Wall clock time and date at job start Tue Mar 31 2020 20:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47010 * 2 1 4 4 C 1.46497 * 119.99811 * 275.84965 * 3 2 1 5 5 C 1.53001 * 109.47366 * 270.00259 * 4 3 2 6 6 N 1.46900 * 109.47396 * 180.02562 * 5 4 3 7 7 C 1.46895 * 110.99977 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46973 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00293 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00190 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00260 * 179.97438 * 10 8 7 12 12 H 1.07996 * 119.99847 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99718 * 179.97438 * 11 10 8 14 14 N 1.31421 * 119.99582 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00489 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47189 * 89.99930 * 15 13 11 17 17 H 1.48501 * 109.47279 * 210.00279 * 15 13 11 18 18 H 1.48510 * 109.47084 * 330.00287 * 15 13 11 19 19 C 1.34768 * 120.00104 * 95.84979 * 3 2 1 20 20 O 1.21604 * 120.00451 * 185.35938 * 19 3 2 21 21 C 1.47433 * 119.99754 * 5.36221 * 19 3 2 22 22 C 1.41287 * 126.41356 * 325.66224 * 21 19 3 23 23 N 1.30456 * 108.02218 * 179.72153 * 22 21 19 24 24 N 1.39934 * 108.89358 * 0.44726 * 23 22 21 25 25 C 1.46500 * 125.75219 * 179.81398 * 24 23 22 26 26 C 1.53005 * 109.46892 * 304.68902 * 25 24 23 27 27 C 1.34255 * 108.49389 * 359.54299 * 24 23 22 28 28 H 1.08997 * 109.47271 * 55.35824 * 1 2 3 29 29 H 1.09001 * 109.47193 * 175.35381 * 1 2 3 30 30 H 1.08996 * 109.47281 * 295.35506 * 1 2 3 31 31 H 1.09002 * 109.46713 * 240.00067 * 2 1 3 32 32 H 1.08994 * 109.47197 * 120.00040 * 2 1 3 33 33 H 1.09008 * 109.47131 * 30.00032 * 4 3 2 34 34 H 1.08995 * 109.47024 * 150.00079 * 4 3 2 35 35 H 1.09008 * 109.46811 * 299.99970 * 5 4 3 36 36 H 1.08995 * 109.47196 * 59.99925 * 5 4 3 37 37 H 1.00905 * 110.99592 * 56.04328 * 6 5 4 38 38 H 1.09004 * 109.47354 * 300.00100 * 7 6 5 39 39 H 1.08998 * 109.47012 * 60.00386 * 7 6 5 40 40 H 0.97006 * 119.99429 * 359.97438 * 10 8 7 41 41 H 0.97003 * 119.99473 * 180.02562 * 14 13 11 42 42 H 1.07996 * 125.99106 * 0.02562 * 22 21 19 43 43 H 1.09004 * 109.47370 * 184.69342 * 25 24 23 44 44 H 1.08996 * 109.47310 * 64.68444 * 25 24 23 45 45 H 1.09003 * 109.47193 * 180.02562 * 26 25 24 46 46 H 1.09006 * 109.46738 * 299.99789 * 26 25 24 47 47 H 1.08994 * 109.47259 * 60.00016 * 26 25 24 48 48 H 1.08000 * 126.29082 * 180.26350 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1406 2.1149 -1.2621 5 6 3.5360 1.8920 -1.8486 6 7 3.6588 2.6282 -3.1139 7 6 4.9891 2.4375 -3.7069 8 6 5.0775 3.2063 -5.0000 9 8 4.1257 3.8494 -5.3896 10 7 6.2138 3.1785 -5.7243 11 6 6.2940 3.8775 -6.9010 12 1 5.4466 4.4500 -7.2478 13 6 7.4658 3.8492 -7.6473 14 7 7.5428 4.5196 -8.7750 15 14 8.9319 2.8595 -7.0471 16 1 8.8497 1.4776 -7.5845 17 1 10.1869 3.4995 -7.5167 18 1 8.9245 2.8145 -5.5627 19 6 2.3551 1.9769 1.1610 20 8 2.6671 3.1522 1.1734 21 6 2.3453 1.2036 2.4162 22 6 1.4520 0.1620 2.7527 23 7 1.7689 -0.2735 3.9408 24 7 2.8575 0.4646 4.4186 25 6 3.5097 0.2846 5.7179 26 6 2.4677 0.4019 6.8322 27 6 3.2072 1.3617 3.4829 28 1 -0.3634 0.5841 -0.8455 29 1 -0.3634 -1.0243 -0.0832 30 1 -0.3633 0.4401 0.9286 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3892 1.7557 -1.9655 34 1 1.9886 3.1788 -1.0801 35 1 4.2873 2.2513 -1.1452 36 1 3.6879 0.8281 -2.0306 37 1 3.4587 3.6085 -2.9827 38 1 5.7503 2.8004 -3.0161 39 1 5.1513 1.3775 -3.9022 40 1 6.9749 2.6639 -5.4129 41 1 8.3607 4.4996 -9.2962 42 1 0.6506 -0.2118 2.1327 43 1 4.2722 1.0520 5.8513 44 1 3.9747 -0.7004 5.7577 45 1 2.9530 0.2684 7.7990 46 1 2.0027 1.3870 6.7924 47 1 1.7053 -0.3655 6.6989 48 1 4.0145 2.0758 3.5521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716209023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:40 Heat of formation + Delta-G solvation = -4.223468 kcal Electronic energy + Delta-G solvation = -28322.893494 eV Core-core repulsion = 24221.237890 eV Total energy + Delta-G solvation = -4101.655605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.51126 -40.59876 -40.25410 -37.58598 -36.60961 -35.88936 -35.35113 -33.75409 -32.36015 -31.65026 -30.79414 -29.91810 -27.75769 -25.74100 -24.88534 -24.40770 -23.71457 -22.48163 -21.73703 -21.31028 -20.39678 -19.99359 -18.50983 -17.85617 -17.55759 -17.21762 -17.05576 -16.67251 -16.49703 -16.14265 -15.75234 -15.66751 -15.36968 -15.07639 -14.87814 -14.71347 -14.57845 -14.37424 -14.14733 -13.82726 -13.64555 -13.44834 -13.41835 -13.33497 -12.98214 -12.97018 -12.72617 -12.69984 -12.42784 -12.41256 -12.04940 -12.02154 -11.97711 -11.86537 -11.51431 -10.92270 -10.55761 -10.47564 -10.24955 -9.83221 -9.57997 -9.41183 -8.41171 -6.02292 0.56852 1.15816 1.30579 1.35946 1.39585 1.44859 1.89994 1.94716 2.23331 2.26903 2.77781 3.14739 3.37990 3.50678 3.76248 3.83737 3.99733 4.03812 4.07484 4.09854 4.14023 4.19080 4.34940 4.38738 4.41854 4.43299 4.50413 4.56822 4.58159 4.66260 4.79115 4.86471 4.88169 4.89649 4.99849 5.00902 5.20118 5.37408 5.44028 5.50866 5.57721 5.87816 5.87947 6.00281 6.28213 6.41234 6.53018 6.59304 6.87568 7.19144 7.38995 7.95428 8.76441 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.001843 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.301041 B =15192.428570 C =15999.995883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 N -0.599 5.599 4 C 0.123 3.877 5 C 0.057 3.943 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.448 3.552 9 O -0.613 6.613 10 N -0.590 5.590 11 C -0.331 4.331 12 H 0.055 0.945 13 C -0.015 4.015 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.233 1.233 19 C 0.591 3.409 20 O -0.590 6.590 21 C -0.314 4.314 22 C 0.073 3.927 23 N -0.317 5.317 24 N -0.356 5.356 25 C 0.115 3.885 26 C -0.161 4.161 27 C 0.124 3.876 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.090 0.910 37 H 0.343 0.657 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.215 0.785 43 H 0.127 0.873 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -17.595 34.007 38.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.033 4.033 3 N -0.330 5.330 4 C 0.000 4.000 5 C -0.073 4.073 6 N -0.312 5.312 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.232 5.232 11 C -0.460 4.460 12 H 0.073 0.927 13 C -0.213 4.213 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.156 1.156 19 C 0.382 3.618 20 O -0.471 6.471 21 C -0.329 4.329 22 C -0.113 4.113 23 N -0.137 5.137 24 N -0.135 5.135 25 C -0.003 4.003 26 C -0.219 4.219 27 C -0.029 4.029 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.109 0.891 37 H 0.162 0.838 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.145 0.855 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.973 -17.883 34.298 39.493 hybrid contribution 1.468 1.319 -0.628 2.071 sum -6.505 -16.565 33.670 38.083 Atomic orbital electron populations 1.22318 0.94755 1.04048 1.02362 1.22123 0.95284 0.80782 1.05075 1.47767 1.64629 1.15377 1.05262 1.21231 0.97075 0.97317 0.84421 1.22245 0.96842 0.99723 0.88463 1.60033 1.27777 1.17064 1.26320 1.21620 0.91534 1.01614 0.92108 1.20935 0.82671 0.84975 0.87792 1.90545 1.38663 1.47328 1.73215 1.42016 1.14159 1.46086 1.20904 1.19025 1.01071 1.27493 0.98394 0.92661 1.26126 1.01368 0.98466 0.95373 1.69813 1.29698 1.42709 1.15190 0.85353 0.76877 0.78795 0.80418 1.17946 1.19992 1.15619 1.17696 0.75434 0.85364 0.83342 1.90766 1.51356 1.17623 1.87358 1.20173 1.06681 1.07797 0.98232 1.24839 0.99414 0.93667 0.93417 1.77120 1.03836 1.19541 1.13180 1.48959 1.24027 1.25400 1.15119 1.22236 0.95519 1.05753 0.76835 1.22027 0.99190 1.02215 0.98474 1.23255 0.98953 0.93209 0.87437 0.92330 0.88751 0.92335 0.88779 0.88440 0.88201 0.91824 0.95827 0.89132 0.83840 0.91104 0.86310 0.77450 0.91122 0.76929 0.85547 0.88001 0.88091 0.93061 0.92590 0.78046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.33 71.98 0.67 -0.98 16 2 C 0.09 1.04 5.63 86.38 0.49 1.53 16 3 N -0.60 -11.42 2.47 -825.69 -2.04 -13.46 16 4 C 0.12 2.72 5.73 86.38 0.50 3.22 16 5 C 0.06 1.34 6.01 86.30 0.52 1.86 16 6 N -0.68 -20.98 6.13 -517.93 -3.17 -24.15 16 7 C 0.06 2.02 6.17 85.56 0.53 2.55 16 8 C 0.45 20.77 7.82 87.66 0.69 21.45 16 9 O -0.61 -34.80 15.78 -3.07 -0.05 -34.85 16 10 N -0.59 -28.34 5.09 -306.98 -1.56 -29.91 16 11 C -0.33 -19.69 10.16 84.04 0.85 -18.83 16 12 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 13 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 14 N -0.93 -56.78 13.96 21.66 0.30 -56.48 16 15 Si 0.97 39.08 27.73 68.60 1.90 40.99 16 16 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 19 C 0.59 14.01 7.59 86.67 0.66 14.66 16 20 O -0.59 -18.96 16.60 -4.04 -0.07 -19.03 16 21 C -0.31 -5.86 5.50 -20.15 -0.11 -5.97 16 22 C 0.07 1.13 9.46 85.65 0.81 1.94 16 23 N -0.32 -5.28 12.34 -56.28 -0.69 -5.98 16 24 N -0.36 -4.68 3.65 -346.29 -1.26 -5.95 16 25 C 0.12 0.62 7.21 86.38 0.62 1.24 16 26 C -0.16 -0.92 10.09 71.98 0.73 -0.19 16 27 C 0.12 1.87 11.39 84.28 0.96 2.83 16 28 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.58 6.48 -2.39 -0.02 0.56 16 31 H 0.09 0.90 8.11 -2.39 -0.02 0.88 16 32 H 0.10 1.02 4.70 -2.39 -0.01 1.01 16 33 H 0.10 1.99 8.02 -2.38 -0.02 1.97 16 34 H 0.06 1.72 7.35 -2.39 -0.02 1.70 16 35 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.34 11.73 8.43 -89.69 -0.76 10.97 16 38 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.39 15.46 5.76 -92.70 -0.53 14.93 16 41 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.21 2.28 4.07 -2.91 -0.01 2.26 16 43 H 0.13 0.01 8.06 -2.38 -0.02 -0.01 16 44 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.10 0.10 8.14 -2.39 -0.02 0.09 16 46 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 47 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -87.13 398.20 1.38 -85.76 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.35 Total: 38.11 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 8.37 Total: 24.94 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -8.43 Total: -135.92 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.12 Total: -53.88 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.90 Total: 40.99 kcal Total: -87.13 1.38 -85.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716209023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.533 kcal (2) G-P(sol) polarization free energy of solvation -87.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds