Wall clock time and date at job start Tue Mar 31 2020 20:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 N 1.46504 * 109.47223 * 240.00113 * 2 1 3 5 5 N 1.28436 * 125.18940 * 54.50418 * 4 2 1 6 6 C 1.30870 * 110.92518 * 179.82137 * 5 4 2 7 7 C 1.39668 * 107.85900 * 0.43968 * 6 5 4 8 8 C 1.36600 * 125.18938 * 234.81460 * 4 2 1 9 9 C 1.47160 * 126.88317 * 359.97438 * 8 4 2 10 10 O 1.21633 * 120.00374 * 5.36123 * 9 8 4 11 11 N 1.34781 * 120.00050 * 185.37024 * 9 8 4 12 12 C 1.46503 * 119.99773 * 185.07014 * 11 9 8 13 13 H 1.08990 * 109.47138 * 35.00060 * 12 11 9 14 14 C 1.52995 * 109.46873 * 274.99458 * 12 11 9 15 15 C 1.53001 * 109.46583 * 155.00151 * 12 11 9 16 16 N 1.46900 * 109.46907 * 304.99507 * 15 12 11 17 17 C 1.46904 * 110.99780 * 180.02562 * 16 15 12 18 18 C 1.50707 * 109.47081 * 179.97438 * 17 16 15 19 19 O 1.21291 * 119.99680 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99948 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99843 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99609 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99347 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00246 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47142 * 90.00006 * 25 23 21 27 27 H 1.48497 * 109.47093 * 209.99591 * 25 23 21 28 28 H 1.48500 * 109.47350 * 329.99865 * 25 23 21 29 29 H 1.08997 * 109.47156 * 60.00363 * 1 2 3 30 30 H 1.08999 * 109.46831 * 299.99909 * 1 2 3 31 31 H 1.08998 * 109.46846 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47156 * 119.99637 * 2 1 3 33 33 H 1.09005 * 109.47106 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46882 * 299.99849 * 3 2 1 35 35 H 1.08996 * 109.47502 * 59.99881 * 3 2 1 36 36 H 1.07997 * 126.06805 * 180.15045 * 6 5 4 37 37 H 1.08002 * 127.31958 * 179.70870 * 7 6 5 38 38 H 0.96993 * 119.99588 * 5.07028 * 11 9 8 39 39 H 1.09004 * 109.47851 * 300.00028 * 14 12 11 40 40 H 1.09004 * 109.47066 * 60.00875 * 14 12 11 41 41 H 1.09004 * 109.46872 * 180.02562 * 14 12 11 42 42 H 1.08995 * 109.47570 * 64.99643 * 15 12 11 43 43 H 1.08995 * 109.46897 * 184.99911 * 15 12 11 44 44 H 1.00905 * 111.00183 * 56.05479 * 16 15 12 45 45 H 1.08994 * 109.47334 * 300.00165 * 17 16 15 46 46 H 1.08996 * 109.46919 * 60.00269 * 17 16 15 47 47 H 0.97003 * 120.00080 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99618 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.6905 -0.4010 -2.4038 6 6 2.2928 -1.1926 -3.2543 7 6 3.0793 -2.0866 -2.5243 8 6 2.8873 -1.7446 -1.1971 9 6 3.4973 -2.3873 -0.0222 10 8 3.1659 -2.0475 1.0977 11 7 4.4236 -3.3525 -0.1870 12 6 4.9495 -4.0694 0.9774 13 1 4.1584 -4.1906 1.7172 14 6 6.1026 -3.2715 1.5894 15 6 5.4563 -5.4460 0.5424 16 7 4.3811 -6.1664 -0.1526 17 6 4.8323 -7.4958 -0.5853 18 6 3.7050 -8.2035 -1.2920 19 8 2.6315 -7.6542 -1.4228 20 7 3.8897 -9.4466 -1.7787 21 6 2.8643 -10.0902 -2.4221 22 1 1.9084 -9.6012 -2.5386 23 6 3.0549 -11.3717 -2.9243 24 7 2.0719 -11.9888 -3.5406 25 14 4.7084 -12.2172 -2.7235 26 1 4.7217 -12.9824 -1.4509 27 1 4.9312 -13.1452 -3.8612 28 1 5.7866 -11.1964 -2.6987 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.1949 -1.1631 -4.3294 37 1 3.7041 -2.8772 -2.9130 38 1 4.7418 -3.5723 -1.0764 39 1 6.8938 -3.1504 0.8495 40 1 5.7415 -2.2908 1.8993 41 1 6.4942 -3.8052 2.4555 42 1 6.3058 -5.3248 -0.1296 43 1 5.7654 -6.0133 1.4202 44 1 4.0327 -5.6306 -0.9334 45 1 5.6777 -7.3892 -1.2649 46 1 5.1369 -8.0771 0.2850 47 1 4.7483 -9.8857 -1.6744 48 1 2.2050 -12.8832 -3.8915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716397090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:19 Heat of formation + Delta-G solvation = 8.987894 kcal Electronic energy + Delta-G solvation = -29137.958276 eV Core-core repulsion = 25036.875559 eV Total energy + Delta-G solvation = -4101.082717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70581 -39.83073 -38.51293 -36.91418 -35.91776 -34.38420 -33.76133 -32.04134 -31.66515 -30.51345 -30.15404 -27.82345 -27.61083 -25.15596 -24.15607 -23.18600 -22.99683 -21.70754 -20.68449 -19.91530 -19.38912 -18.46741 -18.04060 -16.68475 -16.27297 -16.15033 -15.86540 -15.51232 -15.03035 -15.02462 -14.84013 -14.65037 -14.26142 -14.15559 -14.03724 -13.27772 -13.26555 -13.23436 -13.20935 -12.79881 -12.64426 -12.55018 -12.42958 -12.31180 -11.99266 -11.91825 -11.73954 -11.68183 -11.49783 -11.21174 -11.11858 -10.91032 -10.61887 -10.07356 -9.99559 -9.59584 -9.48840 -9.24560 -9.13205 -8.63686 -8.25063 -8.19247 -6.32868 -3.84487 1.11608 2.17023 2.50910 2.95982 2.99817 3.04971 3.07976 3.13234 3.70598 3.93900 4.08298 4.24911 4.37428 4.59638 4.67645 4.72084 4.75657 4.92674 4.98196 4.99440 5.09051 5.19771 5.22250 5.28989 5.30886 5.40040 5.42302 5.44570 5.47525 5.56130 5.57098 5.59436 5.73574 5.78716 5.82952 5.88269 5.89504 5.97691 6.22697 6.37843 6.62987 6.96272 7.16988 7.44723 7.55859 7.87482 7.98349 8.12421 8.57447 8.93043 9.40168 9.80050 10.80224 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002402 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.186954 B =11655.872059 C =12833.408720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 C -0.158 4.158 4 N -0.248 5.248 5 N -0.274 5.274 6 C -0.005 4.005 7 C -0.184 4.184 8 C -0.042 4.042 9 C 0.600 3.400 10 O -0.541 6.541 11 N -0.706 5.706 12 C 0.147 3.853 13 H 0.100 0.900 14 C -0.162 4.162 15 C 0.050 3.950 16 N -0.667 5.667 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.881 3.119 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.160 0.840 38 H 0.401 0.599 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.090 0.910 44 H 0.349 0.651 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 22.768 6.967 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.216 4.216 4 N -0.037 5.037 5 N -0.107 5.107 6 C -0.181 4.181 7 C -0.213 4.213 8 C -0.170 4.170 9 C 0.386 3.614 10 O -0.419 6.419 11 N -0.358 5.358 12 C 0.043 3.957 13 H 0.118 0.882 14 C -0.221 4.221 15 C -0.080 4.080 16 N -0.301 5.301 17 C -0.085 4.085 18 C 0.234 3.766 19 O -0.445 6.445 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.203 0.797 37 H 0.177 0.823 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.170 0.830 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.367 23.902 8.358 26.371 hybrid contribution 2.554 -1.597 -1.363 3.306 sum 9.921 22.304 6.996 25.394 Atomic orbital electron populations 1.22097 0.92652 1.03431 1.03479 1.22114 0.96278 0.94277 0.84722 1.22123 1.01759 0.94213 1.03499 1.45975 1.30127 1.21986 1.05625 1.73118 1.22485 1.25196 0.89867 1.23570 0.98913 0.95579 1.00007 1.22279 1.05062 1.03198 0.90766 1.21354 1.02824 0.97176 0.95650 1.16839 0.78624 0.79226 0.86693 1.90708 1.62660 1.63370 1.25158 1.45677 1.41698 1.37376 1.11014 1.21108 0.97025 0.89659 0.87911 0.88153 1.22158 0.97765 1.01101 1.01063 1.22326 0.92643 0.93211 0.99850 1.60003 1.33647 1.03159 1.33273 1.21729 0.96050 0.91315 0.99442 1.19692 0.89607 0.82960 0.84377 1.90582 1.26948 1.66153 1.60782 1.42203 1.13612 1.14657 1.52472 1.19432 0.94365 0.98131 1.31467 0.86283 1.25049 0.97717 0.96424 0.97014 1.69625 1.31344 1.14048 1.37023 0.86660 0.83464 0.80217 0.78953 1.19596 1.20189 1.19554 0.91068 0.90326 0.91739 0.84628 0.92140 0.91280 0.90246 0.79713 0.82261 0.76394 0.92440 0.91698 0.91192 0.94762 0.89172 0.83047 0.93667 0.89291 0.79704 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.30 37.16 0.35 -1.12 16 2 C 0.13 1.31 3.56 -67.93 -0.24 1.07 16 3 C -0.16 -1.31 9.45 37.16 0.35 -0.95 16 4 N -0.25 -3.06 3.09 -50.69 -0.16 -3.22 16 5 N -0.27 -3.42 11.52 30.59 0.35 -3.07 16 6 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 7 C -0.18 -2.00 10.50 -38.99 -0.41 -2.41 16 8 C -0.04 -0.52 6.96 -82.06 -0.57 -1.09 16 9 C 0.60 7.57 7.75 -12.64 -0.10 7.47 16 10 O -0.54 -7.90 14.06 5.25 0.07 -7.83 16 11 N -0.71 -7.24 4.33 -54.97 -0.24 -7.48 16 12 C 0.15 1.47 2.84 -67.93 -0.19 1.27 16 13 H 0.10 1.24 7.65 -51.93 -0.40 0.84 16 14 C -0.16 -1.30 9.48 37.16 0.35 -0.94 16 15 C 0.05 0.49 5.30 -3.82 -0.02 0.47 16 16 N -0.67 -9.54 6.12 -115.06 -0.70 -10.25 16 17 C 0.05 0.73 6.17 -4.97 -0.03 0.70 16 18 C 0.45 9.91 7.82 -10.98 -0.09 9.83 16 19 O -0.56 -14.95 15.78 5.55 0.09 -14.86 16 20 N -0.59 -13.77 5.09 -10.96 -0.06 -13.83 16 21 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 25 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.27 -5.27 6.52 56.52 0.37 -4.91 16 29 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.57 5.32 -51.93 -0.28 1.30 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.16 1.34 7.62 -52.49 -0.40 0.94 16 38 H 0.40 3.39 7.23 -40.82 -0.30 3.09 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.35 5.18 7.28 -39.29 -0.29 4.89 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -35.30 399.60 -6.98 -42.28 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -7.36 Total: 16.36 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.06 Total: 6.33 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.03 Total: -62.65 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.16 Total: -22.69 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.30 -6.98 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716397090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.266 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds