Wall clock time and date at job start Tue Mar 31 2020 19:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 N 1.46906 * 109.47473 * 185.00050 * 4 2 1 6 6 C 1.46896 * 111.00220 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46825 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00235 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00402 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99728 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47203 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47395 * 120.00528 * 14 12 10 17 17 H 1.48509 * 109.47081 * 240.00211 * 14 12 10 18 18 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 19 19 C 1.34784 * 119.99971 * 275.00026 * 18 2 1 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 18 2 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 18 2 22 22 C 1.53002 * 109.47004 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.47066 * 55.00116 * 22 21 19 24 24 C 1.52999 * 109.47325 * 295.00504 * 22 21 19 25 25 N 1.46498 * 109.47242 * 174.99767 * 22 21 19 26 26 C 1.34946 * 126.03338 * 84.72113 * 25 22 21 27 27 C 1.35317 * 107.74448 * 179.83941 * 26 25 22 28 28 C 1.39864 * 107.92118 * 0.41891 * 27 26 25 29 29 N 1.30838 * 108.19949 * 359.74191 * 28 27 26 30 30 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 31 31 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 32 32 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47135 * 304.99852 * 4 2 1 34 34 H 1.09000 * 109.47629 * 64.99939 * 4 2 1 35 35 H 1.00902 * 110.99780 * 56.03718 * 5 4 2 36 36 H 1.09004 * 109.47058 * 299.99591 * 6 5 4 37 37 H 1.08997 * 109.47016 * 60.00038 * 6 5 4 38 38 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 39 39 H 0.97003 * 120.00174 * 179.97438 * 13 12 10 40 40 H 0.96999 * 119.99984 * 94.99874 * 18 2 1 41 41 H 1.09005 * 109.47403 * 300.00056 * 21 19 18 42 42 H 1.09002 * 109.47422 * 60.00295 * 21 19 18 43 43 H 1.09006 * 109.46731 * 299.99817 * 24 22 21 44 44 H 1.08997 * 109.47332 * 59.99039 * 24 22 21 45 45 H 1.08996 * 109.47531 * 180.02562 * 24 22 21 46 46 H 1.08006 * 126.12808 * 359.97438 * 26 25 22 47 47 H 1.08000 * 126.04089 * 180.16396 * 27 26 25 48 48 H 1.08002 * 125.90111 * 179.72034 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2807 8 8 6.1068 -1.1385 -1.3197 9 7 6.2353 -2.2009 -3.2633 10 6 7.6012 -2.2809 -3.1767 11 1 8.1133 -1.8662 -2.3210 12 6 8.3266 -2.8964 -4.1894 13 7 7.7035 -3.4015 -5.2304 14 14 10.1877 -3.0061 -4.0711 15 1 10.6421 -2.3659 -2.8107 16 1 10.6011 -4.4323 -4.0796 17 1 10.7994 -2.3065 -5.2295 18 7 2.0184 -0.6906 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8633 1.1597 2.4104 21 6 2.6489 -0.7287 3.5877 22 6 2.7012 0.2545 4.7588 23 1 1.7216 0.7141 4.8913 24 6 3.7386 1.3406 4.4670 25 7 3.0741 -0.4614 5.9813 26 6 4.3307 -0.7433 6.3841 27 6 4.2475 -1.4093 7.5591 28 6 2.8934 -1.5472 7.8807 29 7 2.1890 -0.9793 6.9356 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7197 -1.2951 34 1 1.7516 -0.1582 -2.1369 35 1 3.7996 -1.2883 -0.3433 36 1 3.6094 -2.5199 -2.4295 37 1 3.7557 -0.9587 -3.2719 38 1 5.7754 -2.5730 -4.0320 39 1 8.2100 -3.8308 -5.9375 40 1 2.2491 -1.6317 1.1526 41 1 1.9760 -1.5506 3.8326 42 1 3.6481 -1.1213 3.3986 43 1 4.7181 0.8810 4.3345 44 1 3.4612 1.8731 3.5574 45 1 3.7762 2.0408 5.3014 46 1 5.2401 -0.4822 5.8632 47 1 5.0796 -1.7739 8.1432 48 1 2.4975 -2.0379 8.7576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716418827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:39 Heat of formation + Delta-G solvation = -22.592564 kcal Electronic energy + Delta-G solvation = -28542.778640 eV Core-core repulsion = 24440.326492 eV Total energy + Delta-G solvation = -4102.452149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17339 -41.02927 -40.13352 -38.08886 -36.34458 -35.98727 -35.07922 -33.26106 -32.46060 -31.15655 -30.63309 -28.98790 -28.81011 -26.70438 -24.81498 -24.42854 -22.47454 -21.96500 -21.50297 -21.09463 -20.72244 -19.90992 -18.73069 -18.03739 -17.48048 -17.25473 -16.86206 -16.73028 -16.38698 -16.01004 -15.85083 -15.64080 -15.33699 -15.23432 -14.85404 -14.67512 -14.35649 -14.22146 -13.99955 -13.87929 -13.62797 -13.52200 -13.33071 -13.09462 -13.04924 -12.94697 -12.79621 -12.61145 -12.45975 -12.39849 -12.25151 -12.11669 -11.94409 -11.61684 -11.51342 -10.94720 -10.39628 -10.36514 -10.09950 -10.01329 -9.52789 -9.33095 -8.47029 -5.95441 0.97060 1.36504 1.42342 1.43012 1.56008 1.58376 1.97805 2.05421 2.24841 2.29263 2.88925 3.20669 3.42111 3.50384 3.58302 3.76140 3.90916 3.98951 4.10873 4.14375 4.20157 4.27221 4.36811 4.41264 4.46728 4.50128 4.59729 4.67285 4.70068 4.75652 4.76714 4.79241 4.82312 4.95058 5.07113 5.16831 5.20036 5.27986 5.41239 5.52089 5.78083 5.86312 6.08371 6.12610 6.37850 6.46364 6.60056 6.79705 7.12885 7.18725 7.56663 8.11759 8.70428 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.002275 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.330416 B =12303.199658 C =14425.504352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.071 0.929 4 C 0.056 3.944 5 N -0.685 5.685 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.331 4.331 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.272 1.272 18 N -0.714 5.714 19 C 0.525 3.475 20 O -0.569 6.569 21 C -0.146 4.146 22 C 0.181 3.819 23 H 0.093 0.907 24 C -0.162 4.162 25 N -0.374 5.374 26 C 0.051 3.949 27 C -0.284 4.284 28 C 0.039 3.961 29 N -0.340 5.340 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.344 0.656 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.409 0.591 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.193 0.807 47 H 0.167 0.833 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 1.100 16.304 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.089 0.911 4 C -0.073 4.073 5 N -0.318 5.318 6 C -0.068 4.068 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.198 1.198 18 N -0.365 5.365 19 C 0.312 3.688 20 O -0.448 6.448 21 C -0.187 4.187 22 C 0.079 3.921 23 H 0.111 0.889 24 C -0.220 4.220 25 N -0.157 5.157 26 C -0.095 4.095 27 C -0.313 4.313 28 C -0.147 4.147 29 N -0.161 5.161 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.163 0.837 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.210 0.790 47 H 0.184 0.816 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.704 3.131 15.985 21.944 hybrid contribution 1.433 -1.733 -0.083 2.250 sum -13.271 1.398 15.902 20.759 Atomic orbital electron populations 1.22067 0.93316 1.03046 1.02728 1.20981 0.94579 0.97062 0.83115 0.91093 1.22363 0.86216 1.00524 0.98244 1.59996 1.10182 1.57512 1.04152 1.21551 0.90199 0.99130 0.95887 1.20930 0.90723 0.82133 0.83827 1.90494 1.72843 1.52686 1.34966 1.41945 1.06857 1.51573 1.20701 1.19675 0.83087 1.36637 1.06704 0.90380 1.26021 1.04810 0.95893 0.94582 1.69672 1.38166 1.38509 1.09744 0.84894 0.77042 0.78297 0.78263 1.19780 1.19552 1.19778 1.45969 1.66767 1.14457 1.09347 1.20429 0.76712 0.86801 0.84902 1.90677 1.51601 1.17046 1.85526 1.22016 1.05259 0.99617 0.91817 1.20811 1.01185 0.90889 0.79246 0.88929 1.22241 0.98235 0.97762 1.03776 1.48976 1.04300 1.44160 1.18263 1.23049 0.90045 0.99002 0.97421 1.21868 0.97913 1.11467 1.00038 1.24420 0.93077 0.98556 0.98642 1.77318 1.18558 1.18477 1.01782 0.93395 0.90019 0.91014 0.92440 0.88379 0.83723 0.91021 0.87696 0.76936 0.91325 0.75527 0.87252 0.86780 0.90682 0.89567 0.91556 0.78970 0.81557 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.48 71.98 0.68 -1.66 16 2 C 0.15 2.84 2.88 44.99 0.13 2.97 16 3 H 0.07 1.80 7.57 -2.38 -0.02 1.79 16 4 C 0.06 1.04 5.30 86.30 0.46 1.50 16 5 N -0.69 -19.15 6.12 -517.95 -3.17 -22.32 16 6 C 0.06 2.00 6.17 85.56 0.53 2.53 16 7 C 0.44 19.82 7.82 87.66 0.69 20.50 16 8 O -0.62 -33.35 15.78 -3.08 -0.05 -33.39 16 9 N -0.57 -28.44 5.29 -306.98 -1.62 -30.06 16 10 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 13 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 14 Si 0.99 42.15 29.55 68.60 2.03 44.17 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 N -0.71 -12.99 4.36 -442.54 -1.93 -14.92 16 19 C 0.52 11.23 7.51 87.65 0.66 11.89 16 20 O -0.57 -15.91 13.62 -3.01 -0.04 -15.95 16 21 C -0.15 -2.52 5.50 29.85 0.16 -2.36 16 22 C 0.18 3.58 3.05 44.99 0.14 3.72 16 23 H 0.09 2.13 7.96 -2.38 -0.02 2.11 16 24 C -0.16 -3.08 8.58 71.98 0.62 -2.46 16 25 N -0.37 -7.74 3.52 -327.48 -1.15 -8.89 16 26 C 0.05 0.88 10.59 83.54 0.89 1.76 16 27 C -0.28 -4.63 10.80 21.99 0.24 -4.40 16 28 C 0.04 0.70 12.03 85.23 1.02 1.72 16 29 N -0.34 -7.95 12.58 -57.03 -0.72 -8.67 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.34 9.89 7.28 -89.69 -0.65 9.24 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 39 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 40 H 0.41 5.76 8.15 -92.71 -0.76 5.00 16 41 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.22 7.16 -2.38 -0.02 1.21 16 44 H 0.09 2.00 5.94 -2.39 -0.01 1.98 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.19 2.34 7.27 -2.91 -0.02 2.31 16 47 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.21 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -74.38 402.31 -0.02 -74.40 By element: Atomic # 1 Polarization: 47.25 SS G_CDS: -1.14 Total: 46.10 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.49 Total: 17.87 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -8.31 Total: -133.21 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.09 Total: -49.35 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -74.38 -0.02 -74.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716418827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.811 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds