Wall clock time and date at job start Tue Mar 31 2020 20:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 N 1.46504 * 109.47223 * 240.00113 * 2 1 3 5 5 N 1.28436 * 125.18940 * 54.50418 * 4 2 1 6 6 C 1.30870 * 110.92518 * 179.82137 * 5 4 2 7 7 C 1.39668 * 107.85900 * 0.43968 * 6 5 4 8 8 C 1.36600 * 125.18938 * 234.81460 * 4 2 1 9 9 C 1.47160 * 126.88317 * 359.97438 * 8 4 2 10 10 O 1.21633 * 120.00374 * 5.36123 * 9 8 4 11 11 N 1.34781 * 120.00050 * 185.37024 * 9 8 4 12 12 C 1.46503 * 119.99773 * 185.07014 * 11 9 8 13 13 H 1.08990 * 109.47138 * 35.00060 * 12 11 9 14 14 C 1.52995 * 109.46873 * 274.99458 * 12 11 9 15 15 C 1.53001 * 109.46583 * 155.00151 * 12 11 9 16 16 N 1.46900 * 109.46907 * 304.99507 * 15 12 11 17 17 C 1.46904 * 110.99780 * 180.02562 * 16 15 12 18 18 C 1.50707 * 109.47081 * 179.97438 * 17 16 15 19 19 O 1.21291 * 119.99680 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99948 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99843 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99609 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99347 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00246 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47142 * 90.00006 * 25 23 21 27 27 H 1.48497 * 109.47093 * 209.99591 * 25 23 21 28 28 H 1.48500 * 109.47350 * 329.99865 * 25 23 21 29 29 H 1.08997 * 109.47156 * 60.00363 * 1 2 3 30 30 H 1.08999 * 109.46831 * 299.99909 * 1 2 3 31 31 H 1.08998 * 109.46846 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47156 * 119.99637 * 2 1 3 33 33 H 1.09005 * 109.47106 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46882 * 299.99849 * 3 2 1 35 35 H 1.08996 * 109.47502 * 59.99881 * 3 2 1 36 36 H 1.07997 * 126.06805 * 180.15045 * 6 5 4 37 37 H 1.08002 * 127.31958 * 179.70870 * 7 6 5 38 38 H 0.96993 * 119.99588 * 5.07028 * 11 9 8 39 39 H 1.09004 * 109.47851 * 300.00028 * 14 12 11 40 40 H 1.09004 * 109.47066 * 60.00875 * 14 12 11 41 41 H 1.09004 * 109.46872 * 180.02562 * 14 12 11 42 42 H 1.08995 * 109.47570 * 64.99643 * 15 12 11 43 43 H 1.08995 * 109.46897 * 184.99911 * 15 12 11 44 44 H 1.00905 * 111.00183 * 56.05479 * 16 15 12 45 45 H 1.08994 * 109.47334 * 300.00165 * 17 16 15 46 46 H 1.08996 * 109.46919 * 60.00269 * 17 16 15 47 47 H 0.97003 * 120.00080 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99618 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.6905 -0.4010 -2.4038 6 6 2.2928 -1.1926 -3.2543 7 6 3.0793 -2.0866 -2.5243 8 6 2.8873 -1.7446 -1.1971 9 6 3.4973 -2.3873 -0.0222 10 8 3.1659 -2.0475 1.0977 11 7 4.4236 -3.3525 -0.1870 12 6 4.9495 -4.0694 0.9774 13 1 4.1584 -4.1906 1.7172 14 6 6.1026 -3.2715 1.5894 15 6 5.4563 -5.4460 0.5424 16 7 4.3811 -6.1664 -0.1526 17 6 4.8323 -7.4958 -0.5853 18 6 3.7050 -8.2035 -1.2920 19 8 2.6315 -7.6542 -1.4228 20 7 3.8897 -9.4466 -1.7787 21 6 2.8643 -10.0902 -2.4221 22 1 1.9084 -9.6012 -2.5386 23 6 3.0549 -11.3717 -2.9243 24 7 2.0719 -11.9888 -3.5406 25 14 4.7084 -12.2172 -2.7235 26 1 4.7217 -12.9824 -1.4509 27 1 4.9312 -13.1452 -3.8612 28 1 5.7866 -11.1964 -2.6987 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.1949 -1.1631 -4.3294 37 1 3.7041 -2.8772 -2.9130 38 1 4.7418 -3.5723 -1.0764 39 1 6.8938 -3.1504 0.8495 40 1 5.7415 -2.2908 1.8993 41 1 6.4942 -3.8052 2.4555 42 1 6.3058 -5.3248 -0.1296 43 1 5.7654 -6.0133 1.4202 44 1 4.0327 -5.6306 -0.9334 45 1 5.6777 -7.3892 -1.2649 46 1 5.1369 -8.0771 0.2850 47 1 4.7483 -9.8857 -1.6744 48 1 2.2050 -12.8832 -3.8915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716397090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:18 Heat of formation + Delta-G solvation = -19.479259 kcal Electronic energy + Delta-G solvation = -29139.192705 eV Core-core repulsion = 25036.875559 eV Total energy + Delta-G solvation = -4102.317146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.58010 -40.77919 -40.22408 -37.93454 -36.73252 -36.04831 -35.13096 -33.73036 -32.92272 -31.34798 -31.01292 -29.08906 -28.32648 -26.64072 -25.16028 -24.40052 -23.85210 -22.54723 -21.55308 -21.28956 -20.76686 -20.22186 -19.02389 -17.77705 -17.59033 -17.06659 -16.97235 -16.77496 -16.49637 -15.96028 -15.81987 -15.63262 -15.53957 -15.33630 -14.94715 -14.92045 -14.45913 -14.19650 -14.08118 -14.04631 -14.00540 -13.40983 -13.20391 -13.16014 -13.13038 -13.02950 -12.80425 -12.71199 -12.45619 -12.39602 -12.29639 -11.98348 -11.92699 -11.81514 -11.49861 -11.01831 -10.46887 -10.37276 -10.23533 -10.09761 -9.99198 -9.30619 -8.39979 -6.01123 0.20183 1.31257 1.34075 1.37731 1.46401 1.64194 1.98096 2.08684 2.18492 2.24735 2.72405 3.16615 3.36285 3.45535 3.54816 3.84084 3.86936 3.95227 4.12431 4.15210 4.15824 4.22144 4.35223 4.47361 4.54516 4.57564 4.58882 4.59681 4.68925 4.70671 4.75733 4.79569 4.82480 4.84004 5.05008 5.09512 5.12733 5.30370 5.42411 5.53869 5.56212 5.77969 5.90691 6.04311 6.32051 6.37218 6.61183 6.89949 6.99226 7.09244 7.41648 7.99084 8.77820 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002402 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.186954 B =11655.872059 C =12833.408720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 C -0.149 4.149 4 N -0.257 5.257 5 N -0.292 5.292 6 C -0.013 4.013 7 C -0.182 4.182 8 C -0.065 4.065 9 C 0.595 3.405 10 O -0.569 6.569 11 N -0.695 5.695 12 C 0.148 3.852 13 H 0.071 0.929 14 C -0.153 4.153 15 C 0.056 3.944 16 N -0.693 5.693 17 C 0.063 3.937 18 C 0.446 3.554 19 O -0.616 6.616 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.052 0.948 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.227 1.227 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.122 0.878 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.212 0.788 37 H 0.183 0.817 38 H 0.411 0.589 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.343 0.657 45 H 0.085 0.915 46 H 0.117 0.883 47 H 0.391 0.609 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.720 22.769 7.596 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.018 3.982 3 C -0.206 4.206 4 N -0.046 5.046 5 N -0.125 5.125 6 C -0.188 4.188 7 C -0.211 4.211 8 C -0.193 4.193 9 C 0.381 3.619 10 O -0.450 6.450 11 N -0.347 5.347 12 C 0.044 3.956 13 H 0.089 0.911 14 C -0.211 4.211 15 C -0.072 4.072 16 N -0.326 5.326 17 C -0.070 4.070 18 C 0.234 3.766 19 O -0.501 6.501 20 N -0.232 5.232 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.787 3.213 26 H -0.183 1.183 27 H -0.202 1.202 28 H -0.150 1.150 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.229 0.771 37 H 0.200 0.800 38 H 0.248 0.752 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.162 0.838 45 H 0.103 0.897 46 H 0.135 0.865 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.611 23.917 9.000 28.069 hybrid contribution 1.112 -1.524 -1.557 2.447 sum 12.724 22.393 7.442 26.809 Atomic orbital electron populations 1.22067 0.91972 1.02379 1.04607 1.22245 0.96860 0.95205 0.83859 1.22071 1.01212 0.92850 1.04511 1.46199 1.30241 1.22192 1.05944 1.73090 1.23169 1.26027 0.90213 1.24122 0.98364 0.95093 1.01203 1.22633 1.04916 1.03417 0.90120 1.21594 1.03599 0.97823 0.96286 1.16988 0.78899 0.79585 0.86399 1.90688 1.63715 1.64448 1.26109 1.45642 1.40831 1.36393 1.11822 1.21127 0.96883 0.90423 0.87202 0.91087 1.22073 0.97130 0.99897 1.02017 1.22396 0.92036 0.92256 1.00542 1.59975 1.36105 1.03205 1.33362 1.21657 0.93552 0.91319 1.00428 1.21103 0.90669 0.82232 0.82602 1.90564 1.29959 1.67300 1.62258 1.42024 1.13305 1.15253 1.52662 1.18989 0.93767 0.99150 1.33848 0.92943 1.26165 1.03261 0.96575 0.95615 1.69818 1.34769 1.14807 1.38292 0.85334 0.77520 0.79341 0.79115 1.18310 1.20192 1.14979 0.91264 0.87811 0.93795 0.86044 0.92850 0.91507 0.87888 0.77111 0.79992 0.75217 0.90719 0.93500 0.89486 0.91684 0.87551 0.83804 0.89723 0.86489 0.77374 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.30 71.98 0.67 -2.23 16 2 C 0.12 2.54 3.56 44.99 0.16 2.70 16 3 C -0.15 -2.43 9.45 71.98 0.68 -1.75 16 4 N -0.26 -6.49 3.09 -314.29 -0.97 -7.47 16 5 N -0.29 -7.36 11.52 -57.14 -0.66 -8.02 16 6 C -0.01 -0.28 12.03 85.18 1.02 0.75 16 7 C -0.18 -3.87 10.50 22.65 0.24 -3.63 16 8 C -0.06 -1.64 6.96 40.78 0.28 -1.35 16 9 C 0.60 15.27 7.75 86.59 0.67 15.94 16 10 O -0.57 -17.33 14.06 -4.14 -0.06 -17.39 16 11 N -0.70 -13.60 4.33 -446.06 -1.93 -15.53 16 12 C 0.15 2.69 2.84 44.99 0.13 2.82 16 13 H 0.07 1.74 7.65 -2.39 -0.02 1.72 16 14 C -0.15 -2.08 9.48 71.98 0.68 -1.39 16 15 C 0.06 0.90 5.30 86.30 0.46 1.36 16 16 N -0.69 -18.08 6.12 -517.93 -3.17 -21.25 16 17 C 0.06 1.69 6.17 85.56 0.53 2.22 16 18 C 0.45 19.35 7.82 87.66 0.69 20.04 16 19 O -0.62 -33.76 15.78 -3.06 -0.05 -33.81 16 20 N -0.59 -26.98 5.09 -306.98 -1.56 -28.54 16 21 C -0.33 -19.05 10.16 84.04 0.85 -18.19 16 22 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 23 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 24 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16 25 Si 0.97 37.87 27.74 68.60 1.90 39.77 16 26 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 27 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 29 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.12 2.99 5.32 -2.39 -0.01 2.97 16 33 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.18 2.80 7.62 -2.91 -0.02 2.77 16 38 H 0.41 6.23 7.23 -92.71 -0.67 5.56 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 0.83 8.09 -2.38 -0.02 0.81 16 41 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.34 9.64 7.28 -89.69 -0.65 8.99 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 47 H 0.39 14.47 5.76 -92.71 -0.53 13.93 16 48 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -84.78 399.60 0.42 -84.36 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: -0.92 Total: 47.14 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 7.53 Total: 16.76 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -7.99 Total: -136.83 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.11 Total: -51.20 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.90 Total: 39.77 kcal Total: -84.78 0.42 -84.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716397090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.878 kcal (2) G-P(sol) polarization free energy of solvation -84.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds