Wall clock time and date at job start Tue Mar 31 2020 20:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47010 * 2 1 4 4 C 1.46497 * 119.99811 * 275.84965 * 3 2 1 5 5 C 1.53001 * 109.47366 * 270.00259 * 4 3 2 6 6 N 1.46900 * 109.47396 * 180.02562 * 5 4 3 7 7 C 1.46895 * 110.99977 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46973 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00293 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00190 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00260 * 179.97438 * 10 8 7 12 12 H 1.07996 * 119.99847 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99718 * 179.97438 * 11 10 8 14 14 N 1.31421 * 119.99582 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00489 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47189 * 89.99930 * 15 13 11 17 17 H 1.48501 * 109.47279 * 210.00279 * 15 13 11 18 18 H 1.48510 * 109.47084 * 330.00287 * 15 13 11 19 19 C 1.34768 * 120.00104 * 95.84979 * 3 2 1 20 20 O 1.21604 * 120.00451 * 185.35938 * 19 3 2 21 21 C 1.47433 * 119.99754 * 5.36221 * 19 3 2 22 22 C 1.41287 * 126.41356 * 325.66224 * 21 19 3 23 23 N 1.30456 * 108.02218 * 179.72153 * 22 21 19 24 24 N 1.39934 * 108.89358 * 0.44726 * 23 22 21 25 25 C 1.46500 * 125.75219 * 179.81398 * 24 23 22 26 26 C 1.53005 * 109.46892 * 304.68902 * 25 24 23 27 27 C 1.34255 * 108.49389 * 359.54299 * 24 23 22 28 28 H 1.08997 * 109.47271 * 55.35824 * 1 2 3 29 29 H 1.09001 * 109.47193 * 175.35381 * 1 2 3 30 30 H 1.08996 * 109.47281 * 295.35506 * 1 2 3 31 31 H 1.09002 * 109.46713 * 240.00067 * 2 1 3 32 32 H 1.08994 * 109.47197 * 120.00040 * 2 1 3 33 33 H 1.09008 * 109.47131 * 30.00032 * 4 3 2 34 34 H 1.08995 * 109.47024 * 150.00079 * 4 3 2 35 35 H 1.09008 * 109.46811 * 299.99970 * 5 4 3 36 36 H 1.08995 * 109.47196 * 59.99925 * 5 4 3 37 37 H 1.00905 * 110.99592 * 56.04328 * 6 5 4 38 38 H 1.09004 * 109.47354 * 300.00100 * 7 6 5 39 39 H 1.08998 * 109.47012 * 60.00386 * 7 6 5 40 40 H 0.97006 * 119.99429 * 359.97438 * 10 8 7 41 41 H 0.97003 * 119.99473 * 180.02562 * 14 13 11 42 42 H 1.07996 * 125.99106 * 0.02562 * 22 21 19 43 43 H 1.09004 * 109.47370 * 184.69342 * 25 24 23 44 44 H 1.08996 * 109.47310 * 64.68444 * 25 24 23 45 45 H 1.09003 * 109.47193 * 180.02562 * 26 25 24 46 46 H 1.09006 * 109.46738 * 299.99789 * 26 25 24 47 47 H 1.08994 * 109.47259 * 60.00016 * 26 25 24 48 48 H 1.08000 * 126.29082 * 180.26350 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1406 2.1149 -1.2621 5 6 3.5360 1.8920 -1.8486 6 7 3.6588 2.6282 -3.1139 7 6 4.9891 2.4375 -3.7069 8 6 5.0775 3.2063 -5.0000 9 8 4.1257 3.8494 -5.3896 10 7 6.2138 3.1785 -5.7243 11 6 6.2940 3.8775 -6.9010 12 1 5.4466 4.4500 -7.2478 13 6 7.4658 3.8492 -7.6473 14 7 7.5428 4.5196 -8.7750 15 14 8.9319 2.8595 -7.0471 16 1 8.8497 1.4776 -7.5845 17 1 10.1869 3.4995 -7.5167 18 1 8.9245 2.8145 -5.5627 19 6 2.3551 1.9769 1.1610 20 8 2.6671 3.1522 1.1734 21 6 2.3453 1.2036 2.4162 22 6 1.4520 0.1620 2.7527 23 7 1.7689 -0.2735 3.9408 24 7 2.8575 0.4646 4.4186 25 6 3.5097 0.2846 5.7179 26 6 2.4677 0.4019 6.8322 27 6 3.2072 1.3617 3.4829 28 1 -0.3634 0.5841 -0.8455 29 1 -0.3634 -1.0243 -0.0832 30 1 -0.3633 0.4401 0.9286 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3892 1.7557 -1.9655 34 1 1.9886 3.1788 -1.0801 35 1 4.2873 2.2513 -1.1452 36 1 3.6879 0.8281 -2.0306 37 1 3.4587 3.6085 -2.9827 38 1 5.7503 2.8004 -3.0161 39 1 5.1513 1.3775 -3.9022 40 1 6.9749 2.6639 -5.4129 41 1 8.3607 4.4996 -9.2962 42 1 0.6506 -0.2118 2.1327 43 1 4.2722 1.0520 5.8513 44 1 3.9747 -0.7004 5.7577 45 1 2.9530 0.2684 7.7990 46 1 2.0027 1.3870 6.7924 47 1 1.7053 -0.3655 6.6989 48 1 4.0145 2.0758 3.5521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716209023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:41 Heat of formation + Delta-G solvation = 25.028460 kcal Electronic energy + Delta-G solvation = -28321.625036 eV Core-core repulsion = 24221.237890 eV Total energy + Delta-G solvation = -4100.387146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88480 -39.73120 -38.42810 -36.57431 -35.53022 -34.85641 -33.86038 -31.70875 -31.49202 -31.01149 -30.22028 -28.88924 -26.26678 -24.66355 -23.84908 -23.81650 -22.72418 -21.67030 -21.19926 -19.53243 -19.23927 -18.30457 -17.83239 -16.84977 -16.50041 -16.10708 -15.98573 -15.56158 -15.39770 -15.09445 -14.89716 -14.50286 -14.24206 -13.99643 -13.89901 -13.56990 -13.40247 -13.13226 -13.03788 -12.92073 -12.77870 -12.67266 -12.40090 -12.31281 -12.21012 -12.02194 -11.83241 -11.60812 -11.49999 -11.33399 -11.17793 -10.99894 -10.57387 -10.03513 -9.96939 -9.94858 -9.54399 -9.08271 -8.87582 -8.53731 -8.16719 -8.11429 -6.28386 -3.79596 1.21146 1.83547 1.88486 2.71094 3.04715 3.06175 3.08843 3.16767 3.77703 3.87561 4.12371 4.24868 4.30600 4.33523 4.40997 4.52015 4.59304 4.62125 4.83348 4.90539 4.93435 5.02644 5.05787 5.08546 5.17824 5.21240 5.25310 5.28532 5.41497 5.44565 5.51252 5.53121 5.65656 5.78723 5.85133 5.87261 5.93683 5.99876 6.00224 6.35935 6.38569 7.10507 7.11849 7.21987 7.59639 7.61709 8.05526 8.17639 8.62882 8.97943 9.45459 9.86068 10.84797 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.001843 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.301041 B =15192.428570 C =15999.995883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 N -0.605 5.605 4 C 0.118 3.882 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.451 3.549 9 O -0.563 6.563 10 N -0.591 5.591 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.594 3.406 20 O -0.542 6.542 21 C -0.290 4.290 22 C 0.067 3.933 23 N -0.295 5.295 24 N -0.361 5.361 25 C 0.125 3.875 26 C -0.166 4.166 27 C 0.121 3.879 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.353 0.647 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.199 0.801 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 -14.386 31.228 35.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.031 4.031 3 N -0.337 5.337 4 C -0.005 4.005 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.083 4.083 8 C 0.236 3.764 9 O -0.445 6.445 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.383 3.617 20 O -0.419 6.419 21 C -0.305 4.305 22 C -0.119 4.119 23 N -0.115 5.115 24 N -0.140 5.140 25 C 0.005 3.995 26 C -0.224 4.224 27 C -0.030 4.030 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.172 0.828 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.203 0.797 41 H 0.083 0.917 42 H 0.215 0.785 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.705 -14.608 31.477 36.033 hybrid contribution 2.136 0.277 0.214 2.164 sum -7.569 -14.332 31.691 35.595 Atomic orbital electron populations 1.22341 0.95783 1.02803 1.02898 1.21896 0.94484 0.82641 1.04088 1.47706 1.65365 1.14366 1.06295 1.21384 0.97262 0.98221 0.83597 1.22265 0.96547 0.99345 0.90249 1.60009 1.28243 1.17293 1.24389 1.21684 0.90140 1.01051 0.95416 1.19708 0.84036 0.86113 0.86496 1.90566 1.36949 1.45391 1.71610 1.42204 1.12877 1.45990 1.22023 1.19443 1.02042 1.26065 0.95767 0.86256 1.25037 0.97766 0.97563 0.95819 1.69630 1.28162 1.40959 1.13446 0.86667 0.83049 0.80800 0.78838 1.19615 1.20212 1.19547 1.17347 0.76238 0.85816 0.82329 1.90797 1.48899 1.15600 1.86597 1.20222 1.05033 1.06779 0.98425 1.24617 0.99471 0.94354 0.93496 1.77153 1.02851 1.18670 1.12870 1.48643 1.24694 1.26265 1.14418 1.21845 0.95158 1.04018 0.78492 1.22062 0.99475 1.03571 0.97278 1.22932 0.99002 0.93269 0.87777 0.91348 0.91010 0.92134 0.89987 0.89271 0.89246 0.89517 0.95211 0.91116 0.82779 0.93756 0.89513 0.79710 0.91654 0.78496 0.88192 0.89222 0.90394 0.91903 0.90915 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 9.33 37.16 0.35 -0.67 16 2 C 0.09 0.63 5.63 -4.04 -0.02 0.61 16 3 N -0.60 -6.08 2.47 -174.95 -0.43 -6.51 16 4 C 0.12 1.35 5.73 -4.04 -0.02 1.32 16 5 C 0.05 0.59 6.01 -3.82 -0.02 0.57 16 6 N -0.67 -10.70 6.13 -115.06 -0.70 -11.40 16 7 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 8 C 0.45 10.47 7.82 -10.98 -0.09 10.39 16 9 O -0.56 -15.42 15.78 5.55 0.09 -15.33 16 10 N -0.59 -14.36 5.09 -10.96 -0.06 -14.42 16 11 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 12 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 13 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 14 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 15 Si 0.88 19.60 27.73 -169.99 -4.71 14.88 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 19 C 0.59 7.14 7.59 -12.52 -0.10 7.04 16 20 O -0.54 -8.53 16.60 5.27 0.09 -8.44 16 21 C -0.29 -2.85 5.50 -105.06 -0.58 -3.42 16 22 C 0.07 0.57 9.46 -16.98 -0.16 0.41 16 23 N -0.30 -2.68 12.34 30.86 0.38 -2.30 16 24 N -0.36 -2.69 3.65 -60.81 -0.22 -2.91 16 25 C 0.13 0.48 7.21 -4.04 -0.03 0.45 16 26 C -0.17 -0.61 10.09 37.16 0.38 -0.24 16 27 C 0.12 1.00 11.39 -16.56 -0.19 0.81 16 28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 6.48 -51.93 -0.34 0.01 16 31 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.09 0.57 4.70 -51.93 -0.24 0.33 16 33 H 0.09 0.93 8.02 -51.92 -0.42 0.52 16 34 H 0.09 1.13 7.35 -51.93 -0.38 0.75 16 35 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.35 5.98 8.43 -39.29 -0.33 5.65 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.20 1.22 4.07 -52.49 -0.21 1.01 16 43 H 0.10 0.16 8.06 -51.93 -0.42 -0.26 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.19 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -37.17 398.20 -6.76 -43.94 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -7.20 Total: 11.49 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.76 Total: 10.24 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.26 Total: -62.79 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.18 Total: -23.77 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.17 -6.76 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716209023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.966 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds