Wall clock time and date at job start Tue Mar 31 2020 20:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47133 * 2 1 4 4 C 1.35844 * 126.13267 * 269.99514 * 3 2 1 5 5 N 1.30176 * 109.00376 * 179.76132 * 4 3 2 6 6 C 1.35762 * 108.86509 * 0.38721 * 5 4 3 7 7 C 1.47317 * 126.23669 * 179.87928 * 6 5 4 8 8 O 1.21625 * 120.00213 * 179.69256 * 7 6 5 9 9 N 1.34781 * 119.99936 * 359.68827 * 7 6 5 10 10 C 1.46500 * 119.99732 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47381 * 35.00069 * 10 9 7 12 12 C 1.53006 * 109.47249 * 274.99921 * 10 9 7 13 13 C 1.52999 * 109.46944 * 155.00564 * 10 9 7 14 14 C 1.53009 * 109.46984 * 294.99645 * 13 10 9 15 15 N 1.46892 * 109.47144 * 180.02562 * 14 13 10 16 16 C 1.46899 * 110.99761 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47014 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00029 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99962 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00011 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00031 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99847 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99587 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00172 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47049 * 89.99932 * 24 22 20 26 26 H 1.48497 * 109.46798 * 210.00289 * 24 22 20 27 27 H 1.48505 * 109.46843 * 329.99583 * 24 22 20 28 28 C 1.35378 * 126.13697 * 90.00000 * 3 2 1 29 29 H 1.08996 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47152 * 300.00343 * 1 2 3 31 31 H 1.09001 * 109.46897 * 60.00285 * 1 2 3 32 32 H 1.09001 * 109.47152 * 239.99657 * 2 1 3 33 33 H 1.09001 * 109.46897 * 119.99715 * 2 1 3 34 34 H 1.08004 * 125.50116 * 0.03275 * 4 3 2 35 35 H 0.96998 * 119.99903 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 37 37 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 39 39 H 1.08997 * 109.47756 * 54.99315 * 13 10 9 40 40 H 1.09001 * 109.47317 * 175.00198 * 13 10 9 41 41 H 1.08999 * 109.47112 * 300.00392 * 14 13 10 42 42 H 1.09001 * 109.46642 * 60.00139 * 14 13 10 43 43 H 1.00903 * 111.00134 * 303.95062 * 15 14 13 44 44 H 1.08995 * 109.47488 * 299.99671 * 16 15 14 45 45 H 1.09002 * 109.47423 * 60.00461 * 16 15 14 46 46 H 0.97004 * 120.00087 * 0.02562 * 19 17 16 47 47 H 0.96998 * 119.99717 * 180.02562 * 23 22 20 48 48 H 1.07997 * 126.56422 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2855 2.1364 -1.0971 5 7 2.6953 3.3110 -0.7138 6 6 2.7138 3.3481 0.6432 7 6 3.1178 4.4930 1.4776 8 8 3.0854 4.4033 2.6901 9 7 3.5235 5.6398 0.8974 10 6 3.9247 6.7785 1.7272 11 1 4.4206 6.4153 2.6274 12 6 2.6855 7.5864 2.1182 13 6 4.8867 7.6699 0.9392 14 6 6.1786 6.9005 0.6558 15 7 7.1025 7.7564 -0.1001 16 6 8.3570 7.0493 -0.3904 17 6 9.2772 7.9566 -1.1657 18 8 8.9231 9.0817 -1.4482 19 7 10.4942 7.5182 -1.5442 20 6 11.3315 8.3438 -2.2491 21 1 11.0159 9.3453 -2.5014 22 6 12.5860 7.8915 -2.6398 23 7 13.3884 8.6827 -3.3159 24 14 13.1312 6.1585 -2.2053 25 1 12.7315 5.2271 -3.2906 26 1 14.6073 6.1292 -2.0464 27 1 12.4881 5.7416 -0.9333 28 6 2.2845 2.1339 1.0933 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1716 1.8157 -2.1222 35 1 3.5490 5.7115 -0.0696 36 1 2.0001 6.9514 2.6795 37 1 2.9841 8.4338 2.7352 38 1 2.1897 7.9496 1.2180 39 1 4.4231 7.9609 -0.0033 40 1 5.1157 8.5619 1.5223 41 1 6.6423 6.6094 1.5984 42 1 5.9496 6.0084 0.0728 43 1 6.6719 8.0925 -0.9485 44 1 8.8354 6.7593 0.5450 45 1 8.1437 6.1583 -0.9809 46 1 10.7776 6.6185 -1.3180 47 1 14.2639 8.3669 -3.5889 48 1 2.1771 1.8313 2.1244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716187774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:12 Heat of formation + Delta-G solvation = -43.932298 kcal Electronic energy + Delta-G solvation = -27955.323495 eV Core-core repulsion = 23851.945986 eV Total energy + Delta-G solvation = -4103.377509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.14999 -40.59359 -40.27796 -37.91941 -36.29502 -35.93693 -35.71568 -33.75588 -32.72660 -31.26045 -30.68683 -30.10648 -27.88778 -25.74798 -25.20302 -24.20179 -23.17492 -22.03624 -21.66884 -21.26402 -21.14483 -20.25863 -18.85128 -17.81187 -17.51111 -17.20197 -17.00087 -16.66686 -16.49035 -15.83841 -15.75179 -15.50583 -15.34680 -15.05056 -14.97348 -14.86313 -14.70121 -14.61065 -14.46740 -14.04969 -13.85327 -13.62396 -13.48267 -13.22674 -12.99597 -12.95453 -12.81302 -12.42369 -12.26132 -12.22366 -12.06087 -11.97784 -11.79415 -11.52038 -11.34501 -11.02578 -10.75734 -10.45810 -10.25446 -10.12597 -9.59518 -9.33513 -8.41679 -6.02538 0.58161 1.30227 1.34771 1.44042 1.45256 1.70946 1.94259 2.22527 2.34053 2.55900 2.69334 3.14519 3.35921 3.45071 3.77156 3.88766 3.90263 4.03083 4.09959 4.14879 4.18540 4.23486 4.41465 4.41824 4.43789 4.45052 4.50367 4.60776 4.69241 4.70997 4.83714 4.84278 4.95425 5.10483 5.13117 5.19439 5.22732 5.31955 5.44990 5.52256 5.58338 5.89780 6.03372 6.11608 6.39211 6.51898 6.59171 6.87177 6.87802 7.26941 7.38748 7.94947 8.75924 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.002006 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.816523 B =13952.093900 C =15718.008766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.193 3.807 5 N -0.497 5.497 6 C -0.100 4.100 7 C 0.600 3.400 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.077 0.923 12 C -0.156 4.156 13 C -0.114 4.114 14 C 0.065 3.935 15 N -0.684 5.684 16 C 0.061 3.939 17 C 0.449 3.551 18 O -0.612 6.612 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.056 0.944 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.234 1.234 28 C 0.039 3.961 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.411 0.589 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.346 0.654 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.866 -25.079 8.591 39.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.091 4.091 5 N -0.216 5.216 6 C -0.228 4.228 7 C 0.388 3.612 8 O -0.463 6.463 9 N -0.354 5.354 10 C 0.043 3.957 11 H 0.095 0.905 12 C -0.214 4.214 13 C -0.152 4.152 14 C -0.064 4.064 15 N -0.317 5.317 16 C -0.071 4.071 17 C 0.237 3.763 18 O -0.497 6.497 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.074 0.926 22 C -0.213 4.213 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.157 1.157 28 C -0.102 4.102 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.261 0.739 35 H 0.247 0.753 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.165 0.835 44 H 0.128 0.872 45 H 0.092 0.908 46 H 0.225 0.775 47 H 0.089 0.911 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -28.495 -23.482 9.192 38.051 hybrid contribution 0.333 -1.465 -0.719 1.665 sum -28.162 -24.947 8.473 38.565 Atomic orbital electron populations 1.22160 0.93428 1.04425 1.02524 1.22333 0.96034 0.77235 1.07146 1.45801 1.47142 1.14277 1.05757 1.25886 1.01531 0.86557 0.95157 1.70553 1.19589 1.21393 1.10062 1.20547 1.15000 0.96139 0.91143 1.17200 0.75944 0.81942 0.86145 1.90754 1.56982 1.83832 1.14760 1.45908 1.66014 1.12396 1.11068 1.20949 0.95230 0.85497 0.94038 0.90473 1.22101 0.97158 1.00075 1.02069 1.21772 0.93318 0.98645 1.01496 1.21982 0.92368 0.93895 0.98137 1.60069 1.04692 1.39081 1.27813 1.21617 0.91032 0.94164 1.00285 1.20937 0.83105 0.88873 0.83391 1.90536 1.76121 1.22869 1.60150 1.42038 1.14853 1.15068 1.51297 1.19023 0.97208 0.97741 1.31933 0.92587 1.26112 0.95051 1.04120 0.96040 1.69803 1.10004 1.38987 1.38557 0.85370 0.78815 0.76926 0.80456 1.18025 1.19879 1.15717 1.22779 1.01629 0.91451 0.94380 0.88371 0.93118 0.92059 0.85822 0.87395 0.73861 0.75290 0.93559 0.90142 0.91697 0.90469 0.89034 0.90990 0.94718 0.83540 0.87243 0.90842 0.77520 0.91108 0.78671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.16 10.24 71.98 0.74 0.58 16 2 C 0.09 0.08 6.84 86.38 0.59 0.67 16 3 N -0.45 -4.20 2.72 -528.38 -1.44 -5.64 16 4 C 0.19 2.24 12.55 180.10 2.26 4.50 16 5 N -0.50 -9.71 11.01 -188.82 -2.08 -11.79 16 6 C -0.10 -2.15 6.98 40.50 0.28 -1.87 16 7 C 0.60 15.00 7.78 86.63 0.67 15.67 16 8 O -0.58 -17.61 16.54 -4.11 -0.07 -17.68 16 9 N -0.70 -14.94 4.53 -445.88 -2.02 -16.96 16 10 C 0.15 2.95 2.57 44.99 0.12 3.07 16 11 H 0.08 1.78 7.58 -2.39 -0.02 1.76 16 12 C -0.16 -2.81 9.48 71.98 0.68 -2.12 16 13 C -0.11 -2.24 5.01 30.60 0.15 -2.08 16 14 C 0.06 1.51 5.57 86.31 0.48 1.99 16 15 N -0.68 -21.05 6.13 -517.93 -3.17 -24.22 16 16 C 0.06 2.00 6.17 85.56 0.53 2.53 16 17 C 0.45 20.97 7.82 87.66 0.69 21.66 16 18 O -0.61 -34.78 15.78 -3.04 -0.05 -34.82 16 19 N -0.59 -28.68 5.09 -306.98 -1.56 -30.24 16 20 C -0.33 -19.71 10.16 84.04 0.85 -18.86 16 21 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 22 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.93 -56.85 13.96 21.66 0.30 -56.54 16 24 Si 0.96 39.47 27.74 68.60 1.90 41.37 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.23 -8.17 6.52 99.48 0.65 -7.53 16 28 C 0.04 0.60 11.26 83.72 0.94 1.55 16 29 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.12 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.25 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.41 8.17 8.32 -92.71 -0.77 7.40 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 0.78 7.75 -2.39 -0.02 0.76 16 43 H 0.35 11.11 8.43 -89.69 -0.76 10.35 16 44 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.39 15.73 5.76 -92.71 -0.53 15.20 16 47 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 48 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -86.82 407.65 0.15 -86.67 By element: Atomic # 1 Polarization: 44.04 SS G_CDS: -1.13 Total: 42.92 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 9.45 Total: 26.94 kcal Atomic # 7 Polarization: -135.42 SS G_CDS: -9.97 Total: -145.39 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.12 Total: -52.50 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.90 Total: 41.37 kcal Total: -86.82 0.15 -86.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716187774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.738 kcal (2) G-P(sol) polarization free energy of solvation -86.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds