Wall clock time and date at job start Tue Mar 31 2020 19:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00180 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47586 * 89.99558 * 11 9 7 13 13 H 1.48505 * 109.47293 * 210.00502 * 11 9 7 14 14 H 1.48505 * 109.46772 * 329.99807 * 11 9 7 15 15 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 16 16 C 1.34773 * 120.00306 * 84.99801 * 15 2 1 17 17 O 1.21292 * 119.99815 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00409 * 179.97438 * 16 15 2 19 19 N 1.46506 * 109.47326 * 179.97438 * 18 16 15 20 20 N 1.40315 * 126.32494 * 269.68679 * 19 18 16 21 21 C 1.28878 * 108.11367 * 180.02562 * 20 19 18 22 22 N 1.38006 * 108.81702 * 1.12934 * 21 20 19 23 23 C 1.34305 * 108.33522 * 358.31499 * 22 21 20 24 24 O 1.21813 * 126.32397 * 181.52836 * 23 22 21 25 25 C 1.46724 * 124.16089 * 177.44854 * 22 21 20 26 26 C 1.53291 * 108.64891 * 19.61259 * 25 22 21 27 27 C 1.53229 * 109.36752 * 308.13885 * 26 25 22 28 28 C 1.51107 * 127.46268 * 181.74065 * 21 20 19 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 0.97010 * 119.99864 * 180.02562 * 10 9 7 38 38 H 0.97003 * 120.00235 * 265.00555 * 15 2 1 39 39 H 1.08997 * 109.47334 * 300.00478 * 18 16 15 40 40 H 1.09008 * 109.47061 * 60.00564 * 18 16 15 41 41 H 1.08998 * 109.60519 * 139.35618 * 25 22 21 42 42 H 1.08998 * 109.60908 * 259.69256 * 25 22 21 43 43 H 1.08994 * 109.49042 * 68.11131 * 26 25 22 44 44 H 1.09001 * 109.48312 * 188.17344 * 26 25 22 45 45 H 1.08999 * 109.54445 * 190.53744 * 27 26 25 46 46 H 1.09005 * 109.54652 * 310.81143 * 27 26 25 47 47 H 1.09005 * 109.75217 * 78.01631 * 28 21 20 48 48 H 1.09000 * 109.79827 * 317.30375 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3952 -1.3405 2.7793 8 1 6.0937 -0.8603 2.1100 9 6 5.8579 -1.9949 3.9126 10 7 7.1479 -2.0298 4.1718 11 14 4.6499 -2.8261 5.0699 12 1 4.4448 -4.2338 4.6438 13 1 5.1916 -2.8012 6.4524 14 1 3.3528 -2.1040 5.0335 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1589 -2.4114 18 6 2.6498 -0.7281 -3.5876 19 7 2.6983 0.2132 -4.7092 20 7 1.6664 0.4689 -5.6249 21 6 2.0846 1.3542 -6.4629 22 7 3.3872 1.6844 -6.1486 23 6 3.7466 0.9918 -5.0555 24 8 4.8196 1.0541 -4.4822 25 6 4.2084 2.6237 -6.9208 26 6 3.2816 3.5040 -7.7669 27 6 2.3262 2.6131 -8.5679 28 6 1.3154 1.9725 -7.6071 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.4258 -1.7353 3.1108 37 1 7.4713 -2.4876 4.9637 38 1 2.2489 -1.6317 -1.1529 39 1 3.6491 -1.1200 -3.3981 40 1 1.9775 -1.5504 -3.8328 41 1 4.7862 3.2492 -6.2404 42 1 4.8846 2.0690 -7.5713 43 1 2.7059 4.1593 -7.1134 44 1 3.8781 4.1061 -8.4524 45 1 1.7967 3.2166 -9.3051 46 1 2.8938 1.8320 -9.0738 47 1 0.6363 2.7349 -7.2251 48 1 0.7479 1.2023 -8.1294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716184775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:52 Heat of formation + Delta-G solvation = -15.878594 kcal Electronic energy + Delta-G solvation = -29201.247992 eV Core-core repulsion = 25099.086984 eV Total energy + Delta-G solvation = -4102.161009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.66974 -40.97956 -38.87164 -38.15450 -37.68846 -36.24378 -34.54561 -33.87250 -33.57816 -32.39949 -30.00270 -29.73660 -28.84295 -25.82523 -25.35075 -23.65805 -23.45315 -23.01311 -22.12297 -21.60360 -20.69422 -19.76564 -18.72191 -18.47564 -17.73540 -17.35002 -16.98451 -16.82192 -16.56768 -16.19563 -15.82622 -15.69024 -15.27307 -15.24747 -15.17661 -14.95280 -14.75628 -14.38086 -14.29214 -14.04331 -14.00230 -13.50771 -13.27385 -13.12336 -12.98994 -12.97748 -12.92091 -12.42178 -12.24977 -12.09524 -12.03745 -11.89310 -11.86786 -11.85659 -11.78356 -11.49113 -11.37587 -11.01456 -10.78727 -10.18595 -9.67596 -9.35055 -8.05794 -5.41496 0.56614 0.92212 1.36695 1.42498 1.44167 1.47023 1.49914 1.92969 2.21898 2.46939 3.19956 3.24677 3.39398 3.55211 3.65452 3.73860 3.83197 3.91309 3.98565 4.06523 4.08778 4.21371 4.31768 4.36938 4.44047 4.50096 4.54267 4.57168 4.71820 4.77249 4.81380 4.86405 4.88758 4.95355 4.99790 5.05497 5.14207 5.17188 5.21036 5.28855 5.34533 5.48449 5.59371 5.70667 6.17523 6.42861 6.52966 6.84929 7.04263 7.11930 7.77897 8.00868 9.15933 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.002193 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.861794 B =12764.508035 C =13742.152765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.150 3.850 3 H 0.058 0.942 4 C -0.121 4.121 5 C 0.154 3.846 6 N -0.755 5.755 7 C -0.244 4.244 8 H 0.045 0.955 9 C -0.069 4.069 10 N -0.986 5.986 11 Si 0.967 3.033 12 H -0.271 1.271 13 H -0.296 1.296 14 H -0.247 1.247 15 N -0.706 5.706 16 C 0.496 3.504 17 O -0.577 6.577 18 C 0.139 3.861 19 N -0.445 5.445 20 N -0.296 5.296 21 C 0.285 3.715 22 N -0.554 5.554 23 C 0.634 3.366 24 O -0.601 6.601 25 C 0.117 3.883 26 C -0.130 4.130 27 C -0.117 4.117 28 C -0.039 4.039 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.003 0.997 35 H 0.026 0.974 36 H 0.370 0.630 37 H 0.259 0.741 38 H 0.417 0.583 39 H 0.131 0.869 40 H 0.165 0.835 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.153 6.355 -31.127 37.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.076 0.924 4 C -0.159 4.159 5 C 0.028 3.972 6 N -0.402 5.402 7 C -0.375 4.375 8 H 0.063 0.937 9 C -0.260 4.260 10 N -0.636 5.636 11 Si 0.793 3.207 12 H -0.197 1.197 13 H -0.223 1.223 14 H -0.171 1.171 15 N -0.359 5.359 16 C 0.282 3.718 17 O -0.456 6.456 18 C 0.014 3.986 19 N -0.263 5.263 20 N -0.118 5.118 21 C 0.007 3.993 22 N -0.282 5.282 23 C 0.333 3.667 24 O -0.478 6.478 25 C -0.004 4.004 26 C -0.167 4.167 27 C -0.155 4.155 28 C -0.079 4.079 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.021 0.979 35 H 0.044 0.956 36 H 0.204 0.796 37 H 0.068 0.932 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.182 0.818 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.097 0.903 47 H 0.134 0.866 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.130 6.653 -30.462 37.113 hybrid contribution 1.262 -0.348 1.364 1.891 sum -18.867 6.305 -29.098 35.248 Atomic orbital electron populations 1.22050 0.92967 1.03394 1.02293 1.20848 0.95236 0.96116 0.83272 0.92358 1.21968 0.93646 1.02700 0.97564 1.20753 0.93998 0.94061 0.88421 1.42635 1.03434 1.66665 1.27435 1.18998 0.83967 1.28382 1.06107 0.93683 1.25682 0.97880 1.01991 1.00427 1.69926 1.14484 1.49670 1.29492 0.85241 0.79077 0.78949 0.77454 1.19717 1.22281 1.17095 1.45950 1.66447 1.14869 1.08652 1.21310 0.77292 0.87368 0.85845 1.90690 1.51614 1.17766 1.85579 1.21475 1.06685 0.90207 0.80259 1.48465 1.10921 1.39808 1.27153 1.76722 1.12454 1.19820 1.02831 1.25389 0.83621 0.92616 0.97637 1.46305 1.14370 1.41291 1.26238 1.16902 0.85026 0.82149 0.82646 1.91055 1.24690 1.71695 1.60373 1.22197 0.93694 0.90335 0.94132 1.22028 0.98232 0.97555 0.98916 1.21764 0.96609 0.99811 0.97326 1.20893 0.96841 1.01309 0.88820 0.93689 0.90257 0.90395 0.88700 0.89209 0.97914 0.95637 0.79599 0.93198 0.74524 0.85100 0.81774 0.90721 0.88726 0.90912 0.86124 0.86203 0.90333 0.86561 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.48 71.98 0.68 -2.37 16 2 C 0.15 3.88 2.57 44.99 0.12 4.00 16 3 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 4 C -0.12 -3.26 4.87 30.59 0.15 -3.11 16 5 C 0.15 6.07 6.15 86.38 0.53 6.60 16 6 N -0.76 -36.13 5.41 -343.45 -1.86 -37.99 16 7 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 8 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 9 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 10 N -0.99 -65.12 13.97 21.65 0.30 -64.82 16 11 Si 0.97 45.62 27.74 68.60 1.90 47.52 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 14 H -0.25 -10.29 6.52 99.48 0.65 -9.64 16 15 N -0.71 -16.88 4.53 -442.55 -2.00 -18.89 16 16 C 0.50 14.35 7.86 87.66 0.69 15.04 16 17 O -0.58 -22.12 16.09 -3.07 -0.05 -22.17 16 18 C 0.14 3.23 6.87 85.63 0.59 3.81 16 19 N -0.45 -12.71 3.12 -481.98 -1.50 -14.22 16 20 N -0.30 -7.13 12.51 -49.12 -0.61 -7.75 16 21 C 0.29 5.26 7.73 137.75 1.06 6.33 16 22 N -0.55 -12.69 3.13 -644.26 -2.02 -14.71 16 23 C 0.63 20.73 8.64 179.10 1.55 22.28 16 24 O -0.60 -24.76 17.83 -4.71 -0.08 -24.84 16 25 C 0.12 1.70 6.88 86.43 0.59 2.29 16 26 C -0.13 -0.68 5.94 30.77 0.18 -0.49 16 27 C -0.12 -0.20 5.96 30.83 0.18 -0.01 16 28 C -0.04 -0.24 6.32 30.14 0.19 -0.04 16 29 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.03 1.02 7.75 -2.39 -0.02 1.00 16 36 H 0.37 16.20 5.53 -92.71 -0.51 15.69 16 37 H 0.26 16.17 8.31 -92.70 -0.77 15.40 16 38 H 0.42 7.52 8.60 -92.71 -0.80 6.72 16 39 H 0.13 2.90 8.12 -2.39 -0.02 2.88 16 40 H 0.16 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 0.50 8.10 -2.39 -0.02 0.48 16 44 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.08 0.14 8.11 -2.38 -0.02 0.12 16 47 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 48 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -96.72 396.30 1.55 -95.17 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.39 Total: 25.78 kcal Atomic # 6 Polarization: 29.04 SS G_CDS: 7.87 Total: 36.90 kcal Atomic # 7 Polarization: -150.67 SS G_CDS: -7.70 Total: -158.37 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.13 Total: -47.01 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -96.72 1.55 -95.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716184775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.294 kcal (2) G-P(sol) polarization free energy of solvation -96.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds