Wall clock time and date at job start Tue Mar 31 2020 20:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.47092 * 2 1 4 4 C 1.35844 * 126.13231 * 270.00469 * 3 2 1 5 5 N 1.30177 * 108.99799 * 179.75942 * 4 3 2 6 6 C 1.35757 * 108.86736 * 0.38360 * 5 4 3 7 7 C 1.47324 * 126.23470 * 179.88147 * 6 5 4 8 8 O 1.21622 * 120.00039 * 179.68447 * 7 6 5 9 9 N 1.34777 * 119.99740 * 359.68681 * 7 6 5 10 10 C 1.46500 * 119.99764 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47545 * 325.00066 * 10 9 7 12 12 C 1.53002 * 109.47386 * 85.00050 * 10 9 7 13 13 C 1.53004 * 109.47376 * 204.99868 * 10 9 7 14 14 C 1.53008 * 109.46689 * 65.00004 * 13 10 9 15 15 N 1.46902 * 109.46622 * 180.02562 * 14 13 10 16 16 C 1.46906 * 110.99573 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46990 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99883 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00013 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99812 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99796 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00211 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99595 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47053 * 60.00400 * 24 22 20 26 26 H 1.48506 * 109.47074 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47549 * 300.00343 * 24 22 20 28 28 C 1.35374 * 126.13248 * 90.00318 * 3 2 1 29 29 H 1.09000 * 109.46535 * 299.99523 * 1 2 3 30 30 H 1.08995 * 109.47422 * 59.99796 * 1 2 3 31 31 H 1.09002 * 109.46828 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47003 * 239.99904 * 2 1 3 33 33 H 1.09004 * 109.47127 * 120.00158 * 2 1 3 34 34 H 1.07995 * 125.50204 * 0.02562 * 4 3 2 35 35 H 0.96995 * 120.00542 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.47436 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.47014 * 300.00362 * 12 10 9 38 38 H 1.09000 * 109.46766 * 59.99538 * 12 10 9 39 39 H 1.09006 * 109.46807 * 305.00363 * 13 10 9 40 40 H 1.08995 * 109.47458 * 184.99980 * 13 10 9 41 41 H 1.08990 * 109.46924 * 60.00331 * 14 13 10 42 42 H 1.09004 * 109.46978 * 300.00208 * 14 13 10 43 43 H 1.00896 * 111.00219 * 303.95583 * 15 14 13 44 44 H 1.09002 * 109.46991 * 299.99841 * 16 15 14 45 45 H 1.09000 * 109.47202 * 60.00133 * 16 15 14 46 46 H 0.97000 * 120.00083 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00198 * 179.97438 * 23 22 20 48 48 H 1.08000 * 126.57005 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2853 2.1365 -1.0972 5 7 2.6951 3.3110 -0.7136 6 6 2.7137 3.3480 0.6433 7 6 3.1178 4.4930 1.4778 8 8 3.0853 4.4032 2.6902 9 7 3.5233 5.6398 0.8975 10 6 3.9246 6.7785 1.7273 11 1 3.3089 6.8079 2.6263 12 6 5.3955 6.6294 2.1212 13 6 3.7370 8.0759 0.9382 14 6 2.2490 8.2880 0.6519 15 7 2.0690 9.5333 -0.1062 16 6 0.6492 9.7699 -0.4004 17 6 0.5043 11.0528 -1.1777 18 8 1.4870 11.7055 -1.4595 19 7 -0.7171 11.4743 -1.5608 20 6 -0.8490 12.6417 -2.2676 21 1 0.0258 13.2236 -2.5170 22 6 -2.1084 13.0765 -2.6621 23 7 -3.1731 12.3691 -2.3573 24 14 -2.2881 14.6674 -3.6244 25 1 -1.5293 14.5646 -4.8968 26 1 -3.7232 14.9062 -3.9225 27 1 -1.7547 15.7957 -2.8197 28 6 2.2845 2.1338 1.0934 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.1715 1.8158 -2.1221 35 1 3.5496 5.7113 -0.0695 36 1 5.6941 7.4769 2.7382 37 1 5.5292 5.7052 2.6834 38 1 6.0111 6.6001 1.2222 39 1 4.2824 8.0106 -0.0033 40 1 4.1179 8.9142 1.5214 41 1 1.7037 8.3533 1.5933 42 1 1.8681 7.4496 0.0687 43 1 2.4724 10.3171 0.3846 44 1 0.2575 8.9416 -0.9907 45 1 0.0924 9.8458 0.5336 46 1 -1.5030 10.9521 -1.3358 47 1 -4.0523 12.6728 -2.6323 48 1 2.1772 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716187775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:15 Heat of formation + Delta-G solvation = -48.788758 kcal Electronic energy + Delta-G solvation = -27917.733521 eV Core-core repulsion = 23814.145420 eV Total energy + Delta-G solvation = -4103.588101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.13995 -40.57687 -40.14327 -37.90617 -36.27567 -35.92738 -35.67965 -33.29331 -32.69798 -31.25246 -30.65295 -30.07512 -27.79437 -25.88946 -25.23802 -24.19843 -23.20853 -22.02765 -21.65562 -21.15569 -21.03309 -19.91396 -18.84821 -17.85726 -17.50243 -17.08342 -16.97300 -16.62644 -16.45972 -15.97078 -15.66167 -15.54163 -15.39579 -15.08111 -14.99307 -14.87346 -14.63969 -14.60471 -14.30447 -13.86662 -13.63729 -13.49257 -13.45138 -13.20724 -12.97742 -12.92140 -12.79543 -12.44005 -12.22603 -12.21533 -12.12305 -12.11034 -11.77609 -11.50462 -11.33287 -11.01548 -10.74823 -10.36583 -10.11439 -10.02671 -9.58238 -9.35535 -8.46747 -5.96016 0.58873 1.40192 1.41714 1.46198 1.53197 1.72232 2.03757 2.29116 2.35099 2.56798 2.87502 3.19997 3.44710 3.49285 3.78104 3.90673 3.94768 4.02881 4.10341 4.10816 4.21343 4.31781 4.41804 4.42033 4.45505 4.49687 4.51768 4.61935 4.67678 4.71304 4.84313 4.85838 4.90931 5.07955 5.13959 5.20868 5.23699 5.32247 5.40382 5.46098 5.58432 5.87199 6.08257 6.12775 6.40831 6.52889 6.59079 6.89117 7.11442 7.27430 7.54740 8.09757 8.70539 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.001938 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.501964 B =14445.702907 C =16321.734596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.449 5.449 4 C 0.193 3.807 5 N -0.497 5.497 6 C -0.101 4.101 7 C 0.600 3.400 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.147 3.853 11 H 0.076 0.924 12 C -0.155 4.155 13 C -0.113 4.113 14 C 0.064 3.936 15 N -0.679 5.679 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.621 6.621 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.996 3.004 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.039 3.961 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.246 0.754 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.346 0.654 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.214 -29.779 6.721 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.130 5.130 4 C -0.091 4.091 5 N -0.216 5.216 6 C -0.229 4.229 7 C 0.388 3.612 8 O -0.464 6.464 9 N -0.354 5.354 10 C 0.042 3.958 11 H 0.094 0.906 12 C -0.213 4.213 13 C -0.151 4.151 14 C -0.065 4.065 15 N -0.312 5.312 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.507 6.507 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.819 3.181 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.102 4.102 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.261 0.739 35 H 0.248 0.752 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.165 0.835 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.941 -29.123 6.218 31.394 hybrid contribution -1.321 0.293 0.588 1.475 sum 8.620 -28.829 6.806 30.850 Atomic orbital electron populations 1.22175 0.93721 1.04414 1.02425 1.22332 0.95798 0.77214 1.07261 1.45809 1.47131 1.14316 1.05730 1.25887 1.01544 0.86538 0.95170 1.70561 1.19688 1.21278 1.10111 1.20556 1.15091 0.96119 0.91143 1.17203 0.75784 0.82092 0.86148 1.90745 1.57367 1.83567 1.14716 1.45921 1.65939 1.12403 1.11148 1.20962 0.96588 0.84355 0.93876 0.90629 1.22096 0.94726 1.02399 1.02080 1.21774 0.95389 0.96553 1.01426 1.21985 0.97249 0.91721 0.95540 1.60076 1.13629 1.06087 1.51379 1.21521 0.91054 0.95189 0.99066 1.20805 0.83088 0.88895 0.84620 1.90481 1.38834 1.59968 1.61468 1.41937 1.07393 1.22307 1.49392 1.19661 0.94198 1.00539 1.32083 0.90175 1.26094 0.94110 1.02652 0.98590 1.69674 0.99055 1.40422 1.47048 0.84955 0.77552 0.77268 0.78345 1.19642 1.19449 1.19602 1.22776 1.01586 0.91452 0.94388 0.93265 0.92270 0.88276 0.85649 0.87193 0.73858 0.75227 0.89978 0.93513 0.91673 0.90161 0.89000 0.95071 0.91360 0.83519 0.88288 0.91908 0.77034 0.91262 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.24 71.98 0.74 0.21 16 2 C 0.09 0.19 6.84 86.38 0.59 0.78 16 3 N -0.45 -4.86 2.73 -528.37 -1.44 -6.30 16 4 C 0.19 2.57 12.55 180.10 2.26 4.84 16 5 N -0.50 -10.73 11.01 -188.82 -2.08 -12.81 16 6 C -0.10 -2.35 6.98 40.50 0.28 -2.06 16 7 C 0.60 16.04 7.78 86.63 0.67 16.72 16 8 O -0.58 -18.44 16.54 -4.10 -0.07 -18.51 16 9 N -0.70 -16.38 4.53 -445.88 -2.02 -18.40 16 10 C 0.15 3.14 2.57 44.99 0.12 3.25 16 11 H 0.08 1.83 7.58 -2.39 -0.02 1.82 16 12 C -0.15 -2.89 9.48 71.98 0.68 -2.21 16 13 C -0.11 -2.39 5.01 30.60 0.15 -2.24 16 14 C 0.06 1.66 5.57 86.31 0.48 2.14 16 15 N -0.68 -22.62 6.12 -517.91 -3.17 -25.80 16 16 C 0.06 2.36 6.17 85.56 0.53 2.89 16 17 C 0.44 21.70 7.82 87.66 0.69 22.39 16 18 O -0.62 -35.35 15.78 -3.05 -0.05 -35.40 16 19 N -0.57 -30.41 5.29 -307.00 -1.62 -32.04 16 20 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 21 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 24 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.04 0.67 11.26 83.72 0.94 1.61 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.25 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.41 9.29 8.32 -92.71 -0.77 8.51 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 1.83 7.75 -2.38 -0.02 1.81 16 43 H 0.35 11.77 8.43 -89.70 -0.76 11.02 16 44 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.40 20.01 7.90 -92.71 -0.73 19.28 16 47 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 48 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -79.34 410.77 0.01 -79.33 By element: Atomic # 1 Polarization: 46.67 SS G_CDS: -1.27 Total: 45.40 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 9.41 Total: 29.31 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -10.05 Total: -145.73 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.12 Total: -53.90 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -79.34 0.01 -79.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716187775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.537 kcal (2) G-P(sol) polarization free energy of solvation -79.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds