Wall clock time and date at job start Tue Mar 31 2020 20:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.47092 * 2 1 4 4 C 1.35844 * 126.13231 * 270.00469 * 3 2 1 5 5 N 1.30177 * 108.99799 * 179.75942 * 4 3 2 6 6 C 1.35757 * 108.86736 * 0.38360 * 5 4 3 7 7 C 1.47324 * 126.23470 * 179.88147 * 6 5 4 8 8 O 1.21622 * 120.00039 * 179.68447 * 7 6 5 9 9 N 1.34777 * 119.99740 * 359.68681 * 7 6 5 10 10 C 1.46500 * 119.99764 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47545 * 325.00066 * 10 9 7 12 12 C 1.53002 * 109.47386 * 85.00050 * 10 9 7 13 13 C 1.53004 * 109.47376 * 204.99868 * 10 9 7 14 14 C 1.53008 * 109.46689 * 65.00004 * 13 10 9 15 15 N 1.46902 * 109.46622 * 180.02562 * 14 13 10 16 16 C 1.46906 * 110.99573 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46990 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99883 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00013 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99812 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99796 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00211 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99595 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47053 * 60.00400 * 24 22 20 26 26 H 1.48506 * 109.47074 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47549 * 300.00343 * 24 22 20 28 28 C 1.35374 * 126.13248 * 90.00318 * 3 2 1 29 29 H 1.09000 * 109.46535 * 299.99523 * 1 2 3 30 30 H 1.08995 * 109.47422 * 59.99796 * 1 2 3 31 31 H 1.09002 * 109.46828 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47003 * 239.99904 * 2 1 3 33 33 H 1.09004 * 109.47127 * 120.00158 * 2 1 3 34 34 H 1.07995 * 125.50204 * 0.02562 * 4 3 2 35 35 H 0.96995 * 120.00542 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.47436 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.47014 * 300.00362 * 12 10 9 38 38 H 1.09000 * 109.46766 * 59.99538 * 12 10 9 39 39 H 1.09006 * 109.46807 * 305.00363 * 13 10 9 40 40 H 1.08995 * 109.47458 * 184.99980 * 13 10 9 41 41 H 1.08990 * 109.46924 * 60.00331 * 14 13 10 42 42 H 1.09004 * 109.46978 * 300.00208 * 14 13 10 43 43 H 1.00896 * 111.00219 * 303.95583 * 15 14 13 44 44 H 1.09002 * 109.46991 * 299.99841 * 16 15 14 45 45 H 1.09000 * 109.47202 * 60.00133 * 16 15 14 46 46 H 0.97000 * 120.00083 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00198 * 179.97438 * 23 22 20 48 48 H 1.08000 * 126.57005 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2853 2.1365 -1.0972 5 7 2.6951 3.3110 -0.7136 6 6 2.7137 3.3480 0.6433 7 6 3.1178 4.4930 1.4778 8 8 3.0853 4.4032 2.6902 9 7 3.5233 5.6398 0.8975 10 6 3.9246 6.7785 1.7273 11 1 3.3089 6.8079 2.6263 12 6 5.3955 6.6294 2.1212 13 6 3.7370 8.0759 0.9382 14 6 2.2490 8.2880 0.6519 15 7 2.0690 9.5333 -0.1062 16 6 0.6492 9.7699 -0.4004 17 6 0.5043 11.0528 -1.1777 18 8 1.4870 11.7055 -1.4595 19 7 -0.7171 11.4743 -1.5608 20 6 -0.8490 12.6417 -2.2676 21 1 0.0258 13.2236 -2.5170 22 6 -2.1084 13.0765 -2.6621 23 7 -3.1731 12.3691 -2.3573 24 14 -2.2881 14.6674 -3.6244 25 1 -1.5293 14.5646 -4.8968 26 1 -3.7232 14.9062 -3.9225 27 1 -1.7547 15.7957 -2.8197 28 6 2.2845 2.1338 1.0934 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.1715 1.8158 -2.1221 35 1 3.5496 5.7113 -0.0695 36 1 5.6941 7.4769 2.7382 37 1 5.5292 5.7052 2.6834 38 1 6.0111 6.6001 1.2222 39 1 4.2824 8.0106 -0.0033 40 1 4.1179 8.9142 1.5214 41 1 1.7037 8.3533 1.5933 42 1 1.8681 7.4496 0.0687 43 1 2.4724 10.3171 0.3846 44 1 0.2575 8.9416 -0.9907 45 1 0.0924 9.8458 0.5336 46 1 -1.5030 10.9521 -1.3358 47 1 -4.0523 12.6728 -2.6323 48 1 2.1772 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716187775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:15 Heat of formation + Delta-G solvation = -22.473313 kcal Electronic energy + Delta-G solvation = -27916.592398 eV Core-core repulsion = 23814.145420 eV Total energy + Delta-G solvation = -4102.446977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53280 -39.62345 -38.24277 -36.77516 -35.48705 -34.86377 -33.76422 -31.79961 -31.16620 -30.75012 -29.84529 -29.07744 -26.16583 -24.82966 -24.07389 -23.52402 -22.09336 -21.38742 -20.84936 -20.28046 -19.17198 -18.24083 -17.82191 -16.64144 -16.37932 -16.05752 -15.96085 -15.45673 -15.13737 -14.79415 -14.52559 -14.47473 -14.33103 -14.16520 -13.90526 -13.74126 -13.65328 -13.52132 -13.12888 -13.02472 -12.76933 -12.55019 -12.18466 -12.13301 -12.02924 -11.59012 -11.44369 -11.14683 -11.13379 -10.97096 -10.80697 -10.59564 -10.40990 -10.17699 -10.17157 -10.10821 -9.45631 -9.19095 -8.88070 -8.39807 -7.98031 -7.90642 -6.37266 -3.78035 1.31630 2.12578 2.19394 3.18108 3.23396 3.28450 3.33213 3.42421 3.96569 3.99088 4.10612 4.13593 4.28013 4.32974 4.34699 4.53745 4.80310 4.94175 4.94988 4.96851 4.99454 5.07383 5.18447 5.21782 5.29793 5.41988 5.42262 5.48912 5.64102 5.67697 5.71446 5.78275 5.88839 6.03498 6.06961 6.09792 6.10800 6.20877 6.33806 6.48509 6.63188 7.30208 7.33817 7.59145 7.63472 7.75941 8.10994 8.19861 8.66350 9.22255 9.59408 10.11204 10.80528 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.001938 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.501964 B =14445.702907 C =16321.734596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.187 3.813 5 N -0.461 5.461 6 C -0.064 4.064 7 C 0.605 3.395 8 O -0.550 6.550 9 N -0.708 5.708 10 C 0.143 3.857 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.125 4.125 14 C 0.059 3.941 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.033 3.967 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.211 0.789 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.348 0.652 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.467 -28.299 7.233 30.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.097 4.097 5 N -0.179 5.179 6 C -0.193 4.193 7 C 0.391 3.609 8 O -0.428 6.428 9 N -0.359 5.359 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.163 4.163 14 C -0.071 4.071 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.106 4.106 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.227 0.773 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.167 0.833 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.207 -27.602 6.733 30.189 hybrid contribution -1.383 -0.051 0.443 1.453 sum 8.825 -27.653 7.175 29.901 Atomic orbital electron populations 1.22192 0.93616 1.03529 1.03693 1.21979 0.96012 0.79241 1.05120 1.45566 1.48343 1.13222 1.06846 1.25195 1.03466 0.87363 0.93661 1.70634 1.17876 1.19138 1.10292 1.20594 1.12527 0.95540 0.90611 1.16889 0.76243 0.81429 0.86297 1.90783 1.55689 1.82888 1.13447 1.45911 1.66405 1.12511 1.11093 1.20991 0.95984 0.84663 0.94517 0.89394 1.22158 0.95638 1.02425 1.01751 1.21870 0.97095 0.96103 1.01238 1.21967 0.95533 0.93646 0.95912 1.60073 1.14878 1.04967 1.50200 1.21662 0.89372 0.98216 0.98938 1.19829 0.84233 0.87720 0.85475 1.90514 1.37781 1.58310 1.60127 1.41863 1.06608 1.22570 1.49113 1.19661 0.94206 0.99117 1.29859 0.87974 1.25266 0.94882 0.99597 0.98285 1.69609 0.98641 1.39233 1.46949 0.85912 0.76955 0.81399 0.79904 1.19889 1.21019 1.19938 1.22574 1.02839 0.91920 0.93241 0.91588 0.91453 0.90231 0.88344 0.88684 0.77268 0.75407 0.91513 0.92199 0.92304 0.90132 0.90222 0.95616 0.91021 0.83292 0.89681 0.93976 0.77462 0.91867 0.79693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.24 37.16 0.38 -0.06 16 2 C 0.10 0.23 6.84 -4.04 -0.03 0.20 16 3 N -0.46 -2.87 2.73 -118.36 -0.32 -3.19 16 4 C 0.19 1.40 12.55 -89.91 -1.13 0.27 16 5 N -0.46 -5.05 11.01 -11.03 -0.12 -5.17 16 6 C -0.06 -0.73 6.98 -83.09 -0.58 -1.31 16 7 C 0.61 7.86 7.78 -12.56 -0.10 7.76 16 8 O -0.55 -8.41 16.54 5.26 0.09 -8.32 16 9 N -0.71 -8.13 4.53 -54.91 -0.25 -8.38 16 10 C 0.14 1.55 2.57 -67.93 -0.17 1.37 16 11 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 12 C -0.16 -1.56 9.48 37.16 0.35 -1.20 16 13 C -0.12 -1.38 5.01 -26.72 -0.13 -1.51 16 14 C 0.06 0.79 5.57 -3.82 -0.02 0.77 16 15 N -0.67 -11.39 6.12 -115.05 -0.70 -12.09 16 16 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 17 C 0.44 10.84 7.82 -10.99 -0.09 10.75 16 18 O -0.58 -16.30 15.78 5.55 0.09 -16.21 16 19 N -0.56 -14.78 5.29 -10.97 -0.06 -14.84 16 20 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 24 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.03 0.29 11.26 -16.64 -0.19 0.10 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 33 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.41 4.57 8.32 -40.82 -0.34 4.23 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.99 7.75 -51.93 -0.40 0.58 16 43 H 0.35 6.01 8.43 -39.29 -0.33 5.68 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 47 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 410.77 15.07 6.19 6.19 Total: -1.00 -36.07 410.77 -9.01 -45.07 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -7.64 Total: 14.98 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -1.98 Total: 9.88 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.73 Total: -68.01 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.17 Total: -24.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.07 -9.01 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716187775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.599 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds