Wall clock time and date at job start Tue Mar 31 2020 19:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 N 1.46906 * 109.47473 * 185.00050 * 4 2 1 6 6 C 1.46896 * 111.00220 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46825 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00235 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00402 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99728 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47203 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47395 * 120.00528 * 14 12 10 17 17 H 1.48509 * 109.47081 * 240.00211 * 14 12 10 18 18 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 19 19 C 1.34784 * 119.99971 * 275.00026 * 18 2 1 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 18 2 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 18 2 22 22 C 1.53002 * 109.47004 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.47066 * 55.00116 * 22 21 19 24 24 C 1.52999 * 109.47325 * 295.00504 * 22 21 19 25 25 N 1.46498 * 109.47242 * 174.99767 * 22 21 19 26 26 C 1.34946 * 126.03338 * 84.72113 * 25 22 21 27 27 C 1.35317 * 107.74448 * 179.83941 * 26 25 22 28 28 C 1.39864 * 107.92118 * 0.41891 * 27 26 25 29 29 N 1.30838 * 108.19949 * 359.74191 * 28 27 26 30 30 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 31 31 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 32 32 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47135 * 304.99852 * 4 2 1 34 34 H 1.09000 * 109.47629 * 64.99939 * 4 2 1 35 35 H 1.00902 * 110.99780 * 56.03718 * 5 4 2 36 36 H 1.09004 * 109.47058 * 299.99591 * 6 5 4 37 37 H 1.08997 * 109.47016 * 60.00038 * 6 5 4 38 38 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 39 39 H 0.97003 * 120.00174 * 179.97438 * 13 12 10 40 40 H 0.96999 * 119.99984 * 94.99874 * 18 2 1 41 41 H 1.09005 * 109.47403 * 300.00056 * 21 19 18 42 42 H 1.09002 * 109.47422 * 60.00295 * 21 19 18 43 43 H 1.09006 * 109.46731 * 299.99817 * 24 22 21 44 44 H 1.08997 * 109.47332 * 59.99039 * 24 22 21 45 45 H 1.08996 * 109.47531 * 180.02562 * 24 22 21 46 46 H 1.08006 * 126.12808 * 359.97438 * 26 25 22 47 47 H 1.08000 * 126.04089 * 180.16396 * 27 26 25 48 48 H 1.08002 * 125.90111 * 179.72034 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2807 8 8 6.1068 -1.1385 -1.3197 9 7 6.2353 -2.2009 -3.2633 10 6 7.6012 -2.2809 -3.1767 11 1 8.1133 -1.8662 -2.3210 12 6 8.3266 -2.8964 -4.1894 13 7 7.7035 -3.4015 -5.2304 14 14 10.1877 -3.0061 -4.0711 15 1 10.6421 -2.3659 -2.8107 16 1 10.6011 -4.4323 -4.0796 17 1 10.7994 -2.3065 -5.2295 18 7 2.0184 -0.6906 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8633 1.1597 2.4104 21 6 2.6489 -0.7287 3.5877 22 6 2.7012 0.2545 4.7588 23 1 1.7216 0.7141 4.8913 24 6 3.7386 1.3406 4.4670 25 7 3.0741 -0.4614 5.9813 26 6 4.3307 -0.7433 6.3841 27 6 4.2475 -1.4093 7.5591 28 6 2.8934 -1.5472 7.8807 29 7 2.1890 -0.9793 6.9356 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7197 -1.2951 34 1 1.7516 -0.1582 -2.1369 35 1 3.7996 -1.2883 -0.3433 36 1 3.6094 -2.5199 -2.4295 37 1 3.7557 -0.9587 -3.2719 38 1 5.7754 -2.5730 -4.0320 39 1 8.2100 -3.8308 -5.9375 40 1 2.2491 -1.6317 1.1526 41 1 1.9760 -1.5506 3.8326 42 1 3.6481 -1.1213 3.3986 43 1 4.7181 0.8810 4.3345 44 1 3.4612 1.8731 3.5574 45 1 3.7762 2.0408 5.3014 46 1 5.2401 -0.4822 5.8632 47 1 5.0796 -1.7739 8.1432 48 1 2.4975 -2.0379 8.7576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716418827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:40 Heat of formation + Delta-G solvation = 3.112909 kcal Electronic energy + Delta-G solvation = -28541.663967 eV Core-core repulsion = 24440.326492 eV Total energy + Delta-G solvation = -4101.337476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44137 -40.16667 -38.40292 -37.06883 -35.47874 -34.33610 -33.71208 -31.63683 -31.24397 -30.41074 -29.90473 -28.05460 -27.67087 -25.09836 -23.86940 -23.29633 -21.64621 -21.25406 -20.66083 -20.00043 -19.31062 -18.00858 -17.86130 -16.95920 -16.49660 -16.07594 -15.93593 -15.45620 -15.07226 -14.86168 -14.65822 -14.50903 -14.09765 -13.96233 -13.91493 -13.55491 -13.49164 -13.15138 -13.11622 -12.91189 -12.69180 -12.54826 -12.20180 -11.97770 -11.82216 -11.69195 -11.66432 -11.51139 -11.49045 -11.13788 -11.04824 -10.87446 -10.38354 -10.27467 -10.06124 -9.62341 -9.57220 -9.28394 -8.81101 -8.54308 -8.16722 -8.01714 -6.46866 -3.87861 1.69380 2.17495 2.42338 2.66705 3.03051 3.12586 3.23673 3.30622 3.84092 3.98225 4.17475 4.22368 4.33634 4.52075 4.66565 4.75418 4.76285 4.90472 4.93375 5.08359 5.11191 5.15476 5.18989 5.21493 5.35897 5.40488 5.48071 5.50939 5.51601 5.55682 5.68285 5.69940 5.82612 5.85086 5.89637 5.95151 6.01996 6.19315 6.31959 6.45417 6.82526 7.06514 7.24184 7.50470 7.51295 7.52374 7.99532 8.00894 8.55346 9.12636 9.48452 9.99432 10.70804 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.002275 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.330416 B =12303.199658 C =14425.504352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.099 0.901 4 C 0.050 3.950 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.720 5.720 19 C 0.527 3.473 20 O -0.537 6.537 21 C -0.158 4.158 22 C 0.178 3.822 23 H 0.110 0.890 24 C -0.170 4.170 25 N -0.366 5.366 26 C 0.058 3.942 27 C -0.278 4.278 28 C 0.042 3.958 29 N -0.300 5.300 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.347 0.653 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.399 0.601 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.173 0.827 47 H 0.146 0.854 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 2.324 16.442 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.199 5.199 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.542 5.542 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.371 5.371 19 C 0.313 3.687 20 O -0.414 6.414 21 C -0.199 4.199 22 C 0.076 3.924 23 H 0.128 0.872 24 C -0.228 4.228 25 N -0.149 5.149 26 C -0.088 4.088 27 C -0.308 4.308 28 C -0.144 4.144 29 N -0.121 5.121 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.083 0.917 46 H 0.190 0.810 47 H 0.164 0.836 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.485 4.383 16.147 22.130 hybrid contribution 1.409 -2.139 -0.180 2.568 sum -13.075 2.243 15.966 20.759 Atomic orbital electron populations 1.22152 0.94960 1.02112 1.02832 1.21063 0.93449 0.98523 0.82983 0.88257 1.22314 0.88852 0.99022 0.97849 1.60026 1.07462 1.57503 1.04957 1.21696 0.95191 0.96954 0.94455 1.19787 0.88043 0.84348 0.85358 1.90524 1.71107 1.51549 1.33592 1.41875 1.07455 1.50719 1.19890 1.19747 0.81465 1.35015 1.06652 0.87865 1.25275 1.00757 0.96731 0.95204 1.69618 1.36661 1.38507 1.09445 0.85799 0.82156 0.77901 0.78485 1.19195 1.20741 1.20698 1.46003 1.67331 1.14004 1.09797 1.20128 0.77200 0.87147 0.84208 1.90686 1.50128 1.15581 1.84988 1.22106 1.04672 0.99970 0.93115 1.20922 1.01970 0.90635 0.78882 0.87223 1.22344 0.97852 0.97884 1.04691 1.48960 1.03935 1.43771 1.18240 1.22584 0.89867 0.99307 0.97058 1.21524 0.97509 1.11759 0.99981 1.23882 0.92684 0.99402 0.98473 1.77358 1.17224 1.16908 1.00634 0.91870 0.91299 0.92552 0.94969 0.89379 0.83362 0.93845 0.89426 0.77456 0.91878 0.76739 0.88107 0.87787 0.91786 0.87761 0.91674 0.80969 0.83627 0.80209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.47 2.88 -67.94 -0.20 1.28 16 3 H 0.10 1.26 7.57 -51.93 -0.39 0.86 16 4 C 0.05 0.53 5.30 -3.83 -0.02 0.51 16 5 N -0.67 -9.87 6.12 -115.06 -0.70 -10.57 16 6 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 7 C 0.44 10.03 7.82 -10.99 -0.09 9.94 16 8 O -0.58 -15.40 15.78 5.54 0.09 -15.31 16 9 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 10 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 14 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 N -0.72 -6.88 4.36 -53.81 -0.23 -7.11 16 19 C 0.53 5.64 7.51 -10.98 -0.08 5.56 16 20 O -0.54 -7.25 13.62 5.56 0.08 -7.17 16 21 C -0.16 -1.39 5.50 -27.88 -0.15 -1.54 16 22 C 0.18 1.74 3.05 -67.93 -0.21 1.53 16 23 H 0.11 1.19 7.96 -51.93 -0.41 0.78 16 24 C -0.17 -1.59 8.58 37.16 0.32 -1.27 16 25 N -0.37 -3.86 3.52 -54.86 -0.19 -4.05 16 26 C 0.06 0.54 10.59 -17.22 -0.18 0.35 16 27 C -0.28 -2.49 10.80 -40.01 -0.43 -2.92 16 28 C 0.04 0.40 12.03 -17.37 -0.21 0.19 16 29 N -0.30 -3.55 12.58 30.62 0.39 -3.17 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.35 5.21 7.28 -39.29 -0.29 4.92 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.40 3.13 8.15 -40.82 -0.33 2.80 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.54 7.16 -51.93 -0.37 0.17 16 44 H 0.10 1.15 5.94 -51.93 -0.31 0.84 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.17 1.19 7.27 -52.48 -0.38 0.80 16 47 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -33.86 402.31 -7.44 -41.30 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -7.39 Total: 16.16 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.17 Total: 5.54 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.08 Total: -62.26 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.16 Total: -22.49 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.86 -7.44 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716418827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.416 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds