.99 -4.71 17.67 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 15 N -0.72 -8.80 4.53 -53.81 -0.24 -9.05 16 16 C 0.50 7.08 7.86 -10.99 -0.09 6.99 16 17 O -0.53 -9.71 16.09 5.55 0.09 -9.63 16 18 C 0.14 1.64 6.87 -5.19 -0.04 1.60 16 19 N -0.44 -6.08 3.12 -66.40 -0.21 -6.29 16 20 N -0.27 -3.30 12.51 33.12 0.41 -2.88 16 21 C 0.28 2.66 7.73 -153.76 -1.19 1.47 16 22 N -0.56 -6.21 3.13 -117.55 -0.37 -6.58 16 23 C 0.66 10.11 8.64 -87.05 -0.75 9.36 16 24 O -0.55 -10.39 17.83 5.09 0.09 -10.30 16 25 C 0.13 0.94 6.88 -3.77 -0.03 0.91 16 26 C -0.14 -0.50 5.94 -26.46 -0.16 -0.66 16 27 C -0.12 -0.32 5.96 -26.37 -0.16 -0.48 16 28 C -0.04 -0.17 6.32 -27.44 -0.17 -0.35 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.55 7.75 -51.93 -0.40 0.14 16 36 H 0.36 8.39 5.53 -40.82 -0.23 8.17 16 37 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 38 H 0.40 3.96 8.60 -40.82 -0.35 3.61 16 39 H 0.13 1.34 8.12 -51.93 -0.42 0.92 16 40 H 0.12 0.98 8.14 -51.92 -0.42 0.55 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 46 H 0.07 0.20 8.11 -51.93 -0.42 -0.22 16 47 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -41.41 396.30 -9.05 -50.45 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.72 Total: 5.82 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -2.81 Total: 12.78 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: 0.05 Total: -72.77 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -41.41 -9.05 -50.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716184775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.597 kcal (2) G-P(sol) polarization free energy of solvation -41.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds