Wall clock time and date at job start Tue Mar 31 2020 20:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 N 1.46497 * 109.46729 * 120.00227 * 2 1 3 5 5 N 1.28439 * 125.19215 * 294.53510 * 4 2 1 6 6 C 1.30866 * 110.92571 * 179.88364 * 5 4 2 7 7 C 1.39669 * 107.86509 * 0.38295 * 6 5 4 8 8 C 1.36601 * 125.18661 * 114.84965 * 4 2 1 9 9 C 1.47163 * 126.88721 * 359.97438 * 8 4 2 10 10 O 1.21625 * 119.99862 * 5.25868 * 9 8 4 11 11 N 1.34778 * 120.00025 * 185.25437 * 9 8 4 12 12 C 1.46501 * 119.99842 * 185.11666 * 11 9 8 13 13 H 1.09002 * 109.47089 * 324.99537 * 12 11 9 14 14 C 1.52992 * 109.47246 * 84.99676 * 12 11 9 15 15 C 1.52996 * 109.46794 * 205.00001 * 12 11 9 16 16 N 1.46900 * 109.47518 * 54.99515 * 15 12 11 17 17 C 1.46903 * 111.00277 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.46935 * 180.02562 * 17 16 15 19 19 O 1.21287 * 120.00157 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99339 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99545 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00023 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00123 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00226 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00018 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47652 * 89.99579 * 25 23 21 27 27 H 1.48504 * 109.47390 * 209.99828 * 25 23 21 28 28 H 1.48504 * 109.46960 * 329.99380 * 25 23 21 29 29 H 1.08995 * 109.47577 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47146 * 59.99518 * 1 2 3 31 31 H 1.09000 * 109.47137 * 300.00519 * 1 2 3 32 32 H 1.08996 * 109.46782 * 239.99811 * 2 1 3 33 33 H 1.09000 * 109.46917 * 60.00190 * 3 2 1 34 34 H 1.08998 * 109.46904 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47465 * 300.00286 * 3 2 1 36 36 H 1.08008 * 126.06366 * 180.13907 * 6 5 4 37 37 H 1.08001 * 127.32141 * 179.75852 * 7 6 5 38 38 H 0.97001 * 119.99828 * 5.10436 * 11 9 8 39 39 H 1.09003 * 109.47126 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.47226 * 299.99708 * 14 12 11 41 41 H 1.08995 * 109.47203 * 60.00311 * 14 12 11 42 42 H 1.08999 * 109.47527 * 174.99893 * 15 12 11 43 43 H 1.09007 * 109.47331 * 294.99665 * 15 12 11 44 44 H 1.00899 * 111.00138 * 303.95843 * 16 15 12 45 45 H 1.08998 * 109.46786 * 299.99718 * 17 16 15 46 46 H 1.08994 * 109.47166 * 60.00181 * 17 16 15 47 47 H 0.96996 * 120.00672 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99794 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.8540 -0.2854 2.4038 6 6 2.4008 -1.1163 3.2541 7 6 2.9819 -2.1557 2.5242 8 6 2.7229 -1.8609 1.1969 9 6 3.1263 -2.6499 0.0219 10 8 2.9148 -2.2247 -1.0978 11 7 3.7301 -3.8435 0.1867 12 6 4.2323 -4.5772 -0.9776 13 1 3.5672 -4.4127 -1.8254 14 6 5.6364 -4.0801 -1.3270 15 6 4.2862 -6.0716 -0.6543 16 7 2.9630 -6.5231 -0.2033 17 6 2.9769 -7.9566 0.1174 18 6 1.6054 -8.3824 0.5746 19 8 0.7052 -7.5714 0.6283 20 7 1.3794 -9.6644 0.9237 21 6 0.1319 -10.0517 1.3400 22 1 -0.6695 -9.3294 1.3887 23 6 -0.1013 -11.3734 1.6994 24 7 -1.2970 -11.7445 2.0990 25 14 1.2849 -12.6226 1.6159 26 1 2.0008 -12.6555 2.9165 27 1 0.7236 -13.9665 1.3258 28 1 2.2326 -12.2391 0.5388 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 2.4057 -1.0142 4.3294 37 1 3.5193 -3.0081 2.9129 38 1 3.8323 -4.2166 1.0762 39 1 6.0102 -4.6263 -2.1931 40 1 5.5980 -3.0154 -1.5574 41 1 6.3015 -4.2447 -0.4794 42 1 4.5746 -6.6265 -1.5470 43 1 5.0180 -6.2467 0.1345 44 1 2.6447 -5.9796 0.5849 45 1 3.2563 -8.5247 -0.7698 46 1 3.6995 -8.1442 0.9116 47 1 2.0992 -10.3131 0.8803 48 1 -1.4596 -12.6672 2.3502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716438755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:21 Heat of formation + Delta-G solvation = 8.962922 kcal Electronic energy + Delta-G solvation = -29118.375937 eV Core-core repulsion = 25017.292137 eV Total energy + Delta-G solvation = -4101.083800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.72761 -39.83282 -38.51261 -36.91573 -35.91506 -34.38977 -33.76506 -32.03933 -31.66481 -30.52789 -30.17980 -27.82926 -27.58854 -25.16708 -24.17049 -23.18652 -23.00294 -21.72662 -20.67177 -19.91528 -19.39159 -18.46696 -18.04476 -16.69660 -16.32600 -16.11885 -15.88356 -15.51323 -15.13059 -14.97960 -14.83505 -14.60065 -14.23423 -14.17340 -14.04580 -13.28675 -13.26631 -13.23889 -13.21476 -12.81172 -12.67151 -12.52460 -12.43143 -12.31605 -12.00372 -11.91819 -11.71899 -11.66350 -11.48427 -11.22269 -11.12067 -10.92782 -10.61765 -10.08265 -9.99521 -9.59642 -9.48883 -9.26385 -9.15686 -8.63551 -8.25097 -8.18943 -6.32833 -3.84502 1.09982 2.15602 2.48224 2.96482 3.00555 3.04310 3.05925 3.13208 3.70859 3.94071 4.08313 4.24652 4.35356 4.61374 4.67291 4.71066 4.76106 4.93713 4.95567 4.99720 5.08219 5.19653 5.24374 5.29543 5.30820 5.38059 5.42714 5.43674 5.47695 5.54507 5.56764 5.57401 5.74115 5.79259 5.84743 5.87982 5.90000 5.96916 6.22510 6.35185 6.61148 6.96759 7.16581 7.45008 7.55923 7.86988 7.96897 8.12371 8.57525 8.93050 9.40167 9.80111 10.80265 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.002396 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.318111 B =11685.162563 C =12712.044974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.247 5.247 5 N -0.274 5.274 6 C -0.006 4.006 7 C -0.187 4.187 8 C -0.040 4.040 9 C 0.599 3.401 10 O -0.540 6.540 11 N -0.706 5.706 12 C 0.145 3.855 13 H 0.103 0.897 14 C -0.162 4.162 15 C 0.050 3.950 16 N -0.667 5.667 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.185 0.815 37 H 0.159 0.841 38 H 0.401 0.599 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.349 0.651 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.070 19.758 -2.802 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.214 4.214 4 N -0.036 5.036 5 N -0.106 5.106 6 C -0.181 4.181 7 C -0.217 4.217 8 C -0.168 4.168 9 C 0.385 3.615 10 O -0.417 6.417 11 N -0.358 5.358 12 C 0.041 3.959 13 H 0.121 0.879 14 C -0.221 4.221 15 C -0.080 4.080 16 N -0.301 5.301 17 C -0.085 4.085 18 C 0.234 3.766 19 O -0.445 6.445 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.202 0.798 37 H 0.176 0.824 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.052 0.948 44 H 0.170 0.830 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.265 21.413 -4.345 26.094 hybrid contribution 1.955 -2.267 1.486 3.343 sum 16.221 19.145 -2.859 25.255 Atomic orbital electron populations 1.22140 0.92747 1.03515 1.03470 1.22133 0.96153 0.94492 0.84643 1.22085 1.01732 0.94046 1.03577 1.45997 1.36618 1.15292 1.05647 1.73123 1.21564 1.26078 0.89876 1.23558 1.01299 0.93323 0.99962 1.22245 1.06316 1.02352 0.90754 1.21379 1.06471 0.93307 0.95686 1.16840 0.76960 0.80972 0.86695 1.90712 1.55622 1.70265 1.25146 1.45668 1.59493 1.19588 1.11006 1.21117 0.95739 0.89825 0.89236 0.87941 1.22162 0.95772 1.02165 1.01973 1.22316 0.90585 0.93916 1.01158 1.60007 1.24141 1.03017 1.42901 1.21728 0.96467 0.89956 1.00379 1.19695 0.89669 0.83182 0.84083 1.90580 1.45356 1.51605 1.56942 1.42202 1.11874 1.08348 1.60524 1.19430 0.87417 0.95965 1.40594 0.86297 1.25046 0.96691 0.97080 0.97376 1.69623 1.20349 1.18378 1.43709 0.86663 0.82005 0.81967 0.78692 1.19659 1.20157 1.19479 0.91642 0.90191 0.91272 0.84600 0.91070 0.92131 0.90289 0.79759 0.82360 0.76376 0.91096 0.91917 0.92351 0.89192 0.94777 0.83050 0.89293 0.93661 0.79698 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.45 37.16 0.35 -1.22 16 2 C 0.13 1.34 3.56 -67.93 -0.24 1.10 16 3 C -0.16 -1.32 9.30 37.16 0.35 -0.97 16 4 N -0.25 -3.03 3.09 -50.69 -0.16 -3.19 16 5 N -0.27 -3.36 11.52 30.59 0.35 -3.01 16 6 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 7 C -0.19 -1.92 10.50 -38.98 -0.41 -2.33 16 8 C -0.04 -0.49 6.96 -82.06 -0.57 -1.06 16 9 C 0.60 7.56 7.76 -12.64 -0.10 7.46 16 10 O -0.54 -8.00 14.02 5.26 0.07 -7.92 16 11 N -0.71 -7.24 4.33 -54.97 -0.24 -7.48 16 12 C 0.15 1.44 2.92 -67.94 -0.20 1.25 16 13 H 0.10 1.27 7.51 -51.93 -0.39 0.88 16 14 C -0.16 -1.27 9.48 37.15 0.35 -0.92 16 15 C 0.05 0.50 5.30 -3.83 -0.02 0.48 16 16 N -0.67 -9.64 6.12 -115.06 -0.70 -10.35 16 17 C 0.05 0.74 6.17 -4.97 -0.03 0.71 16 18 C 0.45 9.98 7.82 -10.98 -0.09 9.89 16 19 O -0.56 -15.06 15.78 5.55 0.09 -14.98 16 20 N -0.59 -13.84 5.09 -10.96 -0.06 -13.89 16 21 C -0.31 -8.59 10.16 -14.94 -0.15 -8.75 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 25 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.30 6.52 56.52 0.37 -4.94 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.61 5.32 -51.93 -0.28 1.33 16 33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.19 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.16 1.16 7.62 -52.49 -0.40 0.76 16 38 H 0.40 3.39 7.23 -40.82 -0.30 3.10 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.35 5.27 7.28 -39.29 -0.29 4.98 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -35.51 399.55 -6.98 -42.49 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -7.35 Total: 16.39 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.06 Total: 6.39 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.03 Total: -62.79 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.90 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.51 -6.98 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716438755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.456 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds